Issues and special features of animal health research

ABSTRACT: In the rapidly changing context of research on animal health, INRA launched a collective discussion on the challenges facing the field, its distinguishing features, and synergies with biomedical research. As has been declared forcibly by the heads of WHO, FAO and OIE, the challenges facing animal health, beyond diseases transmissible to humans, are critically important and involve food security, agriculture economics, and the ensemble of economic activities associated with agriculture. There are in addition issues related to public health (zoonoses, xenobiotics, antimicrobial resistance), the environment, and animal welfare.Animal health research is distinguished by particular methodologies and scientific questions that stem from the specific biological features of domestic species and from animal husbandry practices. It generally does not explore the same scientific questions as research on human biology, even when the same pathogens are being studied, and the discipline is rooted in a very specific agricultural and economic context.Generic and methodological synergies nevertheless exist with biomedical research, particularly with regard to tools and biological models. Certain domestic species furthermore present more functional similarities with humans than laboratory rodents.The singularity of animal health research in relation to biomedical research should be taken into account in the organization, evaluation, and funding of the field through a policy that clearly recognizes the specific issues at stake. At the same time, the One Health approach should facilitate closer collaboration between biomedical and animal health research at the level of research teams and programmes.     

Reference Value Advisor: a new freeware set of macroinstructions to calculate reference intervals with Microsoft Excel

Abstract: International recommendations for determination of reference intervals have been recently updated, especially for small reference sample groups, and use of the robust method and Box–Cox transformation is now recommended. Unfortunately, these methods are not included in most software programs used for data analysis by clinical laboratories. We have created a set of macroinstructions, named Reference Value Advisor, for use in Microsoft Excel to calculate reference limits applying different methods. For any series of data, Reference Value Advisor calculates reference limits (with 90% confidence intervals [CI]) using a nonparametric method when n≥40 and by parametric and robust methods from native and Box–Cox transformed values; tests normality of distributions using the Anderson–Darling test and outliers using Tukey and Dixon–Reed tests; displays the distribution of values in dot plots and histograms and constructs Q–Q plots for visual inspection of normality; and provides minimal guidelines in the form of comments based on international recommendations. The critical steps in determination of reference intervals are correct selection of as many reference individuals as possible and analysis of specimens in controlled preanalytical and analytical conditions. Computing tools cannot compensate for flaws in selection and size of the reference sample group and handling and analysis of samples. However, if those steps are performed properly, Reference Value Advisor, available as freeware at http://www.biostat.envt.fr/spip/spip.php?article63 , permits rapid assessment and comparison of results calculated using different methods, including currently unavailable methods. This allows for selection of the most appropriate method, especially as the program provides the CI of limits. It should be useful in veterinary clinical pathology when only small reference sample groups are available.     

Canine reference intervals for the Sysmex XT-2000iV hematology analyzer

Background: The laser‐based Sysmex XT‐2000iV hematology analyzer is increasingly used in veterinary clinical pathology laboratories, and instrument‐specific reference intervals for dogs are not available. Objective: The purpose of this study was to establish canine hematologic reference intervals according to International Federation of Clinical Chemistry and Clinical and Laboratory Standards Institute guidelines using the Sysmex XT‐2000iV hematology analyzer. Methods: Blood samples from 132 healthy purebred dogs from France, selected to represent the most prevalent canine breeds in France, were analyzed. Blood smears were scored for platelet (PLT) aggregates. Reference intervals were established using the nonparametric method. PLT and RBC counts obtained by impedance and optical methods were compared. Effects of sex and age on reference intervals were determined. Results: The correlation between impedance (I) and optical (O) measurements of RBC and PLT counts was excellent (Pearson r=.99 and .98, respectively); however, there were significant differences between the 2 methods (Student's paired t‐test, P<.0001). Differences between sexes were not significant except for HCT, PLT‐I, and PLT‐O. WBC, lymphocyte, and neutrophil counts decreased significantly with age (ANOVA, P<.05). Median eosinophil counts were higher in Brittany Spaniels (1.87 × 10⁹/L), Rottweilers (1.41 × 10⁹/L), and German Shepherd dogs (1.38 × 10⁹/L) than in the overall population (0.9 × 10⁹/L). PLT aggregates were responsible for lower PLT counts by the impedance, but not the optical, method. Conclusion: Reference intervals for hematologic analytes and indices were determined under controlled preanalytical and analytical conditions for a well‐characterized population of dogs according to international recommendations.     

Genetic parameters estimates for ewes’ behavioural reactivity towards their litter after lambing

In livestock, improving maternal reactivity towards the litter is an important issue in breeding strategies to promote production and animal welfare. As of yet, no studies have investigated the within-breed genetic variation of maternal reactivity in sheep. The objective of this study was to estimate the genetic parameters of maternal reactivity traits. A total of 1,095 primiparous and 1,441 multiparous Romane ewes were phenotyped 24 hr postlambing using a behavioural test (arena test, AT) over a 10-year experimental period. The test consisted of three successive phases evaluating the ewe's attraction to her litter, reactivity to separation from her litter, and reactivity to a conflict between attraction to her litter and avoidance of a motionless human. The ewes were reared exclusively on rangelands (South of France) and lambed outdoors in the spring. High-pitched bleating and low-pitched bleating in the AT were mostly highly heritable (0.39‒0.46). Heritabilities were moderate for proximity to the litter in the presence of a human (0.27) and low for locomotion and vigilance in the AT (0.09‒0.15). The measurements of a given behaviour in the three phases of the AT were highly genetically correlated. Few genetic correlations were found between the different behavioural traits in the AT, the highest correlations being between high-pitched bleating and low-pitched bleating (−0.43 to −0.77). In conclusion, our findings demonstrate moderate-to-high heritability for maternal reactivity traits. These traits could be included in genetic selection schemes to enhance maternal attachment provided there is no unfavourable link with other production traits.     

Sustainable green tea production through agroecological management and land conversion practices for restoring soil health,crop productivity and economic efficiency: Evidence from Northern Vietnam

Tea is a very important cash crop in Vietnam as it provides crucial income and employment for farmers in poor rural areas. Unfortunately, the dominance of long-term, conventional tea cultivation has caused severe soil health degradation and environmental pollution. At the same time, as tea production may provide a better net income compared with other annual crops such as rice and vegetables, farmers have been converting parts of their allocated land to cultivate tea plants. Little is known about the benefit of agroecological management as an alternative to conventional tea management practices, and thus, there is a need to understand how it can improve tea yields, quality and the livelihoods of the farmers. Conducted in Northern Vietnam from 2019 to 2022, this study examined the impacts of agroecological tea management practices on soil health indicators, tea yield and quality, and net income of tea farmers. We showed that agroecological management practices significantly enhanced soil organic matter by 0.8% and soil pH by 0.5 units on average. Conversely, conventional management based on chemical fertilizer applications, significantly increased soil total nitrogen by 0.15%–0.2%. No significant differences were observed between soil texture and other soil chemical characteristics. Soil biological parameters were also significantly higher in agroecological tea soil and root samples than in conventional tea plots. Average AMF frequency and intensity of the agroecological tea roots were 98% and 37%, respectively, compared with 73% and 15% of the conventional tea roots. Likewise, soil macrofauna and mesofauna abundance in the agroecological tea plantations was 76 individuals/m² and 101 individuals/100 g fresh soil on average, respectively, while that of conventional tea farms were 34 and 63 individuals/100 g fresh soil, respectively. Interestingly, a comparison between the converted and nonconverted lands did not show any significant effect of the conversion on soil physicochemical and biological characteristics, apart from tea root AMF colonization. Conventional tea management consistently resulted in higher tea yield and yield components, even though the differences were not always statistically significant. Despite lower tea yields, agroecological tea adopters earned around USD 8400 ha/year more than the farmers still practicing conventional management. This study shows that it is economically and environmentally more sustainable to produce organic tea than conventional tea, and our results should encourage more farmers to adopt such agroecological practices in Northern Vietnam.     

Effects of single and dual inoculation with selected microsymbionts (rhizobia and arbuscular mycorrhizal fungi) on field growth and nitrogen fixation of <Emphasis Type="Italic">Calliandra calothyrsus</Emphasis> Meissn

Our study aimed to assess the effect of dual inoculation with the selected Rhizobium strain KWN35 and the arbuscular mycorrhizal isolate BEG 176 (Glomus etunicatum) on the growth of Calliandra calothyrsus cultivated under irrigation in the field in Senegal (Dakar) over a period of 24 months. Although plants inoculated with both microsymbionts grew better (height and root collar diameter) than plants from three other inoculation treatments (control, single inoculation with KWN35 or BEG 176), these results were not statistically different except at 1 and 5 months after field transplantation. KWN35 was present in a relatively high percentage of nodules harvested from plants inoculated with this rhizobial strain either alone or with mycorrhiza (approximately 60% and 40% 1 and 2 years after field transplantation respectively). The percentage of mycorrhizal root infections was around 60% in the inoculated plants after 12 months with significantly higher N, P and K foliar contents of trees compared with the non-inoculated controls. However, as for nodulation, by 24 months after transplantation, there were no significant differences between treatments. We conclude that field inoculation of C. calothyrsus with Rhizobium strain KWN35 and arbuscular mycorrhizal isolate BEG 176 did not have a long-lasting effect on the growth of trees, even when a majority of nodules were occupied by the inoculated rhizobia and the roots infected by the mycorrhiza. Several reasons can be postulated for these results, such as a possible effect of soil fertility on the efficiency of the nodules.     

The Leptosphaeria maculans – Leptosphaeria biglobosa species complex in the American continent

Stem canker of oilseed rape (canola, Brassica napus ) is associated with a species complex of two closely related fungal species, Leptosphaeria maculans and L. biglobosa . Of these, L. maculans is the most damaging and develops gene-for-gene relationships with the host . Here, a wide scale analysis of the L. maculans - L. biglobosa species complex was performed throughout the American continent (23 locations from Chile to Canada) plus several locations in Western Australia for comparison purposes, based on a collection of 1132 isolates from infected tissues of a susceptible cultivar. Fungal species were discriminated on the basis of morphological, phytopathological and molecular criteria and showed that L. biglobosa was closely associated with L. maculans in most of the locations. Multiple gene phylogeny using sequences of ITS, actin and β-tubulin confirmed the prevalence of the L. biglobosa 'canadensis' sub-clade in Canada, whereas up to three different sub-clades of L. biglobosa were found in Georgia (USA). Race structure of L. maculans was investigated using a combination of pathogenicity tests and PCR amplification of avirulence alleles AvrLm1 , AvrLm4 and AvrLm6 . Three contrasting situations were observed: (i) race structure in Ontario, Chile and Georgia was related to that of European and Western Australian populations, with a low race diversity; (ii) only one race was found in Mexico, and not found outside of this country; (iii) a large diversity of races was observed in central Canada (Manitoba, Alberta and Saskatchewan) with very specific features including maintenance of avirulence alleles absent from Europe, absence of the AvrLm7 allele common in Europe (or eastern Canada) and wide location-to-location variability.