Quantifying patch distribution at multiple spatial scales: Applications to wildlife-habitat models

Multiscale analyses are widely employed for wildlife-habitat studies. In most cases, however, each scale is considered discrete and little emphasis is placed on incorporating or measuring the responses of wildlife to resources across multiple scales. We modeled the responses of three Arctic wildlife species to vegetative resources distributed at two spatial scales: patches and collections of patches aggregated across a regional area. We defined a patch as a single or homogeneous collection of pixels representing 1 of 10 unique vegetation types. We employed a spatial pattern technique, three-term local quadrat variance, to quantify the distribution of patches at a larger regional scale. We used the distance at which the variance for each of 10 vegetation types peaked to define a moving window for calculating the density of patches. When measures of vegetation patch and density were applied to resource selection functions, the most parsimonious models for wolves and grizzly bears included covariates recorded at both scales. Seasonal resource selection by caribou was best described using a model consisting of only regional scale covariates. Our results suggest that for some species and environments simple patch-scale models may not capture the full range of spatial variation in resources to which wildlife may respond. For mobile animals that range across heterogeneous areas we recommend selection models that integrate resources occurring at a number of spatial scales. Patch density is a simple technique for representing such higher-order spatial patterns.     

Germline mutations in genes within the MAPK pathway cause cardio-facio-cutaneous syndrome

Cardio-facio-cutaneous (CFC) syndrome is a sporadic developmental disorder involving characteristic craniofacial features, cardiac defects, ectodermal abnormalities, and developmental delay. We demonstrate that heterogeneous de novo missense mutations in three genes within the mitogen-activated protein kinase (MAPK) pathway cause CFC syndrome. The majority of cases (18 out of 23) are caused by mutations in BRAF, a gene frequently mutated in cancer. Of the 11 mutations identified, two result in amino acid substitutions that occur in tumors, but most are unique and suggest previously unknown mechanisms of B-Raf activation. Furthermore, three of five individuals without BRAF mutations had missense mutations in either MEK1 or MEK2, downstream effectors of B-Raf. Our findings highlight the involvement of the MAPK pathway in human development and will provide a molecular diagnosis of CFC syndrome.     

Quantifying patch distribution at multiple spatial scales: Applications to wildlife-habitat models

Multiscale analyses are widely employed for wildlife-habitat studies. In most cases, however, each scale is considered discrete and little emphasis is placed on incorporating or measuring the responses of wildlife to resources across multiple scales. We modeled the responses of three Arctic wildlife species to vegetative resources distributed at two spatial scales: patches and collections of patches aggregated across a regional area. We defined a patch as a single or homogeneous collection of pixels representing 1 of 10 unique vegetation types. We employed a spatial pattern technique, three-term local quadrat variance, to quantify the distribution of patches at a larger regional scale. We used the distance at which the variance for each of 10 vegetation types peaked to define a moving window for calculating the density of patches. When measures of vegetation patch and density were applied to resource selection functions, the most parsimonious models for wolves and grizzly bears included covariates recorded at both scales. Seasonal resource selection by caribou was best described using a model consisting of only regional scale covariates. Our results suggest that for some species and environments simple patch-scale models may not capture the full range of spatial variation in resources to which wildlife may respond. For mobile animals that range across heterogeneous areas we recommend selection models that integrate resources occurring at a number of spatial scales. Patch density is a simple technique for representing such higher-order spatial patterns.     

Optimizing the lighting regime for Alstroemeria with respect to photoperiod and fluence rates

The Alstroemeria cultivars Diamond, King Cardinal and Libelle were grown for 18 months under five lighting regimes with, and without, soil cooling. The aim was to optimize the daily investment of light energy from artificial sources with respect to photoperiod and photosynthetic fluence rates and to elucidate possible links between reactions to photoperiod and root-zone temperature. The more photons (photosynthetically active radiation, PAR) that were supplied to the plants per day (8, 11 and 13 mol m⁻²), the higher was the total production of flowering stems. The total yield from regimes with 13 mol m⁻² day⁻¹ was higher when the light was spread over 20 and 16 h compared to 12 h. In treatments with soil cooling, the plants flowered continuously under all combinations of photoperiods and photosynthetic fluence rates, and the summer and autumn recession in flower production that occurred for non-cooled ‘King Cardinal' and ‘Diamond' was the same under all lighting regimes. It is concluded that it might be more cost-effective to spread the daily investment of light over 20 rather than 16 or 12 h when the total energy budget and CO₂ costs are taken into consideration.     

Butterfly dispersal in farmland: a replicated landscape genetics study on the meadow brown butterfly (<Emphasis Type="Italic">Maniola jurtina</Emphasis>)

Context

Anthropogenic activities readily result in the fragmentation of habitats such that species persistence increasingly depends on their ability to disperse. However, landscape features that enhance or limit individual dispersal are often poorly understood. Landscape genetics has recently provided innovative solutions to evaluate landscape resistance to dispersal.

Objectives

We studied the dispersal of the common meadow brown butterfly, Maniola jurtina, in agricultural landscapes, using a replicated study design and rigorous statistical analyses. Based on existing behavioral and life history research, we hypothesized that the meadow brown would preferentially disperse through its preferred grassy habitats (meadows and road verges) and avoid dispersing through woodlands and the agricultural matrix.

Methods

Samples were collected in 18 study landscapes of 5 × 5 km in three contrasting agricultural French regions. Using circuit theory, least cost path and transect-based methods, we analyzed the effect of the landscape on gene flow separately for each sex.

Results

Analysis of 1681 samples with 6 microsatellites loci revealed that landscape features weakly influence meadow brown butterfly gene flow. Gene flow in both sexes appeared to be weakly limited by forests and arable lands, whereas grasslands and grassy linear elements (road verges) were more likely to enhance gene flow.

Conclusion

Our results are consistent with the hypothesis of greater dispersal through landscape elements that are most similar to suitable habitat. Our spatially replicated landscape genetics study allowed us to detect subtle landscape effects on butterfly gene flow, and these findings were reinforced by consistent results across analytical methods.

     

The effects of different maternal dietary iodine concentrations on Japanese quail II. Thyroid function in embryos and hatchlingsi

Embryos (day I4 of the 16.5 day incubation period) and I day old chicks of Japanese quail (Coturnix japonica) were used to study the effects of egg I on thyroid development. The maternal diets were supplemented with 0–1200 μg I/kg of purified diet. Thyroid function, of embryos and chicks (before feeding), adapted to a wide range of egg I availability.We measured body weights, thyroid weights, thyroidal ¹²⁵I uptakes, stable I concentrations in thyroid glands and triiodothyronine (T₃) and thyroxine (T₄) concentrations in the serum.With low egg I (maternal diets with <50 μg I/kg) embryonic and chick thyroid glands were hypertrophied, thyroidal I content was very low and thyroidal radioiodine uptakes were high. Serum hormone concentrations were not significantly different from those of embryos and chicks from eggs with higher I contents. Thyroid weights were lowest in young from eggs of hens on the 150 μg I/kg diet, and the other variables studied also indicated this maternal diet provided sufficient egg I for the thyroid function of embryos and hatchlings.With high egg I (maternal diets with 300–1200 μg I/kg) thyroidal radioiodine uptakes were low but thyroidal I incorporation was related to egg I content. Serum hormone concentrations were not significantly altered by high I availability except that serum T₄ concentrations differed in a comparison of the extremes (0 vs 1200 μg I/kg in the maternal diet). As expected, from the consistency of serum hormone concentrations, embryonic growth was not affected by the I content of the eggs.In agreement with earlier studies on quail hens, our results indicate that feed supplementation of 150 μg I/kg is sufficient to meet needs without requiring alterations in thyroid function to maintain serum hormone concentrations. Developing thyroid glands adapt effectively to egg I concentrations of 0.2 to 4.1 μg I/g yolk which result from maternal diets with 0–1200 μg I/kg.     

Evaluation of Plant and Animal Source Proteins for Replacement of Fish Meal in Practical Diets for the Largemouth Bass Micropterus salmoides

Two feeding trials were conducted with juvenile largemouth bass Micropterus salmoides to evaluate alternative plant and animal source proteins for their ability to replace fish meal in practical diets. The first trial was designed to identify the most promising candidates. The second trial was conducted to evaluate how much of the fish meal could be replaced by those candidates. In Study 1, feed‐trained largemouth bass (3.1 ± 0.7 g) were randomly stocked into 18114‐L glass aquaria at 25 fish per aquarium. Fish were fed one of six experimental diets, each containing approximately 38% crude protein and 10% crude lipid, to apparent satiation twice daily. The control diet (CTL) contained 30% fish meal and 34.5% soybean meal. Diets 2–6 each contained 15% fish meal and at least 34.5% soybean meal with the remainder of the protein made up of either meat and bone meal (MBM), soybean meal (SBM), poultry by‐product meal (PBM), a 50150 mixture of blood meal and corn gluten meal (BM/CG), or 50150 mixture of hydrolyzed feather meal and soybean meal (FMISBM). There were three replicate aquaria per dietary treatment. After 12 wk, there was no significant difference (P > 0.05) among treatments in survival which averaged 92% overall. Only fish fed the PBM or BM/CG diets had average individual weights and feed conversion efficiencies that were not significantly different (P > 0.05) from the control diet (CTL). In Study 2, the formulation of the control diet (CTL) remained the same. Based on their performance in the first trial, PBM and BM/CG were chosen to now replace 75 or 100% of the fish meal. Fish were stocked at an average weight of 6.9 ± 1.7 g. After 11 wk, fish fed diets containing the BM/CG mixture at both levels were significantly smaller (P 5 0.05) than fish fed other diets and at 100% replacement survival was reduced. Fish fed diets containing poultry meal as the primary protein source performed as well as those fed the control diet (CTL). It appears that PBM can completely replace fish meal in diets for juvenile largemouth bass without adverse effects on growth, feed efficiency, or body composition.     

Comparison of leaf and pod disease reactions of beans (Phaseolus vulgaris L.) inoculated by different methods with strains of Xanthomonas campestris pv. Phaseoli (Smith) dye

Summary Common blight disease in beans (Phaseolus vulgaris), caused by the bacterium Xanthomonas campestris pv. phaseoli, reduces crop yield and seed quality. Information is needed on the variation of leaves and pods disease reaction to strains of the bacterium after different inoculation methods. Phaseolus vulgaris cultivars Red Kidney Charlevoix, GN Harris, GN 1140, and GN Emerson were inoculated with three different strains of Xanthomonas campestris pv. phaseoli at two inoculum concentrations (10⁸ and 10⁶ bacterial cells/ml) using water soaking, multiple needle, and razor blade inoculation on leaves, and razor blade scratch, dissecting needle, and razor blade cut inoculation on pods. Differential cultivar disease reactions of leaves, pods, or both to the bacterial strains were observed in some cases. Significant interactions among cultivars, inoculation methods, strains, and inoculum concentrations (leaves) were found. A rapid leaf chlorosis developed 6 to 7 days after inoculation. Strains of bacteria did not show specificity in inducing this reaction, but rapid leaf chlorosis was associated with high inoculum concentration and with the water soaking and multiple needle methods. Another experiment was conducted to count the number of living bacterial cells deposited in the leaf tissue after inoculation by different methods. The number of bacteria deposited by water soaking or multiple needle was higher than that deposited by razor blade.Published as Paper No. 8584, Journal Series, Nebraska Agricultural Experiment Station. Research was conducted under Project No. 20–36.     

Durum wheat landraces from Syria

Syrian durum wheat landraces from diverse collection sites were evaluated for agronomic performance under arid conditions over two seasons at four locations, at two levels of nutrient availability.Grain yield differed considerably among locations. Within locations, significant population and fertilizer effects were demonstrated. In most cases, maximum yield was achieved by landraces, which demonstrates the breeding value of local germplasm. In a particular environment, the population effect was nonsignificant for total dry matter production, but significant for straw and grain yield. Nitrogen application was ineffective if moisture availability was the dominant growth limiting factor.Correlations between plant characteristics at evaluation and collection site characteristics were limited, and therefore, their utilization in germplasm evaluation appear limited. The negative relation between grain yield and soil nitrogen content at the collection site may be caused by the comparative disadvantage that germplasm from regions with favourable growing conditions has under low-yielding conditions.Particular environmental conditions at the collection site were no indicator for the response to changed growing conditions. Relatively high grain yields under good and adverse growing conditions excluded each other in all but two cases. Also, it was difficult to relate grain yield to regions of collection, as the response of individual landraces from a certain region to changing growing conditions differed strongly. Differentiation on the basis of landrace groups appears more promising. The Hauran landrace group provided the largest number of populations with relatively high grain yields over diverse environments.