Genomic evaluation for novel stayability traits in Nellore cattle

Cow stayability plays a major role on the overall profitability of the beef cattle industry, as it is directly related to reproductive efficiency and cow's longevity. Stayability (STAY63) is usually defined as the ability of the cow to calve at least three times until 76 months of age. This is a late-measured and lowly heritable trait, which consequently constrains genetic progress per time unit. Thus, the use of genomic information associated with novel stayability traits measured earlier in life will likely result in higher prediction accuracy and faster genetic progress for cow longevity. In this study, we aimed to compare pedigree-based and single-step GBLUP (ssGBLUP) methods as well as to estimate genetic correlations between the proposed stayability traits: STAY42, STAY53 and STAY64, which are measured at 52, 64 and 76 months of cow's age, considering at least 2, 3 and 4 calving, respectively. ssGBLUP yielded the highest prediction accuracy for all traits. The heritability estimates for STAY42, STAY53, STAY63 and STAY64 were 0.090, 0.151, 0.152 and 0.143, respectively. The genetic correlations between traits ranged from 0.899 (STAY42 and STAY53) to 0.985 (STAY53 and STAY63). The high genetic correlation between STAY42 and STAY53 suggests that besides being related to cow longevity, STAY53 is also associated with the early-stage reproductive efficiency. Thus, STAY53 is recommended as a suitable selection criterion for reproductive efficiency due to its higher heritability, favourable genetic correlation with other traits, and measured earlier in life, compared with the conventional stayability trait, that is STAY63.     

Use of two cloprostenol administrations 11.5 days apart efficiently synchronizes oestrus in photostimulated multiparous dairy goats in the non-breeding season

This study assessed the efficiency of synchronous oestrous induction by light programme followed by two doses of cloprostenol in acyclic Saanen goats of different parity orders. Primiparous (n = 22) and multiparous (n = 33) goats were subjected to 16 hr of light and 8 hr of darkness for 60 days (D0-D60), starting 10 days after the winter solstice. All goats received 120 µg cloprostenol doses on D130 (morning) and D141.5 (afternoon) (11.5 days apart). Oestrus behaviour, ovarian follicular dynamics and serum progesterone (P4) analyses were recorded from D0 to D174 at different intervals. Animals in oestrus after D141.5 were randomly assigned into two groups: assisted natural mating (NM) or artificial insemination (AI; 10–24 hr after oestrus onset with frozen-thawed semen). From D57 to D120, 89.0% of goats presented large follicles (5–8 mm) and P4 concentrations were subluteal from D0 to D120. More multiparous compared to primiparous goats (54.5%, 18/33 vs. 18.2%, 4/22) exhibited oestrus after both injections. More primiparous compared to multiparous goats (54.5%, 12/22 vs. 12.1%, 4/33) did not exhibit oestrus after any injection. A total of 35 goats (64%) were in oestrus after the second prostaglandin injection and were subjected to NM or AI. The conception rate was similar among primiparous (70.0%, 7/10) and multiparous (68.0%, 17/25) goats but the pregnancy rate differed, being 31.8% (7/22) and 51.5% (17/33), respectively. No interaction was found between parity order and P4 concentrations in does that became pregnant or not. Thus, the association between light programme (60 days, starting at the beginning of winter) and two cloprostenol administrations 11.5 days apart (starting 70 days after the end of the light treatment) resulted in sufficient synchronous oestrous response in multiparous acyclic Saanen goats to reach satisfactory fertility levels after both NM and AI.     

An approach to rescue the fertility of stallions with a high level of hemospermia

A high amount of blood and not the mere presence of blood in equine semen impacts fertility. The aim of this study was to develop an approach to rescue the fertility of stallions with high hemospermia levels. Semen from 15 stallions was divided into four experimental groups: (a) Control—pure raw semen, (b) WB50—50% (v/v) whole blood added into semen, (c) E1—WB50 extended in a 1:1 (v/v) ratio with milk-based extender and (d) E2—WB50 extended in a 2:1 ratio with milk-based extender. Sperm kinetics, plasma membrane integrity (PMI), lipid peroxidation (PER) and intracellular superoxide (O₂) production were immediately evaluated. Four cycles of 20 mares were randomly assigned to the experimental groups. Mares were bred with an insemination dose of 1 billion total sperm and pregnancy was diagnosed 14 days after ovulation. Sperm kinetics could not be evaluated in the WB50 samples. Total motility was lower (p < .05) in E1 than in CT and E2 samples. Progressive motility decreased (p < .05) with an increase in the percentage of blood in the samples. The PMI and PER did not differ between groups (p > .05); however, O₂ production was higher (p < .05) in WB50 than in E2 samples, while the values were intermediate (p > .05) for CT and E1 samples. The control (90%) and E2 (90%) groups had superior (p < .05) fertility than the others (WB50—0% and E1—25%). It was concluded that sperm motility and fertility of semen with a large amount of blood can be rescued by dilution with a 2:1 extender:semen ratio using a milk-based extender.     

Single superphosphate fertilizer distribution among seeder-fertilizer rows

The objective was to verify the uniformity of single superphosphate distribution among seeder-fertilizer rows and its consequences on crops. The experiment was installed in the municipality of Tibagi—PR, involving the following crop rotation in the same area: black oat (Avena strigosa) in 2012, corn (Zea mays) in the 2012–13 season, wheat (Triticum aestivum) in 2013, soybeans (Glycine max) in the 2013–14 season, black oat in 2014 and corn closing the cycle in the 2014–15 season. The experimental design was used in randomized blocks, considering the number of rows of the seeder-fertilizer (ranging from 11 for corn to 27 for wheat) as treatments; with three replicates. During the experimental period, 250 kg ha^?1 of single superphosphate were distributed per crop at sowing, with a mean deviation of up to 14% and variation in the fertilizer mass among the seeder-fertilizer rows in up to 52%. The variables evaluated were initial population and income components. It was concluded that it is not possible to correlate the variation of fertilizer distribution among rows of the seeder-fertilizer with the variables that presented significant differences in the crops through three agricultural seasons. This fact may be related to the alternation of the highest and lowest doses of simple superphosphate. Due to the succession of seeder-fertilizers used over the years to crops seeding, there was a compensation for the random variation of fertilizer among rows and crop spacings along the crop seasons.

     

Protein, carbohydrate, lipid and chlorophyll a content in Isochrysis aff. galbana (clone T-Iso) cultured with a low cost alternative to the f/2 medium

Growth, proximate composition and chlorophyll a content was estimated in static cultures of Isochrysis aff. galbana (clone T-Iso) to compare the quality and quantity of the biomass produced with an agricultural fertilizer medium versus f/2 medium. Culture of microalgae was done with controlled temperature, air flux of 4.5 l min⁻¹, salinity of 33‰ and an irradiance of 110±3 μmol m⁻² s⁻¹. Daily samples from the cultures were taken to estimate cellular density, proximate composition and chlorophyll a content during 7 days. Mean cellular density from samples with f/2 medium and with agricultural fertilizer were similar (no significance at P≤0.05), and mean growth rates of 0.62 and 0.61 doubling per day, respectively. Maximum similar values of protein content of 7.3 and 7.6 pg per cell were estimated on the 5th day in f/2 and agricultural fertilizer medium, respectively. Carbohydrate and lipid content decreased during the first 5 days corresponding to the exponential growth in both experiments. Higher content of carbohydrate (no significance at P≤0.05) was found in both media during the first 2 days, after 4 days the carbohydrates reduced three times theirs concentrations. Generally lipid contents in the cultures with agricultural fertilizer were significantly higher (P≤0.05) than f/2 medium. The chlorophyll a content increased exponentially during the culture, and its concentration was similar in both experiments. In conclusion, the cellular density and the biochemical constituents were similar when using either media. This fertilizer can be used in the production of I. galbana (T-Iso) employed in aquaculture.     

A set of highly polymorphic microsatellites useful for kinship and population analysis in turbot (Scophthalmus maximus L.)

The turbot (Scophthalmus maximus) is a flatfish species of great commercial value for aquaculture. In this study we describe the isolation and characterization of 30 novel highly polymorphic microsatellite markers in this species obtained from a genomic library enriched for seven short tandem repeated motifs. Much higher polymorphism (mean number of alleles: 13.37; mean expected heterozygosity: 0.869) and potential for parentage assignment than previously reported for microsatellites in turbot were found after the analysis of 24 wild individuals. Most loci conformed to Hardy–Weinberg expectations, excluding Sma‐USC20 and Sma‐USC28, which showed a high heterozygote deficit probably due to the presence of null alleles. No significant genotypic disequilibrium was observed between any pair of loci, suggesting no close linkage between them. These loci are potentially useful for kinship and population analysis in turbot.     

In vivo dry matter and protein digestibility of three plant-derived and four animal-derived feedstuffs and diets for juvenile Australian redclaw, Cherax quadricarinatus

Dry matter and protein digestibility of three plant-derived and four animal-derived feedstuffs and diets in which they were included were evaluated for juvenile Australian redclaw. The ingredients evaluated were: soy paste, textured wheat, sorghum meal, two sardine meals (67% and 58% crude protein), squid meal, and red crab meal. A reference diet was formulated and produced in the CIBNOR nutrition laboratory. Seven experimental diets were then made including 15% of each ingredient in the reference diet. The experiment consists of a single-factor, completely randomized design with five replicates per treatment. Digestibility was measured indirectly, using chromic oxide as a marker. Plant-derived ingredients and the corresponding diets had, in general, a higher digestibility than animal ingredients. Soy paste and sorghum meals, and the diets in which they were included, showed an excellent dry matter (over 87%) and protein (approximately 90%) digestibility. Some of the animal ingredients such as sardine meal 67% CP and squid meal had a good dry matter digestibility (over 80%), but were significantly lower than plant-derived ingredients. The lowest dry matter and protein digestibility was recorded for sardine meal 58% CP and red crab meal. It is concluded that juvenile redclaw are omnivorous and able to efficiently consume diets containing plant- and animal-derived ingredients, but they can digest plant-derived ingredients more efficiently.     

Tracing trophic pathways through the marine ecosystem of Rapa Nui (Easter Island)

1. The structure of food webs provides important insight into biodiversity, organic matter (OM) pathways, and ecosystem functioning.
2. Stable isotope analysis (δ¹³C and δ¹⁵N) was used to characterize the trophic structure and the main OM pathways supporting food webs in the Rapa Nui coastal marine ecosystem.
3. The trophic position of consumers and isotopic niche metrics were estimated for different assemblages (i.e. mesozooplankton, emergent zooplankton, reef invertebrates, reef fishes, pelagic fishes, and seabirds). Furthermore, the relative importance of different OM sources (i.e. macroalgae, zooxanthellate corals, and particulate OM [POM]) was assessed for heterotrophic consumers using Bayesian mixing model (MixSIAR).
4. Results show a clear pattern of ¹³C and ¹⁵N enrichment from small-sized pelagic and benthic invertebrates, to reef and pelagic fishes, and seabirds. Most invertebrates were classified as primary consumers, reef fishes as secondary consumers and pelagic predators and seabirds as tertiary and quaternary consumers.
5. Isotopic niche metrics indicate a low trophic diversity for pelagic assemblages (mesozooplankton and pelagic fishes), in contrast to reef fauna (invertebrates and fishes), whose higher trophic diversity suggest the exploitation of a wider range of trophic resources. Overlapping of standard ellipses areas between reef invertebrates and reef fishes indicates that both assemblages could be sharing trophic resources.
6. Mixing models results indicate that POM is the main trophic pathway for mesozooplankton, macroalgae (Rhodophyta) for emergent zooplankton, and a mix of coral-derived OM and Rhodophyta for coral reef assemblages such as macrobenthos and reef invertebrates. In contrast, POM contribution was notably more important for some pelagic fishes and seabirds from upper trophic levels.
7. This study provides key elements for conservation efforts on coral reefs, management planning and full-implementation of the recently created Rapa Nui Multiple Use Marine Protected Area.

     

Comparing the stability of successional transient models in kelp forests and barrens (south-east Pacific): Implications for conservation monitoring

1. Ecological stability based on statistical variability was contrasted with the asymptotical local stability of transient states during successional changes in community structure in kelp forests and barren grounds.
2. Simplified semi-quantitative ecological models with different levels of complexity were constructed to represent transient successional states in kelp and barrens, and Routh–Hurwitz's criteria and Levins' criterion of local stability were also estimated.
3. The results suggest that ecological stability based on statistical variation does not match local (mathematical) stability, since although successional changes in kelp exhibited less variability (measured as percentage coefficient of variation), barren beds were more locally stable. The local stability criteria used in the current work could be a suitable technique for evaluating the likelihood of transient ecological states to resist or change, since it considers states at equilibrium to maintain their properties only against small disturbances.
4. These outcomes are relevant because the natural alternation between kelp and barrens could be disrupted by the intensive harvest of kelp species carried out over the last 10 years on the central-north Chilean coast and in other temperate ecosystems.
5. Additionally, the negative effects of harvesting kelp species could have a synergetic relationship with other drivers such as climate change and coastal pollution. Thus, strict policy managements to limit the kelp harvest are deeply encouraged. A monitoring programme for assessing the current conditions of benthic–pelagic ecosystems along the Chilean coast is also required.

     

Decimation of a population of the endangered species Scutellastra mexicana (Broderip and Sowerby, 1829) (Mollusca,Gastropoda) in the Marías Island (Eastern Ocean Pacific) Biosphere Reserve

1. Scutellastra mexicana is the largest known patellid limpet species and probably is one of the most endangered marine invertebrates.
2. The species was once distributed along the American Pacific coast from Mexico to Peru, but their large size (up to 35 cm long) and easy accessibility (shallow sublittoral), made it very vulnerable to human collection and now is extinct on most of the mainland Mexican coast.
3. In August 2017, a large population of this species was found on María Cleofas island, off the coast of west‐central Mexico (Marías Archipelago, Pacific Ocean). This constitutes the only report of a population of this species since 1988.
4. A total of 808 adult individuals of up to 26 cm in length and 20 cm in width were estimated, together with the presence of juveniles, suggesting that it is a self‐sustaining population. The population was monitored in August 2017 and August 2018.
5. Although the species is under the category ‘Special Protection’ in the General Mexican Wild Law, and that María Cleofas island is a Biosphere Reserve, fishermen that operate with impunity in the area decimated the limpet population within a year of its discovery. Abundance in the shallowest area decreased significantly from 120 individuals per transect (65 m long and 2.75 m wide) in August 2017 to 48 individuals in August 2018, and the estimated adult population decreased from 808 to 304 limpets.
6. Neither passive national conservation policies nor local practices have reduced current threats to biodiversity and resource depletion in Marías Archipelago. Protected areas like this are ‘paper parks’—parks in name only—because there is no active conservation strategy or protection of marine species.