Geostatistical analysis of the spatial variation of the berry borer and leaf miner in a coffee agroecosystem

The advent of geostatistics and geographical information systems has made it possible to analyze complex spatial patterns of ecological phenomena over large areas in applied insect ecology and pest management. The objective of this study was to use geostatistics to characterize the spatial structure and map the spatial variation of damage caused by the berry borer (Hypothenemus hampei) and leaf miner (Leucoptera coffeella) in a coffee agroecosystem planted with the cultivar Catuai Vermelho IAC-99. Infestations of berry borer and leaf miner were evaluated in fruits and leaves, respectively. The pests were monitored at 67 georeferenced points in an area of 6.6 ha in 2005, 2006 and 2007. Variograms estimated by the method of moments (MoM) and residual maximum likelihood REML were compared. The latter were generally better in terms of the kriging error coefficients. Spherical variograms estimated by REML for berry borer infestation in fruits had ranges of spatial dependence of 34.62–118.4 m and for the leaf miner they were 53.93–133.7 m. For models fitted by weighted ordinary least squares (OLS) to the MoM experimental variogram, the ranges varied between 37.22 and 68.67 m for the berry borer and 100 and 155.4 m for leaf miner infestation. The variogram model parameters were used with the data for ordinary kriging to map the spatial variation of coffee pests for different monitoring periods. If there was no suitable variogram, inverse distance weighting was used to map the variation. The maps enabled visualization of the intensity of infestation of the insect pests for the different periods evaluated.     

Pseudocercospora griseola,the causal agent of common bean angular leaf spot: Strain characterization and sensitivity to fungicides

Angular leaf spot (ALS), an important disease of common bean (Phaseolus vulgaris), is caused by the fungus Pseudocercospora griseola. This pathogen has a wide genetic variability and, therefore, poses a challenge to integrated disease management. The use of resistant cultivars is difficult; hence, the application of fungicides has been a common practice in common bean cultivation. P. griseola strains were morphophysiologically characterized and their sensitivity to common fungicides used to control ALS was studied. The strains were evaluated for sporulation capacity and a representative sample of 34 strains was bioassayed to determine their sensitivity to commercial concentrations of five fungicides, namely pyraclostrobin, mancozeb, pyraclostrobin + metconazole, chlorothalonil and tebuconazole. Another sample of 29 strains was studied for conidial germination and dimensions. Sporulation capacity ranged from 0.88 to 27.67 × 10⁴ conidia/ml and germination percentage ranged from 39% to 72%. The large differences among strains suggest a wide genetic variability among the strains. A wide variability in aggressiveness of P. griseola was observed, which has consequences for breeding programmes aimed at resistance. The behaviour of pathogen strains differed in every fungicide evaluated, even in a population that has not been under selection pressure in the field. These results confirm the need for further studies and may guide future research with this pathogen.     

High prevalence of viruses in table grape from Spain detected by real-time RT-PCR

Table grapes from one of the most important growing area in Spain (Vinalopó, Alicante) protected by the Designation of Origin “Vinalopó bagged table grape”, were surveyed and analysed to determine the prevalence of the five viruses included in the Spanish certification program: Arabis mosaic virus (ArMV), Grapevine fanleaf virus (GFLV), Grapevine fleck virus (GFkV), Grapevine leafroll associated virus-1 (GLRaV-1) and Grapevine leafroll associated virus-3 (GLRaV-3). Ninety five sampling points were selected and the position of grapevine plants georeferenced. Samples were collected in two different vegetative periods and analyses were performed by ELISA and real-time RT-PCR. Purified RNA and immobilized viral targets from plant extracts on nylon membranes were used in parallel assays as templates for PCR assays. In order to analyse these five viral species by real-time RT-PCR, new specific primers and TaqMan probes were designed for detection of ArMV and GFkV. Real time RT-PCR from purified RNA was more sensitive than spot version and ELISA tests. The most prevalent virus was GFLV (95.8%) followed by GLRaV-3 (94.7%), GLRaV-1 (66.3%) and GFkV (65.3%). ArMV was not detected in any sample. The high level of viral infections and the presence of mixed infections suggest that initial infected plant material and uncontrolled traffic of propagation material have played an important role in the spread of viruses.     

Efficacy and dose–response relationship in biocontrol of Fusarium disease in maize by Streptomyces spp.

Two isolates of Streptomyces spp. DAUFPE 11470 and DAUFPE 14632 were evaluated to determine the antagonist–pathogen inoculum concentration relationship under greenhouse conditions. Pathogen and antagonist concentration, significantly (P < 0.05) affected development of Fusarium disease in maize with a significant interaction between pathogen and antagonist concentration. Dose–response relationship also differed significantly (P < 0.05) between the two isolates, but both isolates demonstrated effective control of Fusarium disease, regardless of pathogen concentration. The isolate DAUFPE 11470 provided the most effective control. The lowest value for disease incidence occurred at low pathogen (10³ chlamydospore g⁻¹ soil) and high antagonist concentration (10⁶ cfu ml⁻¹) for both isolates. The disease incidence for control plants ranged from 19% to 76%. However, in relation to control the lowest disease reduction occurred at low pathogen (10³ chlamydospore g⁻¹ soil) and high antagonist concentrations (10⁶ cfu ml⁻¹). These reductions were 10.6% and 13% for DAUFPE 14632 and DAUFPE 11470, respectively. The highest disease reductions, in relation to control plants, occurred at high pathogen (10⁶ chlamydospore g⁻¹ soil) and antagonist (10⁶ cfu ml⁻¹) concentrations for both isolates. These values were 55% and 62.2% for DAUFPE 14632 and DAUFPE 11470, respectively. The chlamydospore germination of Fusarium moniliforme was affected by glucose addition, antagonist isolates and type of inoculum. The lowest chlamydospore germination was observed with bacterial suspensions of the isolates, for all glucose additions. The results suggested that both Streptomyces spp. isolates were effective at different doses as biocontrol agents against F. moniliforme. Also, there was evidence for at least two mechanisms of biocontrol and that apparently, both isolates showed the same mechanisms of biocontrol action related to production of bioactive compounds and competition for carbon. Further studies will be developed to improve the level and effectiveness of control by these isolates.     

Survival of seeds from perennial biomass species during commercial‐scale anaerobic digestion

Tall perennial grass species can be utilised as bioenergy feedstocks, but some are considered invasive species. Using biomass from such species as feedstocks for anaerobic digestion (AD) may introduce the risk of disseminating viable seeds onto agricultural lands during digestate application. To evaluate this risk, we investigated the survival rates of perennial grass seeds obtained from biomass species during AD. After removal from the digester, seeds were germinated and stained with tetrazolium chloride to determine viability. During three experimental runs, batches of 100 seeds from four species were exposed to 0, 2, 6, 12, 24, 48, 72 and 168 h of mesophilic (38°C) AD within a commercial‐scale digester. Seed viability of Phalaris arundinacea, Phragmites australis, Panicum virgatum and Solanum lycopersicum was reduced by 95% (LT₉₅) after 29, 52, 98 and 105 h of AD respectively. Commercial digesters that utilise perennial grasses as a feedstock typically have retention times ranging from 240 to 1480 h, which greatly exceeds the LT₉₅ values found in this study. Anaerobic digestion resulted in the rapid death of seeds in all species tested, suggesting unwanted dissemination of perennial grass species via digestate application to agricultural land is unlikely.     

Urban sediment particle size and pollutants in Southern Brazil

Background, aim and scope

Studies of particulate-associated pollutants, or PAPs, in urban areas have become necessary due to their potentially deleterious effects on the environment. However, it is not just the sediments themselves which are problematic but also their particle size composition, which has a great influence on their capacity to adsorb and transport pollutants. This paper presents the particle size distributions and concentrations of five metals (Cr, Cu, Ni, Pb and Zn) of urban sediments collected from paved streets and gully pots from 20 cities in southern Brazil. The cities have different characteristics and hence sources of PAPs associated with differing geologies, soil types and type of urbanisation. Studies of this nature enable elucidation of the relationship between diffuse sources such as streets and gully pots and the likelihood of PAPs to subsequently pollute the urban aquatic environment.

Materials and methods

Sediment samples were taken at random from paved streets and gully pots in 20 cities in Rio Grande do Sul state, southern Brazil by means of a portable vacuum cleaner to avoid loss of finer particles. The particle sizes of the samples were measured using a Cilas® 1180 laser particle analyzer, and the concentrations of five metals (Cr, Cu, Ni, Pb and Zn) were determined by wet acid digestion (HCl–HF–HClO₄–HNO₃) followed by inductively coupled plasma atomic emission spectroscopy on the <63-µm fraction.

Results

It was found that in comparison to sediments collected from the streets, gully pot sediments were more heterogeneous in terms of particle size and also that sediment samples from the gully pots were predominantly coarser than those originating on the streets. From the gully pot results, analysis of the modal particle diameter enabled the cities to be divided into three categories. The concentrations of metals in the street sediments were similar across all 20 cities, with all concentrations above background values.

Discussion

The fact that concentrations of metals in the street sediments were above statutory guideline values and that the coarser material was deposited in the gully pots suggests that the finer, more polluted sediment is not retained in the gully pots but is transported to the nearest local receiving watercourse. This finding has implications for management strategies for reducing pollution in urban environments.

Conclusions

High concentrations of Cr, Cu, Ni, Pb and Zn in the <63-µm fraction of street sediments, in combination with coarse material retained in the gully pots, indicate that metals could be transferred quite rapidly from the diffuse source of pollutants, on impermeable street surfaces, to receiving watercourses.

Recommendations and perspectives

Studies of urban sediment particle size and geochemistry enable predictions to be made of sediment behaviour in urban environments. This will inform management strategies such as the possibility of including sustainable urban drainage systems in future management plans, in which it is useful to know how efficient the drainage system is from the point of view of sediment deposition in the urban aquatic environment and the potential for pollution of receiving waters.