Recruitment abundance index of Pacific bluefin tuna using fisheries data on juveniles

ABSTRACT:   The recruitment abundance index of Pacific bluefin tuna Thunnus orientalis was estimated from 1980 to 2003 fishing year by using the troll fishery data in Nagasaki Prefecture, western Japan. It has been shown that the troll fishery in Nagasaki Prefecture operates with good time–area coverage of the species habitat, and that the fishing power slightly changed during the period analyzed, based on fisheries statistics, published information, and interviews with the fishers. Average catch per unit effort (CPUEs) were standardized by a generalized linear model (GLM) considering the effects of fishing year, season and landing area. Standardized CPUE of age-0 bluefin tuna showed larger fluctuations year by year than the nominal CPUE combined for all ages. High CPUEs in fishing years of 1981, 1994, 1996 and 1999 were observed. Data from these years agreed with the higher recruitments estimated by virtual population analysis (VPA) or higher catch of age-0 fish reported for the Pacific side. The age-specific standardized CPUE of age-0 bluefin tuna in this study was judged to be a useful indicator of recruitment.     

Effect of thin twine on gill net size-selectivity analyzed with the direct estimation method

ABSTRACT: To analyze the effect of thin twine on gill net size selectivity, a series of fishing experiments using gill nets of two twine thicknesses (no. 0.8 of 0.16 mm diameter and no. 3 of 0.28 mm diameter) and three nominal mesh sizes (41 mm, 46 mm and 51 mm) was conducted in outdoor water tanks containing a rainbow trout ( Oncorhynchus mykiss ) population of known size frequency. For nets of the same nominal mesh size, mesh openings of the no. 0.8 twine nets were approximately 2 mm larger than those of the no. 3 twine nets. The effects of both mesh opening and twine thickness are combined in the conventional analysis with the selectivity curve against fish length. Selectivity against the ratio of fish girth to mesh perimeter was calculated to avoid the direct effect of changes in mesh openings due to twine diameter at the same nominal mesh size. Results demonstrated that the thinner twine gill net was more likely to capture rainbow trout of smaller girth than the mesh perimeter. Fish with girths smaller than the mesh perimeter were often retained by the net with its body tangled by the thinner twine, possibly due to the increased flexibility of the thinner twine.     

Genome sequencing and functional genomics approaches in tomato

Tomato genome sequencing has been taking place through an international, 10-year initiative entitled the International Solanaceae Genome Project (SOL). The strategy proposed by the SOL consortium is to sequence the approximately 220Mb of euchromatin that contains the majority of genes, rather than the entire tomato genome. Tomato and other Solanaceae plants have unique developmental aspects, such as the formation of fleshy fruit, not afforded by Arabidopsis or rice. Divergent phenotypes and habitats of the Solanaceae also make the family an ideal model to explore the bases of diversification and adaptation. Current progress in genome sequencing, genetic and genomic resources, and functional genomics approaches for tomato is summarized. Given the foreseen wealth of information in the upcoming genome sequence, the role of the laboratory-grown miniature tomato cultivar Micro-Tom as a valuable functional genomics tool for plant pathology and emerging areas of biology, such as omics biology, is emphasized.     

Tissue retention and adverse reaction after intravenous injection of hematoporphyrin derivatives in dogs

We evaluated changes in hematology and chemical profile, and the tissue retention of hematoporphyrin derivative (HpD) following the intravenous injection in dogs. HpD at concentrations of 1, 5, 10, and 15 mg/kg was intravenously injected to 16 dogs (n=4 each) and complete blood count (CBC) and blood chemistry were performed on days 1, 3, 5, and 7 after the injection. To examine tissue retention, HpD (5 mg/kg) was administered to 15 dogs and 3 dogs were euthanized on days 1, 2, 7, 14, and 28 after the injection, respectively, to collect the skin, muscle, small intestine, spleen, kidney and liver as tissue samples. There were no significant changes in CBC and blood chemical profile except for an increase in LDH concentrations in dogs given 10 and 15 mg/kg of HpD at day 3. The levels of HpD retention in the tissues were ranked in the following order: liver > kidney > spleen > intestine > muscle > skin.     

Sensitivity of FCV to recombinant feline interferon (rFeIFN)

Feline calicivirus cause feline respiratory diseases, and inactivated and attenuated vaccines are available for its prevention. Moreover, the presence of vaccine breakdown strains (VBS) is problematic. In Japan, feline recombinant interferon (rFeIFN) has been used for its treatment. However the method of compare with each strains has not established. To examine the relationship between the breakdown vaccine strain and rFeIFN sensitivity, the sensitivity of 47 field isolates to rFeIFN was determined. The Log PDD₅₀ values were normally distributed within the range 1.1–3.7, with a mean value of 2.3 ± 0.64. Since 68.3% of the PDD values fell in the range of the mean ± standard deviation, the values in the range 1.7–2.9, the lower values, and the higher values were defined as representing moderate, low, and high sensitivity, respectively. Among the 15 vaccine breakdown strains, strain Fukuoka9 showed a low sensitivity, but strains ML89, T58, and N74 were highly sensitive, showing no association with vaccine breakdown. The amino acid sequence changes specific to the low rFeIFN-sensitive Fukuoka-9 strain were found, suggesting that these sites are involved in rFeIFN sensitivity.     

Relationship between arginine vasopressin and high signal intensity in the pituitary posterior lobe on T1-weighted MR images in dogs

The posterior lobe of the pituitary gland (PL) normally shows characteristic high signal intensity (SI) on T1-weighted MR images (T1WI) in humans. The high SI is thought to represent storage of arginine vasopressin (AVP) in the PL. Normal dogs also show a high SI on T1WIs, but the origin is unclear. In the present study, we investigated whether the high SI in the PL on T1WIs in normal dogs is caused by AVP. We examined the SI in the PL on T1WIs, plasma AVP concentrations and plasma osmolality in normal dogs after excessive AVP secretion was induced by hypertonic saline overload. In addition, functional changes in the supraoptic nucleus and paraventricular nucleus of the hypothalamus under AVP secretion-stimulated conditions were examined immunohistologically. Under hypertonic saline overload, plasma osmolality and plasma AVP concentrations gradually increased, while the SI of the PL gradually decreased. This suggests that AVP secretion was stimulated by elevated osmolality. Moreover, there was a significant negative correlation between plasma AVP concentrations and the SI ratio of the PL. An immunohistochemical study of the hypothalamus nucleus revealed that AVP-immunopositive cells significantly increased in the hypertonic saline loaded dogs. We concluded that the high SI in the PL in T1WIs in normal dogs was caused by AVP stored at the site, and examination of the SI in the PL using MRI is useful for diagnosis of abnormal pituitary glands.     

Correlation between skeletal muscle fiber type and free amino acid levels in Japanese Black steers

Free amino acids are important components of tastants and flavor precursors in meat. To clarify the correlation between muscle fiber type and free amino acids, we determined the concentrations of various free amino acids and dipeptides in samples of different muscle tissues (n = 21), collected from 26‐month‐old Japanese Black steers (n = 3) at 2 days postmortem. The proportions of the myosin heavy chain (MyHC), slow (MyHC1) and fast (MyHC2) isoforms were determined by sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS–PAGE). The contents of free amino acids and dipeptides were measured by high performance liquid chromatography (HPLC). The MyHC isoform composition varied among the tissue samples. The MyHC1 proportion ranged from 6.9% ± 3.9% to 83.3% ± 16.7%. We confirmed that there was a strong positive correlation between MyHC1 composition and total free amino acid concentrations, including those for two dipeptides. Among the 31 measured free amino acids and dipeptides, 11 showed significant positive correlations and five showed significant negative correlations with MyHC1 composition. These results suggest that a high MyHC1 content induces high free amino acid contents in bovine muscles possibly because of greater oxidative metabolism. This high level of free amino acids could contribute to the intense flavor of meat that is rich in slow‐twitch fibers.     

Knockout mouse production assisted by Blm knockdown

Production of knockout mice using targeted embryonic stem cells (ESCs) is a powerful approach for investigating the function of specific genes in vivo. Although the protocol for gene targeting via homologous recombination (HR) in ESCs is already well established, the targeting efficiency varies at different target loci and is sometimes too low. It is known that knockdown of the Bloom syndrome gene, BLM, enhances HR-mediated gene targeting efficiencies in various cell lines. However, it has not yet been investigated whether this approach in ESCs is applicable for successful knockout mouse production. Therefore, we attempted to answer this question. Consistent with previous reports, Blm knockdown enhanced gene targeting efficiencies for three gene loci that we examined by 2.3–4.1-fold. Furthermore, the targeted ESC clones generated good chimeras and were successful in germline transmission. These data suggest that Blm knockdown provides a general benefit for efficient ESC-based and HR-mediated knockout mouse production.     

Population size estimation of the pond smelt Hypomesus nipponensis in Lake Kasumigaura and Lake Kitaura,Japan

We estimated the population size of the pond smelt Hypomesus nipponensis at the beginning of the fishing season in Lake Kasumigaura and Lake Kitaura, Japan using two DeLury methods and cohort analysis. A growth curve was estimated on the basis of monthly standard length. The relationship between standard length and weight was utilized for calculating the mean weight on the survey day in a particular month. Total monthly catches in Lake Kasumigaura and Lake Kitaura were calculated using partial monthly pond smelt catch obtained from processing plants located near the lakes between July and December. The total monthly catch was calculated from the total monthly catch weight and the monthly mean weight. The number of boats operating each month, compiled by the Kasumigaura-Kitaura Fisheries Office of Ibaraki Prefecture, was also employed. The estimated initial population sizes were compared with the population level index (PLI) estimated from survey data before the start of the fishing season. No significant differences were detected among the initial population sizes estimated by DeLury method, cohort analysis and PLI. The estimates ranged from 7.4 million to 410 million in Lake Kasumigaura, and from 7.7 million to 44 million in Lake Kitaura.     

Ultrasonic treatment to improve the quality of recycled pulp fiber

The effect of ultrasound on the quality of recycled fibers was investigated. Ultrasound was applied to recycled pulp fiber suspension before ink removal by conventional flotation. The ultrasonic treatment induced an increase in the sedimentation volume of the fiber, which implies that the flexibility and bulkiness of the fiber increase. The water retention value of the ultrasonically treated fiber recovered from the loss caused by the recycling. These facts are due to a beating effect of the treatment. The paper sheets prepared from the ultrasonically treated fiber suspension showed higher sheet density, tensile strength, and brightness than that from an untreated fiber suspension. The process, which consists of ultrasonic treatment for 1 min following flotation deinking, requires about 1.4 times as much energy as the conventional flotation deinking process, but it induced 20% improvement in brightness. The results indicate that the ultrasonic treatment is effective in improving recycled fiber quality.This report was presented in part at the 48th Annual Meeting of the Japan Wood Research Society, Shizuoka, April 1998; and at the 5th Annual Meeting of the Japan Cellulose Society, Kyoto, July 1998