Long-term sustainability of forest ecosystems on sandstone in the Vosges Mountains (France) facing atmospheric deposition and silvicultural change

Since the 1980s, atmospheric deposition acidity has generally decreased in European forest ecosystems. However, at many sites, little or no sign of recovery has been observed yet. Concerns are rising about the sustainability of these ecosystems because of reduced nutrients inputs in atmospheric deposition and the increase in biomass harvesting to supply bio-energy.We used a silver fir plot of the French monitoring network (RENECOFOR, site SP57) typical of the ecosystems on sandstone in the Vosges Mountains, to investigate its functioning and its response facing past and possible future changes. We (1) calculated 12-year-mean “input-output” nutrient budgets, (2) measured the change in soil exchangeable cations and anions, (3) used monitoring data to calibrate a process oriented biogeochemical model, NuCM, that was then used to (4) simulate the consequences of two main scenarios and their combinations: constant or reduced atmospheric deposition, and traditional or whole-tree harvesting.Mean term changes in exchangeable nutrients and input-output budgets showed a loss of exchangeable sulphate and base cations, the level of which depended on the method. This combined efflux induced an acidification of soil solution and an alkalinisation of the soil. The model NuCM was successfully calibrated and scenarios were implemented. A slight recovery was simulated when deposition was maintained constant but combined acid and nutrient atmospheric deposition reduction delayed recovery. Whole-tree harvesting drastically decreased soil fertility compared to traditional silviculture. Hence, biomass harvesting in forests on poor soils may counter recovery in the future.     

Sequence analysis of 43-year old samples of Plantago lanceolata show that Plantain virus X is synonymous with Actinidia virus X and is widely distributed

Plantain virus X was first recognized by the ICTV as a species in the genus Potexvirus in 1982. However, because no sequence was available for plantain virus X (PlVX), abolishing the species was proposed to the Flexiviridae working group of the ICTV in 2015. This initiated efforts to sequence the original isolates from Plantago lanceolata samples. Here we report the full-genome sequencing of two original isolates of PlVX, which demonstrate that the virus is synonymous to Actinidia virus X, a species previously reported from kiwifruit (Actinidia sp.) and blackcurrant (Ribes nigrum). PlVX was previously noted to be widespread in the UK in P. lanceolata. This report additionally presents novel data on the distribution and diversity of PlVX, collected at the same site as the original UK isolates, and from three independent surveys, two in the Netherlands and one in Belgium. This study also includes two new host records for PlVX, Browallia americana and Capsicum annuum (sweet pepper), indicating the virus is more widespread and infects a broader range of hosts than previously reported. This stresses the importance of surveys of noncultivated species to gain insight into viral distribution and host range. This study also demonstrates the value of generating sequence data for isolates retained in virus collections. Additionally, it demonstrates the potential value in prepublication data sharing for giving context to virus detections such as the four independent studies here which, when combined, give greater clarity to the identity, diversity, distribution, and host range of plantain virus X.     

Spatial distribution of Eucalyptus roots in a deep sandy soil in the Congo: relationships with the ability of the stand to take up water and nutrients

Spatial statistical analyses were performed to describe root distribution and changes in soil strength in a mature clonal plantation of Eucalyptus spp. in the Congo. The objective was to analyze spatial variability in root distribution. Relationships between root distribution, soil strength and the water and nutrient uptake by the stand were also investigated. We studied three, 2.35-m-wide, vertical soil profiles perpendicular to the planting row and at various distances from a representative tree. The soil profiles were divided into 25-cm2 grid cells and the number of roots in each of three diameter classes counted in each grid cell. Two profiles were 2-m deep and the third profile was 5-m deep. There was both vertical and horizontal anisotropy in the distribution of fine roots in the three profiles, with root density decreasing sharply with depth and increasing with distance from the stump. Roots were present in areas with high soil strength values (> 6,000 kPa). There was a close relationship between soil water content and soil strength in this sandy soil. Soil strength increased during the dry season mainly because of water uptake by fine roots. There were large areas with low root density, even in the topsoil. Below a depth of 3 m, fine roots were spatially concentrated and most of the soil volume was not explored by roots. This suggests the presence of drainage channels, resulting from the severe hydrophobicity of the upper soil.     

The effect of leucaena hay as a source of effective fibre and nutrients in diets with forage palm for finishing sheep in semi-arid regions

The present study was conducted to evaluate the intake, digestibility and nitrogen balance of diets for finishing sheep, containing leucaena hay as a source of effective fibre and forage palm. Twenty-one male sheep were used in a randomized block design with three treatments, represented by total diets, where the forage was leucaena hay and forage palm in natura in proportions 350:650, 450:550 and 550:450 g/kg respectively. For the pH and NH₃-N in the ruminal fluid, and urea in the blood serum, plots split in time were adopted. Dry matter and nutrient digestibility, and the nitrogen balance were not influenced (p > .05) by the diets. The neutral detergent fibre digestibility decreased (p < .05) as the proportions of leucaena hay in the diets increased. The pH and NH₃-N were suitable for ruminal fermentation, and blood urea was maintained under normal physiological conditions for sheep. Combining 350 to 550 g/kg of leucaena hay with 450 to 650 g/kg of forage palm in total diets with a forage:concentrate ratio of 60:40 in late-maturing sheep meets the nutritional requirements for daily gain 200 g, characterizing leucaena hay as important source of effective fibre and nutrients in diets.     

Molecular diversity and genome structure in modern sugarcane varieties

Summary RFLP analysis was performed on 40 sugarcane cultivated varieties. Twenty-two maize low copy DNA clones located on different regions of the 10 maize chromosomes were used as probes to survey variability among the sugarcane varieties. A total of 425 fragments, 411 of which were polymorphic, were identified for 22 probe/enzyme combinations. Each variety displayed an average of 7.28 fragments per combination, revealing the complex polyploid origin of modern sugarcane varieties. The average genetic similarity between sugarcane varieties was 0.61. Although cultivated varieties appear closely related to S. officinarum clones, the genes of S. spontaneum seem to constitute the principal component of varietal diversity. A very weak global structuring among the 40 varieties is observed, in agreement with the profuse exchanges of parental materials between sugarcane breeding stations. Traces of linkage disequilibrium can be attributed to the distribution of S. spontaneum chromosomes among sugarcane varieties. The possibility of using modern varieties as a population for detecting associations between molecular markers and agronomic traits is suggested.     

Antioxidants, phenolic compounds, and nutritional quality of different strawberry genotypes

Strawberry contains high levels of micronutrients and phytochemical compounds. These exhibit functional roles in plant growth and metabolism and are also essential for the nutritional and organoleptic qualities of the fruit. The aim of the present work was to better characterize the phytochemical and antioxidant profiles of the fruit of nine different genotypes of strawberry, by measuring the total flavonoid, anthocyanin, vitamin C, and folate contents. Cultivar effects on the total antioxidant capacities of strawberries were also tested. In addition, the individual contribution of the main antioxidant compounds was assessed by HPLC separation coupled to an online postcolumn antioxidant detection system. This study showed the important role played by the genetic background on the chemical and antioxidant profiles of strawberry fruits. Significant differences were found between genotypes for the total antioxidant capacity and for all tested classes of compounds. The HPLC analyses confirmed qualitative and quantitative variability in the antioxidant profiles. These studies show that differences exist among cultivars, applicable in dietary studies in human subjects.     

Soil aggregation may be a relevant indicator of nutrient cation availability

Key message

Aggregation was studied in two acidic forest soils (NE France) to investigate the potential link between available Ca and Mg content and soil aggregate size distribution and properties. Clay content influenced the aggregation status while clay mineralogy influenced aggregate stability and dynamics. Aggregation status and reactivity of soil components contributed to the difference of exchangeable Ca and Mg content in topsoil between the two sites.

Context

Though nutrient fluxes are important to define forest soil chemical fertility, the quantification of nutrient reservoirs in the soils and their availability to tree uptake is essential. A thorough understanding of nutrient availability requires an investigation of nutrient location and distribution in the soil solid phase.

Aims

The general aim was to investigate the potential link between available Ca and Mg content and soil aggregate size distribution and their properties (chemical, physical, mineralogical).

Methods

Soil aggregates were separated according to three size classes (200–2000 μm; 50–200 μm; <?50 μm) in two forest soils of the Lorraine plateau (France), both classified as Luvisols ruptic. The physical, chemical, and mineralogical properties were measured for each aggregate class.

Results

We showed that the relative abundance of an intermediate aggregate class [200–50 μm] was relevant to explain the difference of exchangeable Ca and Mg between sites. These aggregates were the poorest in organic and reactive mineral components and were unstable, which may mitigate the retention of Ca and Mg by ion-exchange.

Conclusion

This study highlights the role of aggregation and reactivity of soil components as relevant determinants of cation availability to tree uptake in soils.

     

IMAGING DIAGNOSIS—ULTRASOUND UNCOMMON FEATURES OF AN ABDOMINAL GOSSYPIBOMA IN A DOG

An abdominal mass was incidentally detected in a 12‐year‐old, neutered female, crossed breed dog. Abdominal ultrasonographic examination showed a well‐delineated, irregular, heterogeneous mass that did not generate any distal acoustic shadowing. Transcutaneous US‐guided biopsy of the mass were nonconclusive but raised the possibility of neoplasia. Surgery discovered a mass embedded in the omentum and a large quantity of surgical sponges were identified in cut section. To the authors’ knowledge, this represents the first published case of gossypiboma casting no characteristic distal acoustic shadowing.     

Evaluation of a modified Rose Bengal test and an indirect enzyme-linked immunosorbent assay for the diagnosis of Brucella melitensis infection in sheep

A modified Rose Bengal test (mRB) and an indirect ELISA (iELISA) with Protein G as the conjugate, were evaluated for the diagnosis of Brucella melitensis infection in unvaccinated sheep with a known bacteriological status, and their diagnostic efficacy was compared with that of the standard Rose Bengal (RB) and Complement Fixation (CF) tests used in the current eradication campaign in EU countries. All tests showed 100% specificity when testing the sera from 212 Brucella-free sheep. When testing the sera from 219 Brucella melitensis culture-positive sheep, both the mRB and iELISA tests were more sensitive (98.6% and 96.8%, respectively) than the RB and CF tests (95.0% and 92.7%, respectively). These results were similar when testing the sera from 181 animals belonging to infected flocks but found bacteriologically negative, suggesting that the mRB or iELISA tests could advantageously replace the current RB procedure used as the screening test.     

Evidence of Bartonella sp. in questing adult and nymphal Ixodes ricinus ticks from France and co-infection with Borrelia burgdorferi sensu lato and Babesia sp

Ticks are known vectors for a wide range of pathogenic microorganisms. Their role in the transmission of some others is so far only suspected. Ticks can transmit multiple pathogens, however, little is known about the co-existence of these pathogens within questing ticks. We looked for the presence of DNA from three micro-organisms, Bartonella sp., Borrelia burgdorferi sensu lato and Babesia sp. which are known or suspected tick-borne pathogens, using a cohort of 92 questing Ixodes ricinus ticks collected from pastures in northern France. DNA was extracted from each individual tick and the presence of the three pathogens was investigated using Polymerase Chain Reaction (PCR) amplification. Nine among 92 samples (9.8%) demonstrated PCR products using Bartonella specific primers, 3 among 92 (3.3%) using Borrelia burgdorferi sensu lato specific primers and 19 among 92 (20.6%) using Babesia specific primers. Seven among 92 samples (7.6%) were PCR positive for at least two of the pathogens and one sample was positive for all three. Adult ticks (12/18; 67%) showed significantly higher infection rates compared to nymphs (11/74; 15%) for all three pathogens (P < 0.001). This study is the demonstration of the simultaneous presence of Bartonella sp., Borrelia burgdorferi sensu lato and Babesia sp. in questing Ixodes ricinus ticks.