RhizoTubes as a new tool for high throughput imaging of plant root development and architecture: test,comparison with pot grown plants and validation

Background

In order to maintain high yields while saving water and preserving non-renewable resources and thus limiting the use of chemical fertilizer, it is crucial to select plants with more efficient root systems. This could be achieved through an optimization of both root architecture and root uptake ability and/or through the improvement of positive plant interactions with microorganisms in the rhizosphere. The development of devices suitable for high-throughput phenotyping of root structures remains a major bottleneck.

Results

Rhizotrons suitable for plant growth in controlled conditions and non-invasive image acquisition of plant shoot and root systems (RhizoTubes) are described. These RhizoTubes allow growing one to six plants simultaneously, having a maximum height of 1.1 m, up to 8 weeks, depending on plant species. Both shoot and root compartment can be imaged automatically and non-destructively throughout the experiment thanks to an imaging cabin (RhizoCab). RhizoCab contains robots and imaging equipment for obtaining high-resolution pictures of plant roots. Using this versatile experimental setup, we illustrate how some morphometric root traits can be determined for various species including model (Medicago truncatula), crops (Pisum sativum, Brassica napus, Vitis vinifera, Triticum aestivum) and weed (Vulpia myuros) species grown under non-limiting conditions or submitted to various abiotic and biotic constraints. The measurement of the root phenotypic traits using this system was compared to that obtained using “classic” growth conditions in pots.

Conclusions

This integrated system, to include 1200 Rhizotubes, will allow high-throughput phenotyping of plant shoots and roots under various abiotic and biotic environmental conditions. Our system allows an easy visualization or extraction of roots and measurement of root traits for high-throughput or kinetic analyses. The utility of this system for studying root system architecture will greatly facilitate the identification of genetic and environmental determinants of key root traits involved in crop responses to stresses, including interactions with soil microorganisms.

     

Synthesis and insecticidal evaluation of imidacloprid analogs

Imidacloprid analogues containing a nitroalkylidene instead of a nitroguanidine unit have been prepared and evaluated for investigation as potential insecticides. No nitroalkylidene analogue showed significant activity against the test insects. © 1998 Society of Chemical Industry     

Lactogenic immunity to transmissible gastroenteritis (TGE) of swine induced by the attenuated Nouzilly strain of TGE virus: passive protection of piglets and detection of serum and milk antibody classes by ELISA

Piglets of eight sows vaccinated by different routes with the attenuated TGE mutant coronavirus, Nouzilly (N) strain, and piglets from two field seropositive sows were challenged with a virulent TGE strain. On the day of challenge and 10 days after challenge, milk and serum samples from sows were analysed for their level of neutralizing antibodies, total immunoglobulin classes and TGE antibody classes by an ELISA. No direct relationship was seen between the level of protection of the litters and the titres of the different antibody classes on the day of challenge. However, an inverse correlation was seen 10 days after challenge between protection and the level of TGE antibodies.     

Plasma cell pododermatitis in a cat

Plasma cell pododermatitis, an uncommon disease of unknown etiology, is described in a six year old male domestic short-haired cat. The cat was referred with a history of lameness associated with swelling, softness and ulceration of the foot pads. The history suggested a seasonal occurrence of the condition. The dermis and subcutis of the foot pads were infiltrated by inflammatory cells which were mainly plasma cells. The large number of plasma cells present in the lesions suggests an immunological basis for the condition.     

Spatial patterns of shrub cover after different fire disturbances in the Pyrenees

? Woody encroachment into grasslands is a worldwide phenomenon. In the Pyrenees, fire has been used as a management tool to transform part of the encroached land to grassland.

? This study aims to compare the spatial patterns of shrub cover 4 y after 4 different fire disturbances (prescribed burning, repeated prescribed burning, wildfire in 20 year-old shrubs and wildfire in 5 year-old shrubs); and also to compare shrub cover after different fire disturbances, accounting for spatial autocorrelation. The study focuses on the shrub Cytisus balansae. Two-dimensional transects (20 × 0.5 m) were established to monitor shrub cover for 4 y after each disturbance type. Autoregressive models and Markov models were used with a Monte Carlo procedure to account for the presence of spatial autocorrelation.

? Shrub cover was greater after prescribed burning than after repeated prescribed burning, and it increased with shrub age before disturbance. Differences in spatial patterns were detected in shrub patch size, with repeated prescribed fires and wildfires reducing shrub patch size by half in comparison with prescribed burning.

? From the management point of view, the effects of repeated prescribed burning were similar to those of a wildfire on reducing shrub cover and shrub patch size.

     

Modeling multi-scale spatial ecological processes under the discrete event systems paradigm

A multi-scale spatial ecological model of a wet sclerophyllous forest subject to recurrent fires is presented. The model is specified in a Discrete Event Systems framework (DEVS) (Zeigler, 1990) interfaced with a Geographic Information System (GIS), and includes the ability to simulate landscape dynamics at several levels of resolution simultaneously. This is achieved by encoding a modular hierarchical representation of the forest landscape components into a set of nested, interconnected, and spatially referenced dynamic models. The results of the landscape dynamics simulations are displayed as sequences of maps through time, illustrating the potential of this modeling methodology for dealing with complex hierarchical structures that operate at several spatial and temporal resolutions.Research work supported by Junta Nacional de Investigaçäo Científica e Tecnológica, Portugal, and the Advanced Resource Technology Program, University of Arizona, USA.     

Phytomass estimation using eMODIS NDVI and ground data in arid rangelands of Morocco

The assessment of rangeland productivity in semi-extensively grazed arid rangelands is a prerequisite for livestock management in relation to sustainable use of pastoral resources. The objective of this study was to assess rangeland productivity based on normalised difference vegetation index (NDVI) images. Data on phytomass were measured on 61 field samples in arid rangelands of Morocco, covering various rangeland categories during autumn (November) and spring (April), i.e. when phytomass is at low and high levels, respectively, for two consecutive years (2008 and 2009). Dekadal EROS Moderate Resolution Imaging Spectroradiometer (eMODIS) NDVI data were linearly regressed to field measurements for these four periods. Results show that phytomass values were correlated with NDVI during spring, with R² and RMSE values of 0.82 and 0.3 t ha^?1, respectively. This study indicates there is a high potential for operational use of remotely sensed data to estimate rangeland phytomass of semi-extensively grazed rangelands.