Intraspecific Relationship of Plasmopara halstedii Isolates Differing in Pathogenicity and Geographic Origin Based on ITS Sequence Data

Sequence parts of the internal transcribed spacer (ITS) region of nuclear ribosomal DNA were analysed to screen for the intraspecific variability of a non-coding genomic region in 15 Plasmopara halstedii populations of different pathotype and geographic origin. Samples revealed uniformity in a ca. 790 Bp fragment comprising of the ITS-1, 5.8S and front parts of the ITS-2. In contrast, clear differences were found in a ca. 810 Bp fragment of the ITS-2 thus allowing differentiation between populations of pathotype 100, 310 and 330 and a group of populations representing pathotypes 700, 701, 703, 710 and 730. Samples of pathotypes 700 to730 originated from Slovakia, France, and Germany, but were uniform in both ITS sequence parts, thus indicating very recent origin of these highly aggressive physiological races. The potential use of ITS sequences for pathotype differentiation and phylogenetic studies in P. halstedii is discussed.     

Suppression of Rice Blast by Preinoculation with Avirulent Pyricularia oryzae and the Nonrice Pathogen Bipolaris sorokiniana

ABSTRACT Avirulent isolates of Pyricularia oryzae and isolates of Bipolaris sorokiniana, a nonrice pathogen, were used to suppress rice blast caused by P. oryzae. In greenhouse experiments, both fungi substantially reduced leaf blast when applied 24 h or more before the pathogen. B. sorokiniana, but not avirulent isolates of P. oryzae, systemically reduced disease in leaf 5 when applied to whole plants at the four-leaf stage. In field experiments, both fungi were able to reduce neck blast significantly. No increase in grain yield was obtained by using avirulent isolates of P. oryzae, whereas five sprays with B. sorokiniana from seedling to heading stages increased the grain yield in two of three experiments conducted at two locations in Nepal. The significant increase in yield was observed under high inoculum pressure of P. oryzae. Induced resistance is suggested to be involved in the suppression of disease.     

Summary of workshop findings for porcine adhesion molecule subgroup

Fifty-nine monoclonal antibodies (mAb) were assigned to the adhesion section of the Second International Swine CD Workshop. They were analysed for their reactivity to selected lymphoid cell populations, as well as to non-lymphoid cell lines. Cell lysate ELISAS and Western Blot analyses were also carried out. As a result, thirteen separate cluster groups emerged (p>0.95). Workshop assignments for adhesion molecules were made: wCD29/49 for mAbs UCP1D2 (#133) and FW4-101 (#165), and PNK-I (#194) and MUC76A (#025) could be assigned to wCD18. For one cluster (FQ1D7, #161 and 2F4, #069) the cellular distribution and MW were characteristic for MHC Class II, and another cluster comprising several antibodies which appeared to recognise MHC Class I. Other clusters could not be assigned to cell surface structures known to be linked to cellular adhesion, however, two further antibodies, 335-2 (#112) and FG1F6 (#156), could be added to SWC1, and the new SWC8 was defined by MIL3 (#077) and MUC20A (#029), binding a ligand of 29–32 kDa. Clustering for these two antibodies was confirmed by blocking studies. The cellular distribution is known for MIL3, recognising an epitope present on granulocytes, B cells, and a subset of T cells expressing CD8 at high intensity.     

Olfactory and quantitative analysis of aroma compounds in elder flower (Sambucus nigra L.) drink processed from five cultivars

Fresh elder flowers (Sambucus nigra L.) were extracted with an aqueous solution containing sucrose, peeled lemon slices, tartaric acid, and sodium benzoate to make elder flower syrup. Aroma compounds emitted from the elder flower syrup were collected by the dynamic headspace technique and analyzed by GC-FID and GC-MS. A total of 59 compounds were identified, 18 of which have not previously been detected in elder flower products. The concentrations of the identified volatiles were measured in five elder cultivars, Allesoe, Donau, Sambu, Sampo, and Samyl, and significant differences were detected among cultivars in the concentration levels of 48 compounds. The odor of the volatiles was evaluated by the GC-sniffing technique. cis-Rose oxide, nerol oxide, hotrienol, and nonanal contributed to the characteristic elder flower odor, whereas linalool, alpha-terpineol, 4-methyl-3-penten-2-one, and (Z)-beta-ocimene contributed with floral notes. Fruity odors were associated with pentanal, heptanal, and beta-damascenone. Fresh and grassy odors were primarily correlated with hexanal, hexanol, and (Z)-3-hexenol.     

Dissolved organic matter leaching in some contrasting New Zealand pasture soils

Leaching of dissolved organic matter (DOM) from pastoral soils is increasingly seen as an important but poorly understood process. This paper examined the relationship between soil chemical properties, microbial activity and the losses of dissolved organic carbon (DOC) and nitrogen (DON) through leaching from six pasture soils. These soils differed in carbon (C) (4.6–14.9%) and nitrogen (N) (0.4–1.4%) contents and in the amount of organic C and N that had accumulated or been lost in the preceding 20+ years (i.e. −5131 to +1624 kg C ha⁻¹ year⁻¹ and −263 to +220 kg N ha⁻¹ year⁻¹, respectively). The paper also examined whether between‐soil‐type differences in DOC and DON leaching was a major explanatory factor in the observed range of soil organic matter (SOM) changes in these soils. Between 280 and 1690 kg C ha⁻¹ year⁻¹ and 28–117 kg N ha⁻¹ year⁻¹ leached as DOC and DON, respectively, from the six soils in a lysimeter study, with losses being greater from two poorly drained gley soils. Losses of C and N of this magnitude, while at the upper end relative to published data, could not fully explain the losses at Rawerawe, Bruntwood and Lepperton sites reported by Schipper et al. (2007) . The study highlights the leaching of DOM as a significant pathway of loss of C and N in pasture soils that is often ignored or given little attention in predictive models and nutrient budgeting. Leaching losses of DOC and DON alone, or in combination with slightly increased respiration losses of SOM given a 0.2°C increase in the mean annual soil temperature, do not fully explain long‐term changes in the SOM observed at these sites. When soils examined in the present study were separated on the basis of drainage class, the losses of DOC by leaching were correlated with both total and hot‐water extractable C (HWC), the latter being a measure of the labile SOM fraction. Basal microbial CO₂ respiration rates, which varied between 1 and 3.5 µg CO₂‐C g⁻¹ soil hour⁻¹ in surface soils (0–75‐mm depth), was also linked to HWC and the quantities of C lost as DOC. Adoption of the HWC method as an approach that could be used as a proxy for the direct measurement of the soil organic C lost by leaching as DOC or respired needs to be examined further with a greater number of soils. In comparison, a poor relationship was found between the hot‐water extractable N (HWN) and loss of DON by leaching, despite HWN previously being shown to be a measure of the mineralizable pool of N in soils, possibly reflecting the greater competition for N than C in these soils.     

Occurrence of Heterobasidion basidiocarps on cull pieces of Norway spruce left on cutting areas and in mature spruce stands

Fruiting of Heterobasidion on cull pieces and stumps of Norway spruce was investigated in cutting areas and mature spruce stands located in southern Finland. Cull pieces of variable size and showing butt rot were left on three clear‐cut areas and in one thinned stand. Additionally, a part of the cull pieces was transported to mature forest sites with closed canopy. During the succeeding 3–4 years the cull pieces were investigated annually for sporocarps of Heterobasidion, and the area of actively sporulating pore layer of each sporocarp was measured. Root bases of spruce stumps in the logging areas were excavated and sporocarps found on the stumps also measured. At the onset of the experiment, Heterobasidion spp. were isolated from 76% of the cull pieces showing butt rot; 85% of the isolates were identified as H. parviporum and 15% as H. annosum s.s. During the following 3–4 years sporocarps were found on 20% of the 1938 cull pieces where Heterobasidion butt rot was initially detected visually. Sporocarp formation was promoted by advancement of butt rot, increasing cull piece diameter and end‐to‐end ground contact, but restricted by the colonization of the cull piece by Stereum sanguinolentum. Between‐site differences were significant but could not be explained by differences in tree cover. At the end of the investigation period the average sporulating area of Heterobasidion sporocarp per metre of cull piece was higher than the average sporulating area per stump at three of four logging sites. Hence, leaving cull pieces containing Heterobasidion butt rot at logging areas in southern Finland can considerably increase local production of Heterobasidion spores.     

Real-space observation of molecular motion induced by femtosecond laser pulses

Femtosecond laser irradiation is used to excite adsorbed CO molecules on a Cu110 surface; the ensuing motion of individual molecules across the surface is characterized on a site-to-site basis by in situ scanning tunneling microscopy. Adsorbate motion both along and perpendicular to the rows of the Cu110 surface occurs readily, in marked contrast to the behavior seen for equilibrium diffusion processes. The experimental findings for the probability and direction of the molecular motion can be understood as a manifestation of strong coupling between the adsorbates' lateral degrees of freedom and the substrate electronic excitation produced by the femtosecond laser radiation.     

A longitudinal study on growth and growth variables in dogs of four large breeds raised in domestic environments

The main objective of this study was to describe the growth patterns of 4 large dog breeds [Newfoundland (NF), Labrador retriever (LR), Leonberger (LEO), and Irish wolfhound (IW)] raised in domestic environments and concomitant changes in 2 growth-related clinical variables: total serum alkaline phosphatase (ALP) and the circumference of the distal radius and ulna (CDRU). The second objective was to investigate whether these measurements were affected by a range of independent variables like age, sex, litter number, and birth weight. Seven hundred dogs were included in the study, and BW data, separated by breed and sex, were fitted to the Gompertz function. Birth weight, adjusted for litter number, differed significantly between sexes for 3 breeds (LEO, P = 0.004; NF, P = 0.02; LR, P = 0.009) and approached significance for IW (P = 0.07). Estimated mean BW increased rapidly during the first 100 d after birth in all 4 breeds, then plateaued, with maturity being reached between 351 (female LR) and 413 d (male NF). Estimated mature BW ranged from 30.8 kg for the female LR up to 65.7 kg for the male IW. Weight gain, as expressed by the derivative of the Gompertz function, reached its peak in the smallest breed (LR) at the youngest age, 89 d for the females and 95 d for males. Log-transformed BW was significantly related to age, breed, and sex, and the age x sex and age x breed interactions. Within breeds, age, birth weight, and litter number had a significant effect on log-transformed BW. The estimated average CDRU increased from 90 d of age toward a peak at 180 d. Thereafter, CDRU declined and stabilized at about 1 yr of age. The estimated total ALP concentrations decreased from 90 to 360 d of age, after which they stabilized, at mean concentrations varying among breeds from 98 to 131 IU/L. Maximum least squares mean total ALP concentrations were found at 3 mo of age in all breeds, with the greatest least squares mean concentration in the IW breed (713 IU/L). In a mixed model analysis of the complete data set, total ALP was affected (P < 0.001) by age, breed, and the interaction of age x breed. This study described the main factors influencing growth and provided reference data for other studies, including those related to nutrition and disorders of growth.     

Effects of Afforestation on Acidity and Invertebrates in Danish Streams and Implications for Freshwater Communities in Denmark

The relationship between acidity and benthic invertebrate communities was investigated in two small streams in coniferous forests in central Jutland, Denmark, during 1992 and 1993. Stream pH was acid (mean pH 4.8 and 5.4) and alkalinity fluctuated greatly with mean values around zero. During rain events, water from springfed reaches upstream were mixed downstream with brown humic acid water with high aluminium content, and pH declined from circumneutral near the springs down to pH below 4 over a very short distance (0.5–1.5 km). The benthic invertebrate communities in the most acidic downstream reaches of both streams were dominated by filipalpian stoneflies, mainly Leuctra nigra (Olv.). Community composition remained very similar throughout the sampling period despite variations in pH. In the upper (neutral) reaches invertebrates intolerant of low pH such as Gammarus pulex L. were found. The concentrations of chloride and sulphate in the streams were more than double the concentrations in a nearby moorland stream indicating a strong impact of acidifying atmospheric deposition on the two forest streams. Results of this study indicate that afforestation with conifers on sandy Danish soils with low buffering capacity (about 25% of the total Danish land area) may lead to an increased acidification of surface waters and thereby also to an impoverished aquatic fauna.