Long-term mild hypoxia does not reduce thermal tolerance or performance of the freshwater prawn Macrobrachium tenellum

The present study was designed to assess the performance of the freshwater prawn Macrobrachium tenellum in optimal and sub-optimal dissolved oxygen conditions, considering increasing environmental pressures. Thermal tolerance and thermal metabolic scope (TMS) with related integrated biomarker response (IBR) were measured in prawns exposed to normoxia (80% air saturation), mild (40% air saturation) and severe hypoxia (25% air saturation) at three exposure time points (10, 20 and 30 days). Effects of hypoxia on thermal tolerance were not detectable over time; they were perhaps masked by hyperventilation, or by an increase or diversion of haemolymph processes. After 30 days, TMS was 11% higher in mild hypoxia compared with normoxia, while it was 64% lower in severe hypoxia, indicating the loss of aerobic metabolism capacity during the latter. Mild-hypoxia prawns maintained a high IBR over time, supported by antioxidant enzyme activities (mainly superoxide dismutase), which helped avoid the serious oxidative damage (proteins and lipids) seen in severe hypoxia animals, as well as lower acetylcholinesterase activity that indicated failure of communication between the nervous and locomotor systems. Our results documented a high tolerance by M. tenellum to mild-hypoxia events, which should be further tested under seasonal and extreme habitat/tank temperatures.     

Investigating the potential for genetic improvement of nitrogen and phosphorus efficiency in a Swiss large white pig population using chemical analysis

Pig production contributes to environmental pollution through excretion of phosphorus and nitrogenous compounds. European pig production requires annual imports of currently 36 million tons of soya bean, because domestic plant protein sources often do not meet the required protein quality. Most of the mineral phosphate sources are also imported. It is therefore desirable to improve nutrient deposition efficiency through selective breeding, that is to realise similar growth rates and carcass compositions as currently achieved but with a lower intake of dietary crude protein or phosphate. For a preliminary evaluation of the potential of selecting for increased nutrient deposition efficiency, we estimated genetic parameters for nitrogen and phosphorus efficiencies in a Swiss Large White pig population including 294 individuals. Nutrient efficiency phenotypes were obtained from wet-chemistry analyses of pigs of various live weights. Heritability of nitrogen efficiency was estimated at 41%. Heritability of phosphorus efficiency was very low (0.3%), but positive genetic correlations with nitrogen efficiency suggest that breeding for nitrogen efficiency would positively affect phosphorus efficiency. Further studies are needed to improve the quality of estimates and to obtain accurate high-throughput measures of nutrient efficiency to be implemented on farms.     

Development of two real-time PCR assays for the detection of Mycoplasma hyopneumoniae in clinical samples

In order to improve the diagnosis of enzootic pneumonia (EP) in pigs two real-time polymerase chain reaction (rtPCR) assays for the detection of Mycoplasma hyopneumoniae in bronchial swabs from lung necropsies were established and validated in parallel. As a gold standard, the current "mosaic diagnosis" was taken, including epidemiological tracing, clinical signs, macro- and histopathological lesions of the lungs and immunofluorescence. One rtPCR is targeting a repeated DNA element of the M. hyopneumoniae genome (REP assay), the other a putative ABC transporter gene (ABC assay). Both assays were shown to be specific for M. hyopneumoniae and did not cross react with other bacteria and mollicutes from pig. With material from pigs of defined EP-negative farms the two assays showed to be 100% specific. When testing lungs from pig farms with EP, the REP assay detected 50% and the ABC assay 90% of the farms as positive. Both tests together detected all positive farms. Within a positive herd the two assays tested similarly with on average over 90% of the lung samples analysed from a single farm showing positive scores. A series of samples with suspicion of EP and samples from pigs with diseases other than respiratory taken from current routine diagnostic was assayed. None of the assays showed false positive results. The sensitivities in this sample group were 50% for the REP and 70% for the ABC assays and for both assays together 85%. The two assays run in parallel are therefore a valuable tool for the improvement of the current diagnosis of EP.     

Assessment of the bacterial community diversity associated with the queen conch Strombus gigas (Linnaeus, 1758) from the Caribbean coast of Colombia using denaturing gradient gel electrophoresis and culturing

The biotic diversity of Strombus gigas has not been thoroughly studied despite the status of the queen conch as an important ecological resource. The bacteria associated with the conch influence their host in several ways, including through the metabolism of nutrients, protection against invasive bacteria and the regulation of the physical conditions. In this study, conventional microbiological methods and molecular tools such as denaturing gradient gel electrophoresis (DGGE) were used to assess the composition of the bacterial communities associated with the queen conch (S. gigas) in wild and captive habitats in Colombia. A genetic analysis of the bacterial communities revealed a high level of diversity based on the large number of bands detected using DGGE. In addition, differences in bacterial community structure were found between the conchs in captivity and the wild populations. The dominant phylogenetic affiliations of the bacteria, as determined using 16S rRNA gene sequencing, were grouped into four classes, namely, Betaproteobacteria (16%), Gammaproteobacteria (70%), Firmicutes (7%) and Actinobacteria (2%). These groups are related to host defence processes and the decomposition of organic matter. The 16S rDNA sequence analysis of the cultured bacteria and the resulting DGGE profiles are useful tools for characterizing the diversity of the bacteria associated with the analyzed conchs.     

Shape differences of the Carina sterni in birds of various locomotion types

The anatomy of the sternum in birds varies according to their habitats and type of locomotion. In particular, the carina sterni manifest different shape variations. In this study, the shape of the carina sterni was investigated by means of geometric morphometrics. Birds of different types of locomotion were used in the study: flying, swimming, and terrestrial. Ducks and chickens show a wider variety of shapes. Pigeons are the species with the least differences. The margo cranialis carinae in a turkey is the flattest compared to other species. In chickens, the apex carinae is more caudally than the base of the carina sterni. The margo cranialis of the carina sterni in ducks is concave. The differences in centroid size and shape differences between species collectively are statistically significant (p < 0.0001). The most distinct shape contrast is between the duck and turkey (p: 0.0003). Form differences between the ducks and geese as well as between the chicken and turkey are statistically insignificant. There is less variation in the shape of the carina sterni among avian species representing the same type of locomotion. Although there are many comparative morphological and morphometric studies of birds, shape analysis studies revealing the interspecific differences and similarities of the sternum are very limited. Morphology of the carina sterni can be useful in taxonomic investigations.     

Forest conversion adversely affects native Macrobrachium shrimp assemblages in tropical Malaysian streams

1. Commodity-driven forest conversion represents one of the most severe threats to freshwater biodiversity in Southeast Asia, notably causing population declines and the extinction of freshwater fish species.
2. Although a variety of freshwater taxa are likely to be adversely affected by forest conversion, little is known about the impact on ecologically and economically important invertebrates such as decapod crustaceans.
3. This study evaluated the impact of forest conversion and land-use change on freshwater Macrobrachium shrimp species, using species richness, abundance, and environmental data collected from 20 streams across southern Peninsular Malaysia. Streams were located in three types of landscape: forest; oil palm plantation; and mixed land use, comprising young secondary forest, small-scale plantations, patches of open and sparsely vegetated areas, and agricultural fields and clearings.
4. Generalized linear models showed that even incomplete change from forest habitats to mixed land use and oil palm plantation resulted in significantly lower Macrobrachium native species richness and higher non-native species abundance. Native species richness was positively correlated with canopy cover, leaf litter, substrate size, and dissolved oxygen, and was negatively correlated with water temperature and conductivity. Native species richness was also negatively correlated with non-native species abundance, with non-native species abundance increasing along the human disturbance gradient.
5. These results highlight the need for riparian habitat protection to conserve native Macrobrachium and limit the spread of non-native species. A management priority should be to maintain or restore optimum instream habitat conditions for shrimps, which would also benefit fish and other benthic macroinvertebrates. Suitable riparian management requires substantial support and funding from multiple stakeholders, but it can be aligned with other catchment-based strategies to optimize the use of limited resources available for freshwater biodiversity conservation.