A multiple-phenotype imputation procedure as a method for prediction of cheese-making efficiency in Spanish Assaf sheep

Sheep milk is mainly intended to manufacture a wide variety of high-quality cheeses. The ovine cheese industry would benefit from an improvement, through genetic selection, of traits related to the milk coagulation properties (MCPs) and cheese yield-related traits, broadly denoted as “cheese-making traits.” Considering that routine measurements of these traits needed for genetic selection are expensive and time-consuming, this study aimed to evaluate the accuracy of a cheese-making phenotype imputation method based on the information from official milk control records combined with the pH of the milk. For this study, we analyzed records of milk production traits, milk composition traits, and measurements of cheese-making traits available from a total of 1,145 dairy ewes of the Spanish Assaf sheep breed. Cheese-making traits included five related to the MCPs and two cheese yield-related traits. The milk and cheese-making phenotypes were adjusted for significant effects based on a general linear model. The adjusted phenotypes were used to define a multiple-phenotype imputation procedure for the cheese-making traits based on multivariate normality and Markov chain Monte Carlo sampling. Five of the seven cheese-making traits considered in this study achieved a prediction accuracy of 0.60 computed as the correlation between the adjusted phenotypes and the imputed phenotypes. Particularly the logarithm of curd-firming time since rennet addition (logK₂₀) (0.68), which has been previously suggested as a potential candidate trait to improve the cheese ability in this breed, and the logarithm of the ratio between the rennet clotting time and the curd firmness at 60 min (logRCT/A60) (0.65), which has been defined by other studies as an indicator trait of milk coagulation efficiency. This study represents a first step toward the possible use of the phenotype imputation of cheese-making traits to develop a practical methodology for the dairy sheep industry to impute cheese-making traits only based on the analysis of a milk sample without the need of pedigree information. This information could be also used in future planning of specific breeding programs considering the importance of the cheese-making efficiency in dairy sheep and highlights the potential of phenotype imputation to leverage sample size on expensive, hard-to-measure phenotypes.     

Identification of resistance to rust (Uromyces appendiculatus) and powdery mildew (Erysiphe diffusa) in Portuguese common bean germplasm

Portugal has a diverse common bean germplasm, which is still grown in farmers' fields. In this work, we searched for resistance to rust (Uromyces appendiculatus) and powdery mildew (Erysiphe diffusa) in a representative collection of the Portuguese common bean germplasm. Despite many accessions depicting intermediate levels of resistance when compared to the susceptible check, 24 and 13 accessions showed low levels of infection, in spite of a compatible interaction (disease severity (DS) values lower than 5% and infection type (IT) of 4), to rust and powdery mildew, respectively, indicative of partial resistance. Moreover, a resistant reaction was observed in 11 accessions when inoculated with powdery mildew (IT = 0–1) and in additional 11 accessions (one in common) when inoculated with rust (IT = 0–2). The levels of resistance found in this report anticipate great potential of the Portuguese national germplasm, recently reported as genetically closer to the Andean common bean gene pool, for disease resistance breeding of this important crop.     

Responses to water withdrawal of tobacco plants genetically engineered with the AtTPS1 gene: a special reference to photosynthetic parameters

We have previously obtained several lines of tobacco transformed with a trehalose-6-phosphate synthase gene of plant origin (Arabidopsis thaliana), involved in the first step of the biosynthesis of trehalose, a known osmoprotectant. Two showed distinct intensity of expression: high (B5H) and low (B1F). Such lines were analyzed for trehalose-6-phosphate content and the obtained results demonstrated to be in accordance with the expression results. In order to study the responses of photosynthesis to water deficit of transgenic lines in comparison to wild type (WT), three experiments were performed under different conditions: (1) Relative water (2) Leaf gas exchange (3) Modulated Chlorophyll a Fluorescence. Different responses in RWC of plant lines to water withdrawal were detected, with transgenic line B5H indicating less water loss after the water withdrawal period. Similar responses to water deficit regarding the leaf gas exchanges were recorded for the three lines. When subjected to water deficit stress situations, higher F _v/F _m, Φ_PSII and qP were detected for the transgenic lines. Under a SWC of 20% where higher values for such parameters were detected with special relevance for the B5H line, indicating a possible higher ability to withstand severe drought stress and to resist to prolonged periods without water than the B1F and WT lines.     

Postharvest water relations in cut rose cultivars with contrasting sensitivity to high relative air humidity during growth

A constant high relative air humidity (RH) during cultivation can strongly reduce the vase life in some cut rose cultivars. We studied three contrasting cultivars in their tolerance to high RH in order to analyse in detail the water relations during postharvest and better understand this genotypic variation. Plants were grown at moderate (60%) and high (95%) RH, and cut flowers were placed in water immediately after cutting. Flowers of cv. Pink Prophyta grown at high RH did not open throughout vase life, while flower opening of cvs. Frisco and Dream was not affected by preharvest RH. Cultivation at high RH resulted in about 80% shorter vase life in Pink Prophyta, whereas in Dream and Frisco the negative effect was considerably smaller (15 and 9% shorter vase life, respectively). The shorter vase life and reduced flower opening of cut roses grown at high RH was due to a higher rate of transpiration both in the light and dark periods. It was found that the leaves of Pink Prophyta grown at high RH could partly close their stomata upon lowering of the water potential or when flower stalks were fed with abscisic acid, but stomata remained far more open than in leaves grown at moderate RH. The RH during cultivation did not affect stem hydraulic conductivity and its recovery after air emboli induction. Preventing vascular occlusion largely alleviated the high-cultivation-RH effect on vase life and flower opening, showing that the effect of high-cultivation-RH becomes only important if water uptake is limited.     

Physical and Sensory Properties of Regular and Reduced‐Fat Pound Cakes with Added Amaranth Flour

The sum of wheat flour and corn starch was replaced by 10, 20, or 30% whole amaranth flour in both conventional (C) and reduced fat (RF) pound cakes, and the effects on physical and sensory properties of the cakes were investigated. RF presented 33% fat reduction. The increasing amaranth levels darkened crust and crumb of cakes, which decreased color acceptability. Fresh amaranth‐containing cakes had similar texture characteristics to the controls, evaluated both instrumentally and sensorially. Sensory evaluation revealed that replacement by 30% amaranth flour decreased C cakes overall acceptability scores, due to its lower specific volume and darker color. Amaranth flour levels had no significant effect on overall acceptability of RF cakes. Hence, the sum of wheat flour and corn starch could be successfully replaced by up to 20% amaranth flour in C and up to 30% in RF pound cakes without negatively affecting sensory quality in fresh cakes. Moisture losses for all the cakes were similar, ≈1% per day during storage. After six days of storage, both C and RF amaranth‐containing cakes had higher hardness and chewiness values than control cakes. Further experiments involving sensory evaluation during storage are necessary to determine the exact limit of amaranth flour replacement.     

Quantification of loss in oilseed rape yield caused by delayed sowing date in a Mediterranean environment

ABSTRACT

Rapeseed acreage has been increasing fast in the last few decades and cultivated areas have expanded into lower latitudes because of the high value of its seed. This work evaluates the effect of date of sowing and nitrogen (N) fertilization on crop productivity and N use efficiency in a Mediterranean environment. The experiment was arranged in a split-plot design with the dates of sowing as the main-plots and N rates the sub-plots. Rapeseed recovered 128 to 212 kg N hm^-2 before top-dress N application in late winter if sown before the last week of September. Seed yield was very dependent on the date of sowing, varying from 3.4 to 6.2 Mg hm^-2 on the first sowing date in September to 0.3 to 1.0 Mg hm^-2 on the last sowing date in November. The daily loss in seed production was 68.9 kg hm^-2 (or 482.3 kg hm^-2 per week) or 1.53 % (or 10.7 % per week). N rate significantly increased seed yield within each sowing date but did not allow late-sowed plants to regain the productivity levels of those sown earlier. Apparent N recovery and agronomic N efficiency were particularly dependent on the growing conditions associated to different sowing dates.     

Stem Volume Equations for Valuable Timber Species in Mozambique

Development of stem volume for umbrella-shaped crown trees remains a big challenge for efficient use of forest resources in Mozambique. In this study, species-specific stem volume equations were developed for the first time for three of the most important timber species in Mozambique: Afzelia quanzensis Welw. (Chanfuta), Millettia stuhlmannii Taub. (Jambire), and Pterocarpus angolensis D.C. (Umbila). The study was carried out at three locations in Mozambique: Inhaminga, Mavume, and Tome covering 58 trees from which, 24 of Chanfuta, 15 of Jambire, and 19 of Umbila. The volume of the sampled stem sections (logs) was calculated using Smalian’s formula, where stem volume total was obtained through the sum of the respective defined sections. Using a nonlinear procedure, different volume models were tested for each tree species independently. The coefficient of the determination of the tested equations in the tree species ranged from .90 to .95, making the equations potential candidate models for the stem volume equations object of the study. Based on statistical parameters analysis, the best fit nonliner power equation was Equation 2 with the lowest AICc and lowest average absolute bias. The stem volume for the studied species is better explained by models including both diameter and height as explanatory variables.     

A NMR study of water distribution in hardwoods at several equilibrium moisture contents

The water state of one tropical (Robinia coccinea) and two temperate (Acer saccharum and Fagus grandifolia) hardwoods was determined at different equilibrium moisture contents (EMC) during desorption at 25°C. NMR technique was used to separate different components of water in wood. The species studied presented different structures, which were apparent on the spin–spin relaxation T₂ values. Three different water components were separated: slow T₂ (liquid water in vessel elements), medium T₂ (liquid water in fiber and parenchyma elements) and fast T₂ (bound or cell wall water). The NMR results showed that even at equilibrated conditions a region exists where loss of liquid water and bound water takes place simultaneously. This region will vary according to the wood structure. Finally, liquid water was present at EMC lower than the fiber saturation point, which contradicts the concept of this point when considered as a bulk property of wood.     

Thermal comfort indices assessed in integrated production systems in the Brazilian savannah

The objective was to evaluate the animal thermal comfort indices from two integrated crop-livestock-forestry (ICLF) systems. For this, temperature–humidity index (THI), black globe temperature and humidity index (BGHI), and the radiant thermal load (RTL) were assessed. Two ICLF (ICLF-1 and ICLF-2) systems and one control system were established. On the ICLF systems, the arboreal component was the eucalyptus tree (Eucalyptus grandis × Eucalyptus urophylla; H13 clone), planted in simple wide-spaced rows. The ICLF-1 system had a tree spacing of 14 × 2 m with 357 trees per hectare, and the ICLF-2 had a tree spacing of 22 × 2 m with 227 trees per hectare. The control system had five scattered native trees per hectare, pertaining to Gochnatia and Dipteryx species. The forage component in all three systems was piatã-grass (Brachiaria brizantha cv. BRS Piatã). The experimental design was a randomized block in a sub-subplot design scheme with four replications. The presence of shade provided by the trees offered better conditions of animal comfort when compared with the condition of full sun. The ICLF-1 system, with higher tree density, provided better indicators for thermal comfort, THI, BGHI, and RTL when compared with the condition of full sun, while ICLF-2 was no different than ICLF-1 for BGHI.