Structural basis for substrate delivery by acyl carrier protein in the yeast fatty acid synthase

In the multifunctional fungal fatty acid synthase (FAS), the acyl carrier protein (ACP) domain shuttles reaction intermediates covalently attached to its prosthetic phosphopantetheine group between the different enzymatic centers of the reaction cycle. Here, we report the structure of the Saccharomyces cerevisiae FAS determined at 3.1 angstrom resolution with its ACP stalled at the active site of ketoacyl synthase. The ACP contacts the base of the reaction chamber through conserved, charge-complementary surfaces, which optimally position the ACP toward the catalytic cleft of ketoacyl synthase. The conformation of the prosthetic group suggests a switchblade mechanism for acyl chain delivery to the active site of the enzyme.     

Candidatus Chloracidobacterium thermophilum: an aerobic phototrophic Acidobacterium

Only five bacterial phyla with members capable of chlorophyll (Chl)-based phototrophy are presently known. Metagenomic data from the phototrophic microbial mats of alkaline siliceous hot springs in Yellowstone National Park revealed the existence of a distinctive bacteriochlorophyll (BChl)-synthesizing, phototrophic bacterium. A highly enriched culture of this bacterium grew photoheterotrophically, synthesized BChls a and c under oxic conditions, and had chlorosomes and type 1 reaction centers. "Candidatus Chloracidobacterium thermophilum" is a BChl-producing member of the poorly characterized phylum Acidobacteria.     

Comparative metagenomics of microbial communities

The species complexity of microbial communities and challenges in culturing representative isolates make it difficult to obtain assembled genomes. Here we characterize and compare the metabolic capabilities of terrestrial and marine microbial communities using largely unassembled sequence data obtained by shotgun sequencing DNA isolated from the various environments. Quantitative gene content analysis reveals habitat-specific fingerprints that reflect known characteristics of the sampled environments. The identification of environment-specific genes through a gene-centric comparative analysis presents new opportunities for interpreting and diagnosing environments.     

The development of soil organic carbon under young black locust (Robinia pseudoacacia L.) trees at a post-mining landscape in eastern Germany

The aim of this study was to evaluate the potential of short rotation alley cropping systems (SRACS) to improve the soil fertility of marginal post-mining sites in Brandenburg, Germany. Therefore, we annually investigated the crop alleys (AC) and black locust hedgerows (ABL) of a SRACS field trail under initial soil conditions to identify the short-term effects of tree planting on the storage of soil organic carbon (SOC) and its degree of stabilization by density fractionation. We detected a significant increase in SOC and hot-water-extractable organic C (HWEOC) at ABL, which was mainly restricted to the uppermost soil layer (0–10 cm). After 6 years, the SOC and HWEOC accumulation rates at ABL were 0.6 Mg and 46 kg ha^?1 year^?1, which were higher than those in the AC. In addition, comparatively high stocks of approximately 4.6 Mg OC and 182 kg HWEOC ha^?1 were stored in the ABL litter layer. Density fractionation of the 0–3 cm soil layer at ABL revealed that the majority of the total SOC (47%) was stored in the free particulate organic matter fraction, which was more than twice that of the AC. At the same time, a higher and steadily increasing amount of SOC was stored in the occluded particulate organic matter fraction at ABL, which indicated a high efficiency for SOC stabilization. Overall, our findings support the suitability of black locust trees for increasing the soil fertility of the reclaimed mining substrate and, consequently, the high potential for SRACS to serve as an effective recultivation measure at marginal sites.

     

Fibroblast adhesion on unidirectional polymeric nanofilms

Nanotextured polymeric surfaces with inclined rods reveal highly anisotropic properties concerning wetting and adhesion. In this work, we report on the interaction of fibroblast cells with these highly anisotropic materials. The authors quantified removal of adherent cells from such surfaces by a laminar flow. The critical shear force needed for cell removal from the surface depends on the inclination direction. Based on electron microscopy cross sections we deduce that interactions of cellular filopodia extending into the nanotextured surface are causing the direction depending removal.     

Biomimetic assembly of polyelectrolyte multilayers containing phosvitin monitored with reflectometric interference spectroscopy

Coatings of biomaterials or implants that facilitate biomineralization possess a great potential for applications focused to the replacement, augmentation, and regeneration of bone tissue. Biomimetic approaches utilize biomolecules for either templating or supporting the crystallization process. One of these promising biomolecules is phosvitin (PV), an egg yolk protein known to transport and store inorganic phosphates and calcium ions. The incorporation of PV into polyelectrolyte multilayers is favorable due to PVs high degree of phosphorylation and thus a high acidity. Utilizing the reflectometric interference spectroscopy, the adsorption kinetics of this novel polyelectrolyte system composed of poly-L-lysine and the heavily phosphorylated phosvitin were monitored. The results demonstrate an unexpected nonregular growth regime called overshoot. Effective measures of shifting this irregular polyelectrolyte adsorption process back to a regular multilayer growth regime are reported in this paper.     

Estimation of the Body Weight of Icelandic Horses

The body weight of horses is an interesting variable for horse owners, as well as for veterinarians. It is useful to have methods of estimation like weight tape or formula, rather than visual estimation, when a weight scale is not available. Different methods of weight estimation exist for adult horses, but to date, there has been no validation of these methods in Icelandic horses. Therefore, three different methods of weight determination (weight scale, weight tape, and weight formula) were compared in this study to investigate whether it is possible to obtain reliable weight measurements of Icelandic horses by using an estimation method. Both the weight pursuant to weight tape and pursuant to weight formula showed no significant differences (P = 1.00 and P = 0.37, respectively) from the actual weight. The correlation between estimated and actual weights was r = 0.94 for weight tape and r = 0.93 for weight formula. However, the differences between the estimated and actual weights were smallest when estimated using an adjusted weight formula: weight (kg) = girth² × length (both in cm)/11,400. In conclusion, the body weight of Icelandic horses can be estimated from the measurements of body girth and length, and weight tape also seems to be a suitable method.     

Quantitative Glucose Metabolism in Lactating Mink ( Mustela vison ) - Effects of Dietary Levels of Protein,Fat and Carbohydrates

Glucose metabolism was measured during two consecutive years, 4 weeks postpartum, in a total of 36 yearling female mink, fitted with jugular vein catheters and raising litters of six to seven kits. The dams were fed ad libitum from parturition on diets with different ratios of metabolizable energy (ME) derived from protein:fat:carbohydrates (experiment 1: 61:37:2, 46:37:17, 31:37:32; experiment 2: 61:38:1, 47:52:1, 33:66:1). After 3 h fasting the dams were fed 210 kJ ME of the experimental diets. Two hours postprandially a single dose of 50 w Ci U- 14 C- and 2- 3 H-labelled glucose was administered to each dam and blood samples were drawn 5, 10, 20, 30, 45 and 60 min after the tracer administration. Glucose turnover rates were 4-5% min -1 in all dams, and the approximate daily glucose flux was 12-17 g day -1 ; however, these were not significantly affected by dietary treatment. In conclusion, the mink is able both to synthesize large amounts of glucose de novo and to utilize high levels of dietary digestible carbohydrates, and thereby to tolerate large variations in dietary carbohydrate supply.     

Fatty Acid Metabolism in the Digestive Tract of Lactating Cows Fed Tallow in Increasing Amounts at Two Feed Levels

Abstract

Long-chain fatty acid metabolism in the digestive tract was studied in lactating cows fed at two levels of dry matter intake (L, 8.6 kg DM and H, 12.6 kg DM), with 0, 4 and 6% added tallow at low feed level (L0, L4 and L6), and 0, 2, 4 and 6% fat at high feed level (H0, H2, H4 and H6). Mean fatty acid balance from mouth to duodenum was about zero when corrected for endogenous fatty acids from bile. However, regression analysis showed a microbial synthesis of 68 g at zero fatty acid intake, and a trend which indicated declining de novo synthesis of fatty acids with increasing fat level in the diet. As a mean 68% of the unsaturated C18 fatty acids were hydrogenated in the rumen.

Fatty acid and crude fat true digestibilities decreased with increasing fat intakes owing to a decrease in stearic acid (C18:0) digestibility.     

The Influence of Tallow on Rumen Metabolism,Microbial Biomass Synthesis and Fatty Acid Composition of Bacteria and Protozoa

Abstract

Rumen metabolism, microbial biomass synthesis and microbial long chain fatty acid composition were studied in lactating cows fed at two levels of dry matter intake (L, 8.6 kg DM and H, 12.6 kg DM) with 0, 4 and 6% added tallow at the low feed level (L0, L4 and L6) and 0, 2, 4 and 6% at the high feed level (H0, H2, H4 and H6).

Fibre digestibility was not significantly affected by tallow addition. Increasing tallow level in the diet decreased the total VFA concentration, the ratio of acetic acid to propionic acid and the ammonia concentration in the rumen. Crude fat and fatty acid content in bacterial and protozoal dry matter increased with increased tallow level, especially due to an increase in fatty acids originating from the feeds. Microbial synthesis in the rumen and flow of amino acids to the duodenum was highest for medium fat intake at the high feed level.