Cost–benefit analysis of two culture methods that influence pearl production from the black‐lip pearl oyster,Pinctada margaritifera

The black‐lip pearl oyster, Pinctada margaritifera, used for round pearl production in Polynesia, is generally cultured using “ear‐hanging” where they are attached to a rope to form “chaplets.” In other countries, pearl oysters are cultured using panel (pocket) nets that are more expensive than chaplets but afford more protection to cultured oysters. Prior research has shown panel nets produce pearls of higher quality and value, potentially generating higher profits. This study used cost–benefit analysis to compare pearl production using chaplet‐based and panel net‐based culture methods. Whole farm data, including gross revenues and annual production costs, fixed and variable, were analyzed. Average production cost per pearl using panel net‐based culture was USD 22.47 and for chaplet‐based culture was USD 21.55. However, use of panel nets saved around 3,430 hr (USD 6,860) of labor a year, offsetting the greater capital investment. A chaplet‐based pearl farm generated USD 65,738 in annual profits compared to USD 88,774 for a panel net‐based farm. Positive cash flow was achieved 1 year earlier (Year 7) for the panel net‐based farm. This is the first economic analysis of different pearl culture methods for P. margaritifera and evidence of profitability will support further development of the black‐lip pearl industry in the Indo‐Pacific region.     

Computational design of proteins targeting the conserved stem region of influenza hemagglutinin

We describe a general computational method for designing proteins that bind a surface patch of interest on a target macromolecule. Favorable interactions between disembodied amino acid residues and the target surface are identified and used to anchor de novo designed interfaces. The method was used to design proteins that bind a conserved surface patch on the stem of the influenza hemagglutinin (HA) from the 1918 H1N1 pandemic virus. After affinity maturation, two of the designed proteins, HB36 and HB80, bind H1 and H5 HAs with low nanomolar affinity. Further, HB80 inhibits the HA fusogenic conformational changes induced at low pH. The crystal structure of HB36 in complex with 1918/H1 HA revealed that the actual binding interface is nearly identical to that in the computational design model. Such designed binding proteins may be useful for both diagnostics and therapeutics.     

Analysis of genotype-by-environment interaction in a multisite progeny test with Scots pine for supporting selection decisions

European Journal of Forest Research - In multisite forest genetic experiments, the presence of genotype?×?environment interaction (GEI) is common. GEI may negatively affect the...     

Size heterogeneity, growth potential and aggression in juvenile yellowtail kingfish (Seriola lalandi Valenciennes)

The ontogenetic development of size heterogeneity and aggression was monitored in commercial culture tanks of yellowtail kingfish (Seriola lalandi Valenciennes). Size heterogeneity increased substantially with the introduction of Artemia as a food source at 12 days post‐hatch (DPH), and was correlated with the appearance of aiming behaviour, a precursor to more direct aggressive interactions. Chasing behaviour started at approximately 19 DPH (10–12 mm total length), with the main aggressors being large‐grade individuals comprising 8% of the population. At any one time, only 10–30% of this grade carried out all of the chases, meaning that a very small proportion of the entire population (1%) was responsible for most of the aggressive interactions. The main recipients of aggression were the small grade, comprising 42% of the population, while the medium grade (50% of the population) were generally not aggressive and received only a low to moderate level of aggression. A grading trial showed that large‐grade juveniles only displayed aggressive behaviour in the presence of size heterogeneity, and that medium‐ or small‐grade juveniles did not establish an agonistic hierarchy in the absence of large individuals. A high level of aggression in the ungraded control treatment was associated with mortality of most of the small individuals. Even in the absence of aggression, the small‐grade juveniles failed to gain weight or show an increase in the RNA/DNA ratio after 12 days. The large‐ and medium‐grade larvae showed an isometric increase in RNA/DNA ratio during development, indicating that faster‐growing individuals are likely the result of better food capture or processing traits rather than better protein synthesis rates. Decreasing size heterogeneity and aggression via grading mostly benefits the medium‐grade individuals, as the majority of small individuals within a batch appear to be on a degenerative developmental trajectory irrespective of an aggressive environment.     

Forest responses to climate change in the northwestern United States: Ecophysiological foundations for adaptive management

Climate change resulting from increased concentrations of atmospheric carbon dioxide ([CO₂]) is expected to result in warmer temperatures and changed precipitation regimes during this century. In the northwestern U.S., these changes will likely decrease snowpack, cause earlier snowmelt, increase summer evapotranspiration, and increase the frequency and severity of droughts. Elevated [CO₂] and warmer temperatures may have positive effects on growth and productivity where there is adequate moisture or growth is currently limited by cold. However, the effects of climate change are generally expected to reduce growth and survival, predispose forests to disturbance by wildfire, insects, and disease; and ultimately change forest structure and composition at the landscape scale. Substantial warming will likely decrease winter chilling resulting in delayed bud burst, and adversely affect flowering and seed germination for some species. The extent of these effects will depend on the magnitude of climate change, the abilities of individual trees to acclimate, and for tree populations to adapt in situ, or to migrate to suitable habitats. These coping mechanisms may be insufficient to maintain optimal fitness of tree populations to rapidly changing climate. Physiological responses to climatic stresses are relatively well-understood at the organ or whole-plant scale but not at the stand or landscape scale. In particular, the interactive effects of multiple stressors is not well known. Genetic and silvicultural approaches to increase adaptive capacities and to decrease climate-related vulnerabilities of forests can be based on ecophysiological knowledge. Effective approaches to climate adaptation will likely include assisted migration of species and populations, and density management. Use of these approaches to increase forest resistance and resilience at the landscape scale requires a better understanding of species adaptations, within-species genetic variation, and the mitigating effects of silvicultural treatments.     

Proton transfer reaction mass spectrometry and time intensity perceptual measurement of flavor release from lipid emulsions using trained human subjects

The effect of the fat component of liquid emulsions on dynamic "in-nose" flavor release was examined using a panel of trained human subjects (n = 6), proton transfer reaction mass spectrometry (PTR-MS), and time intensity (TI) sensory evaluation. A rigorous breathing and consumption protocol was developed, which synchronized subjects' breathing cycles and also the timing of sample introduction. Temporal changes in volatile release were measured in exhaled nostril breath by real-time PTR-MS. Corresponding changes in the perceived odor intensity could also be simultaneously measured using a push button TI device. The method facilitated accurate examination of both "preswallow" and "postswallow" phases of volatile release and perception. Volatile flavor compounds spanning a range of octanol/water partition coefficient (K(o/w)) values (1-1380) were spiked into water (0% fat) or lipid emulsions with various fat contents (2, 5, 10, and 20% fat). Replicate samples for each fat level were consumed according to the consumption protocol by six subjects. Statistical comparisons were made at the individual level and across the group for the effects of changes in the food matrix, such as fat content, on both pre- and postswallow volatile release. Significant group differences in volatile release parameters including area under the concentration curve (AUC) and maximum concentration (I(max)) were measured according to the lipid content of emulsions and volatile K(o/w). In a second experiment, using single compounds (2-heptanone, ethyl butanoate, and ethyl hexanoate), significant decreases in both in-nose volatile release and corresponding perceived odor intensities were measured with increasing fat addition. Overall, the effect of fat on in vivo release conformed to theory; fat had little effect on compounds with low K(o/w) values, but increased for volatiles with higher lipophilicity. In addition, significant pre- and postswallow differences were observed in AUC and I(max), as a result of changing fat levels. In the absence of fat, more than half of the total amount of volatile was released in the preswallow phase. As the content of fat was increased in the emulsion systems, the ratio of volatile released postswallow increased compared to preswallow. These data may provide new insights into why low-fat and high-fat foods are perceived differently.     

Effects of Short-term Heating on Total Polyphenols,Anthocyanins, Antioxidant Activity and Lectins of Different Parts of Dwarf Elder (Sambucus ebulus L.)

Dwarf elder (Sambucus ebulus L.) berries are rich in health-promoting phytochemicals such as polyphenols and anthocyanins, and display a significant antioxidant activity. They are also rich in two lectins (ebulin f and SELfd) that share amino acid sequence homology with the elderberry allergen Sam n1 present in Sambucus nigra pollen and fruits. Ebulin f displays toxicity by oral ingestion. This study was aimed at eliminating the toxicity of these lectins whilst having little or no effect on the antioxidant properties of dwarf elder berries. We thus investigated the potential effects of incubation in a boiling water bath of extracts from several parts of the plant on total polyphenol content, antioxidant activity, total anthocyanins, cyanidin-3-glycoside content, and the sensitivity of purified dwarf elder fruit lectins to a simulated gastric fluid. The study shows that five minutes of said heat treatment fully sensitized both lectins to pepsin digestion, whilst minimally reducing phenol and antioxidant as well as free radical scavenging activities to below 13 %. It proved possible to eliminate the potential risks derived from the presence of lectins in dwarf elder juices without any significant reduction in the content of the antioxidant compounds. Dwarf elder berries may thus be a valuable nutritional source.     

Substance Flow Analysis of Mercury Affecting Water Quality in the European Union

Knowledge concerning the main flows of priority substances (PSs) and the production systems and consumption structures in the society causing these flows is a prerequisite for any attempt to predict and understand their environmental fate as well as to efficiently minimize future environmental burdens. In this paper, a simple SFA diagram on mercury, including the main European Union (EU-27) source categories, flows and environmental endpoints which in turn affect the mercury concentrations in the EU-27 waters are illustrated. From trend analysis and future projections, it becomes obvious that emissions of mercury as a trace contaminant in fuels and minerals (primary anthropogenic emission sources) are becoming increasingly important to the environmental concentrations compared to emissions from mercury used intentionally (secondary anthropogenic sources). Additional future control strategies should therefore be targeted industrial sources and safe treatment of mercury-containing wastes, wastewater effluents, as well as residues collected from various combustion processes. It was found that knowledge on flows and emission sources on a large geographical scale is limited due to a lack of information on emission factors from various industrial processes and waste systems, especially for the mercury being discharges to water and land.     

An invertebrate harmfulness scale for research on plant pest diversity and impacts

Traditional methods of quantifying the harmful effects of invertebrates on plants require time-consuming identification of large numbers of individuals at species level. Collected specimens usually are killed; this may be unacceptable for some strictly protected species and may bias the results of subsequent surveys at the same site.

We developed a “harmfulness scale” for quick, non-invasive assessment of invertebrate impacts on plants, and used the scale to test differences in invertebrate attack on species of Balsaminaceae, Polygonaceae and Asteraceae growing in lowland and mountains in Poland. In 2010–2011, we recorded 9190 invertebrates and identified them in situ to family or superfamily level. Among them were 7593 pests, accounting for 82.6% of all recorded organisms. Pests were three times more numerous in the mountains than in the lowland. Balsaminaceae were most heavily attacked by pests (92.9% of all organisms detected on them). Aphidoideae were the most numerous pests.

This method can help reduce the costs and labour required for this type of research, facilitating progress in theoretical biology and in the development of practical phytosanitary measures.