RAPD variability in rice (Oryza sativa L.) plants derived from desiccation-tolerant calli

Genetic modification from selfed progenies of 18 rice (Oryza sativa L.) plants regenerated from callus tissues which survived desiccation, were investigated at the DNA level using the random amplified polymorphic DNA (RAPD) method. Twelve 10-mer random primers were used to amplify DNA of progenies from the regenerated plants, and a total of 228 PCR products and 1780 DNA fragments were obtained by primers, generating between four to thirteen major bands. The size of the amplified fragments ranged from 0.2 to 2.55 kb. The results showed that 10 out of 12 primers produced polymorphic bands, two primers (RA31 and RA185) showed no polymorphism among plants tested. A dendrogram of the genetic distance was constructed based on their polymorphism, demonstrating that somaclonal variation exists in rice plants regenerated from callus which survived the desiccation treatment. Part of this variation can be useful in rice breeding. This revised version was published online in August 2006 with corrections to the Cover Date.     

An assessment of genetic diversity and population structures of fifteen Vietnamese indigenous pig breeds for supporting the decision making on conservation strategies

Tropical Animal Health and Production - The study aimed to characterize genetic diversity, genetic clusters, and phylogenetic relationships of 15 Vietnamese indigenous pig breeds across the country...     

The phenotypic characteristics and relational database for Vietnamese native pig populations

Although there are a number of Vietnamese native pig (VnP) populations, some are on the verge of extinction, and therefore adequate management and conservation are necessary. In this study, we conducted a field survey of VnP populations and analyzed interrelationships among their characteristics. We also established a relational database for management of field data on these populations. For data collection, we conducted interviews with farmers and visual inspection of 32 VnP populations in 22 provinces of Vietnam, as well as taking photographs of individual animals. Data on the characteristics of VnP populations were subjected to multiple correspondence analysis (MCA). For establishment of the database, normalization and table partitioning were performed to eliminate redundancy and ensure consistency of the collected data items. Passport data, characteristics data, and image data were collected from a total of 1,918 VnPs and entered as a normalized table. Upon MCA, most of the populations were not separated from each other, but the Mong Cai, O Lam, and Chu Prong populations were separated from the other populations. Thus, we have constructed a relational database from comprehensive information on the characteristics of VnP populations.     

Generation of a cold-adapted PRRSV with a nucleotide substitution in the ORF5 and numerous mutations in the hypervariable region of NSP2

A cold-adapted porcine reproductive and respiratory syndrome virus (CA-VR2332) was generated from the modified live virus strain VR2332. CA-VR2332 showed impaired growth when cultured at 37°C with numerous mutations (^S731^F, ^E819^D, ^G975^E, and ^D1014^N) in the hypervariable region of the NSP2, in which the mutation ^S731^F might play a vital role in viral replication at 30°C. Conserved amino acid sequences of the GP5 protein suggests that CA-VR2332 is a promising candidate for producing an effective vaccine against PRRSV infection. Further studies on replication and immunogenicity in vivo are required to evaluate the properties of CA-VR2332.     

Increasing cyst yields in Artemia culture ponds in Vietnam: the multi-cycle system

In this study, one-cycle and multi-cycle culture systems for Artemia in seasonal salt ponds are compared. In one-cycle systems, Artemia is inoculated only once per season, while in multicycle systems ponds are drained and re-stocked several times per season. In Vietnam, three-cycle systems gave significantly higher cyst yields than did the one-cycle system. However, after two cycles, systems were not significantly different. Food limitation probably caused the steady decline in cyst yields, as observed in the one-cycle ponds. In these ponds, females have smaller broods (from the second cycle onwards) and during the last cycle the number of adult females is lower than in multi-cycle ponds.     

Controlled reproduction of an important indigenous fish species, Spinibarbus denticulatus (Oshima, 1926), in Southeast Asia

Aquaculture of Spinibarbus denticulatus (Oshima, 1926), a fish species indigenous to North Vietnam and Eastern China, is constrained by lack of fingerlings for stocking ponds and cages. As these fish do not naturally breed in captivity, carp pituitary extract (CPE), luteinizing hormone-releasing hormone analogue (LHRHa) with domperidone (DOM) and human chorionic gonadotropin (HCG) were administered at various doses to induce ovulation. A first set of experiments evaluated the response to LHRHa (30, 40 and 50 μg kg⁻¹) with or without DOM (10 mg kg⁻¹), CPE (20, 30 and 40 mg kg⁻¹) and HCG (3000, 4000 and 5000 IU kg⁻¹). A second set of experiments evaluated the dose response to LHRHa (30, 35, 40 and 50 μg kg⁻¹) primed with 6 mg kg⁻¹ of CPE, and HCG (3000, 3500, 4000, 5000 IU kg⁻¹) primed with 6 mg kg⁻¹ of CPE. The treatment groups were compared with each other and the control (injected with 0.9% saline solution). Only 25% and 50% ovulation resulted when treated with LHRHa at 40 and 50 μg kg⁻¹, whereas 100% ovulation was achieved with an addition of DOM to LHRHa. Both 30 and 40 mg kg⁻¹ CPE induced 100% ovulation. However, HCG (4000 and 5000 IU kg⁻¹) induced ovulation in only 33% of females. When primed with CPE, the minimum dose of LHRHa required was 35 μg kg⁻¹ to achieve 70% ovulation. Priming HCG with CPE also resulted in 100% ovulation, and the minimum effective dose of HCG to induce ovulation was 3500 IU kg⁻¹ with 60% ovulation. Fertilization and hatch rates observed in this study with different hormonal stimulation were high (80–93%). The results indicate that while the use of combined hormone strategy has no apparent advantage over a single hormone strategy, LHRHa+DOM (40 μg kg⁻¹+10.0 mg kg⁻¹) and CPE (30 mg kg⁻¹) are most effective in consistently inducing ovulation and thus can be used for commercial hatchery production of S. denticulatus larvae.     

Between ‘state’ and ‘society’: Commune authorities and the environment in Vietnam's craft villages

Maintaining a liveable environment in Vietnam's polluted craft villages is a daily challenge for state authorities and residents. Neighbouring urban populations demand that the state effectively curtails and manages pollution, while local residents prioritise their livelihoods and routinely flout regulations. The commune official, tasked with the seemingly impossible task of environmental regulation, occupies a fraught position, torn between the imperatives and constraints of craft producers and state regulatory demands. This study of water pollution in northern Vietnam's craft villages finds that commune officials' conflicted role in environmental governance is a central factor in the failure of the current environmental governance regime, and reflects the internally conflicted nature of the Vietnamese state.     

A 50-year record of quinolone and sulphonamide antimicrobial agents in Seine River sediments

Purpose  

Even though sediments may represent a reservoir for antimicrobial agents, little is known about the persistence of these molecules over time or their accumulation. In this study, six antimicrobial agents, oxolinic acid, flumequine, nalidixic acid, norfloxacin, sulphamethoxazole and trimethoprim, were investigated in a sediment core from the Seine River. This work aimed to (1) measure antimicrobial agent contamination levels in the sediment and identify their origins, (2) obtain information on the persistence of these compounds in sediment over long periods (>4 years) and (3) show the existence of a historical record in sediment of river contamination by antimicrobial agents.     

In silico structural characteristics and α-amylase inhibitory properties of Ric c 1 and Ric c 3, allergenic 2S albumins from Ricinus communis seeds

The major Ricinus communis allergens are the 2S albumins, Ric c 1 and Ric c 3. These proteins contain a trypsin/α-amylase inhibitor family domain, suggesting that they have a role in insect resistance. In this study, we verified that Ric c 1 and Ric c 3 inhibited the α-amylase activity of Callosobruchus maculatus, Zabrotes subfasciatus, and Tenebrio molitor (TMA) larvae as well as mammalian α-amylase. The toxicity of 2S albumin was determined through its incorporation in C. maculatus larvae as part of an artificial diet. Bioassays revealed that 2S albumin reduced larval growth by 20%. We also analyzed the tridimensional structures of Ric c 1 and Ric c 3 by (a) constructing a comparative model of Ric c 1 based on Ric c 3 NMR structure and (b) constructing the theoretical structure of the Ric c 1-TMA and Ric c 3-TMA complexes. Our biological and theoretical results revealed that Ric c 1 and Ric c 3 are a new class of α-amylase inhibitors. They could potentially be used to help design inhibitors that would be useful in diverse fields, ranging from diabetes treatment to crop protection.     

Metabolite profiling of Angelica gigas from different geographical origins using 1H NMR and UPLC-MS analyses

Angelica gigas obtained from different geographical regions was characterized using (1)H nuclear magnetic resonance (NMR) spectroscopy and ultraperformance liquid chromatography-mass spectrometry (UPLC-MS) followed by multivariate data analyses. Principal component analysis (PCA) and orthogonal partial least-squares-discriminant analysis (OPLS-DA) score plots from (1)H NMR and UPLC-MS data sets showed a clear distinction among A. gigas from three different regions in Korea. The major metabolites that contributed to the discrimination factor were primary metabolites including acetate, choline, citrate, 1,3-dimethylurate, fumarate, glucose, histamine, lactose, malate, N-acetylglutamate, succinate, and valine and secondary metabolites including decursin, decursinol, nodakenin, marmesin, 7-hydroxy-6-(2R-hydroxy-3-methylbut-3-ethyl)coumarin in A. gigas roots. The results demonstrate that (1)H NMR and UPLC-MS-based metabolic profiling coupled with chemometric analysis can be used to discriminate the geographical origins of various herbal medicines and to identify primary and secondary metabolites responsible for discrimination.