Cave selection and use by swarming bat species

Caves are an important resource to a large proportion of temperate bat species, primarily as mating and hibernation sites. However, information on bat use exists for only a small fraction of caves in many parts of the temperate world, in part because current survey methods are inappropriate for many species. We surveyed the UK’s largest karst landscape, the Yorkshire Dales, by monitoring autumn swarming (mating) activity at 53 caves using automated echolocation call loggers, followed by trapping. Over 60% of caves surveyed were used by bats, but there was considerable variation in activity. Swarming activity was positively correlated with chamber development and negatively correlated with the amount of water the cave carried: together these two predictors explained 45% of the variance. Entrance orientation and shelter explained a further 10%. Activity was not correlated with entrance size, altitude or connectivity to the nearest summer habitat. All five resident swarming species were caught at most sites: Myotis brandtii, Myotis daubentonii, Myotis mystacinus, Myotis nattereri and Plecotus auritus. Behaviour, species composition and sex and age ratios were typical of swarming reported in other studies. Bat populations and catchment sizes were large and despite the proximity of other suitable caves, bats showed high fidelity to single sites. Our results show that the national importance of these caves has been overlooked. We suggest that survey for swarming activity is a quick and effective method of identifying underground bat sites and is likely to uncover many previously unknown and important sites throughout the temperate world.     

Recovery in soil cover and vegetation structure after ancient landslide in mountain fens under Caltho-Alnetum community and response of soil microarthropods (Hexapoda: Collembola) to natural restoration process

Purpose

The objective of this study was to determine the long-term environmental changes induced by ancient landslide in the mountain fen. Attempts were made to demonstrate the progress of the soil cover restoration process about 200 years after the landslides and associated with changes in vegetation and soil microarthropod biodiversity and occurrence pattern associated with the restoration of soil cover.

Material and methods

The study covered mountain fen of the Caltho-Alnetum in the Babiogórski National Park in Outer Flysch Carpathians, Poland, where ancient landslide deposits are causing disturbance in fen hydrologic regime and over time related to various rate of fen area natural restoration processes. The drill test has been used to assess changes in layering and thickness of the fen soils. The following soil parameters, such as pH and total organic carbon content, were determined at each distinguish layer. The diversity and distribution pattern of soil microarthropods, represented by Collembola, was examined in two parts of the fen: restored and not-restored. The soil parameters, such as pH, electrical conductivity, total exchangeable base, total organic carbon, and nitrogen content, were determined in the soil samples simultaneously. The assessment of the vegetation structure recovery within studied mountain fen after landslide was referred to average parameters of the community completed for other natural mountain fens under the Caltho-Alnetum community. The research results were statistically verified.

Results and discussion

The test drillings showed that landslides change soil layering, site-specific soil properties of mountain fen such as chemistry (the statistically significant differences were noted only in the case of total organic carbon content), vegetation structure, and soil microarthropod communities. By changing site-specific conditions, landslides influence on the biodiversity and peatland ecosystems functioning.

Conclusion

Our results clearly demonstrate that the landslide itself initiated a complex and lengthy process of changes in biological aspects of peatlands including the biodiversity of the underground fauna and plant community. Soil microarthropod communities represented by Collembola can be used as a good indicator of mountain fen restoration process.

     

Re-examining the glomalin-purity of glomalin-related soil protein fractions through immunochemical,lectin-affinity and soil labelling experiments

Due to analytical similarities with the mycorrhizal glycoprotein glomalin, ubiquitous citrate and heat-extractable soil protein fractions have been assumed to be predominantly glomalin-stabilised within soil. Often termed glomalin-related soil protein (GRSP), little however is actually known of the “glomalin-purity” of these soil fractions. We undertook western and lectin blots and crossed immuno/lectin affinity electrophoresis (CIE/CLAE) analysis of “easily extractible” GRSP fractions, as well as liquid chromatography-tandem mass spectrometry (LC–MS/MS) of “total” GRSP fractions. To further test whether soil saprobes contribute to GRSP production, we amended soil with ¹⁴C-sucrose and examined whether ¹⁴C could be traced in the GRSP pool over a 500-day incubation period.While only four of six bands on SDS–PAGE profiles of easily extracted GRSP reacted with anti-glomalin MAb32B11 and the lectin Con A under our blotting conditions, CIE/CLAE indicated the presence of a single protein moiety in the easily extractible GRSP pool. LC–MS/MS analysis of total GRSP pooled from various soils also showed that although traces of protein tentatively assignable to soil bacteria were present in GRSP, their concentrations were low. Additionally, specific activity of total GRSP in ¹⁴C-labelled soil was relatively depleted compared to the bulk soil and soil microbial biomass. This suggests that little GRSP of heterotrophic origin was laid down over the incubation period, although the potential presence of a pre-existing ¹⁴C-free GRSP background, as well as of low microbial dynamics in the absence of any further substrate inputs to the soil warrant caution with this inference.     

Digestibility of proteins and starch (in vitro) of amphidiploids (black gram×mung bean) as affected by domestic processing and cooking

The effects of different domestic processing and cooking methods on starch digestibility (in vitro) and protein digestibility (in vitro) of four strains of amphidiploids (black gram×mung bean) were investigated. An increase of 35 to 48% and 22 to 25% was observed in starch digestibility and protein digestibility, respectively, when the seed of amphidiploids were soaked for 18 h. Cooking (both of unsoaked and soaked seeds) and germination improved significantly the starch digestibility and protein digestibility of all the varieties.     

Acyl-homoserine lactones from Erwinia psidii R. IBSBF 435T, a guava phytopathogen (Psidium guajava L.)

The phytopathogen Erwinia psidii R. IBSBF 435T causes rot in branches, flowers, and fruits of guava (Psidium guajava L.), being responsible for crop losses, and has no effective control. It was demonstrated that this strain produces two compounds [S-(-)-N-hexanoyl and N-heptanoyl-homoserine lactone], both belonging to the class of quorum-sensing signaling substances. A protocol using gas chromatography-flame ionization detection with chiral stationary phase is described for the absolute configuration determination of a natural acyl-homoserine lactone. Biological assays with specific reporter and synthesis of identified substances are also described. This is the first report on the N-heptanoyl-homoserine lactone occurrence in the Erwinia genus.     

Antimicrobial ability and growth promoting effects of feed supplemented with probiotic bacterium isolated from gut microflora of Cirrhinus mrigala

The present studies were conducted to isolate, select, identify and characterize gut bacteria as antimicrobial and growth promoting agent for the feed of economically important fish Cirrhinus mrigala. Intestinal microflora were isolated, counted, and identified, and their in vitro antibacterial properties were determined. The results have revealed that occurrence of Gram-negative rods was around 75% and of Gram-positive rods was 25%. Among the isolates Gram-positive were maintained in nutrient agar slants at 4°C. Of these, eight strains were replica-plated on agar seeded with Aeromonas hydrophila and only one strain CM2(C. mrigala 2) exhibited antibacterial properties in vitro showing inhibition against fish pathogen by well diffusion assay. This isolated strain was identified as Bacillus cereus. This bacterium was mass cultured and incorporated in the pelleted diet(40% protein and 18 k J g–1 gross energy) of C. mrigala to investigate its effect on growth performance, digestibility, nutrient retention and activities of digestive enzymes. The results of feeding trial revealed significantly(P<0.05) high growth performance in terms of specific growth rate, growth percent gain in body weight(BD)(272.4±1.5)%, high apparent protein digestibility((79.9±0.30)%) and low food conversion ratio in the group of fishes fed on diet containing B. cereus in comparison to the fishes fed on diet without probiotics. The carcass composition also revealed high accumulation of proteins((15.28±0.15) g 100 g–1) in fishes fed on diet containing probiotics. Intestinal enzyme activities of protease, amylase and cellulase were also significantly(P<0.05) high in the group of fishes fed on diet supplemented with probiotics indicating the extracellular enzyme production by B. cereus. These results indicate that probiotics stimulate the digestion through the supply of digestive enzyme and certain essential nutrients to animals. Also significantly(P<0.05) low excretion of metabolites, i.e., ammonia excretion and phosphate production(mg kg–1 BW d–1) was observed in the fishes fed with probiotic based diets. Thus, B. cereus appears to be a promising candidate for ptobiotic applications which can enhance growth performance and nutrient retention in C. mrigala.     

Molecular and morphophysiological characterization of superior cluster bean (Cymopsis tetragonoloba) varieties

Cluster bean (Cymopsis tetragonoloba) belongs to tribe Indigoferae of family Leguminosae. India is the world-leader for cluster bean production as it contributes 80% shares of its total production. Cluster bean (guar) is a cash crop for its application in textile, paper, petroleum, mining, pharmaceuticals, explosives, and food industries. Owing to its immense wealth of variable morphophysiological and industrial qualities there is a strong need for appropriate addressing and well documentation of the germplasm. Efforts are to be made to organize research programs on germplasm characterization, utilization, and molecular characterization. Superior cluster bean varieties were selected on the basis of morphophysiological characters and subjected to DNA-based molecular marker analysis. Eighteen of the best genotypes were chosen for DNA extraction, optimization of PCR conditions, and genetic diversity studies using 37 random primers. A total of 381 random amplification fragments were obtained; number of amplifications ranging from 4 to 22 with an average of 10.29 amplified fragments per primer. Evaluation of RAPD data reveals a magnificent range (0.34–0.76) of genotypic similarity coefficients. The UPGMA dendrogram was constructed based on similarity indices which illustrated discrete clustering of different genotypes into groups. Results recorded a positive correlation amongst varieties vis-à-vis cluster analysis generated by NTSYSpc and morphophysiological characteristics. The degree and distribution of genetic diversity in cluster bean would facilitate an evolutionary relationship between numerous accessions that eventually catalogues genetic resources in a more concerted fashion.     

Comparative study of the culturable microbiota present in two different rearing systems,flow‐through system (FTS) and recirculation system (RAS), in a great scallop hatchery

A comparison of the culturable microbiota present in the different compartments of a great scallop (Pecten maximus) hatchery with two experimental production systems, FTS and RAS, throughout a cycle of larval rearing was carried out. All isolates obtained from broodstock gonads, larvae, tank water, biofilm, microalgae, UV‐treated water and biofilter in both systems at three sampling times were characterized by biochemical tests and identified by sequencing of the 16S rRNA gene. Some of the genera were found to be exclusive of broodstock gonads, such as Sinobacterium, Kordia or Microbulbifer, and differences between gonad microbiota before and after spawning were detected. The number of morphotypes obtained in water, larvae and biofilm was similar in both systems, as well as the behaviour of the microbial populations in almost all hatchery compartments, in which Vibrio, Neptuniibacter, Pseudoalteromonas and Shewanella were the most common genera. The diversity obtained was analysed using the principal component analysis (PCA) and Fisher's exact test, showing that the microbial communities present in the common compartments between FTS and RAS did not significantly differ. These results suggest that, at least from a microbiological point of view, the recirculation system could be a good alternative for the production of scallop larvae.     

1H NMR, a rapid method to monitor organic acids during cupuassu (Theobroma grandiflorum Spreng) processing

The development of an analytical method using 1H nuclear magnetic resonance (1H NMR) spectrometry to monitor cupuassu (Theobroma grandiflorum Spreng) bean fermentation, drying, and roasting processes is reported. The analysis of organic acids and alcohols of crude water extracts of cupuassu ground kernels were monitored by HPLC and 1H NMR spectroscopy. The residual protein signals caused deleterious effects on acid and alcohol quantifications. Therefore, the analytical procedures were optimized by sample cleanup and water suppression pulse sequences in order to obtain compatible data using HPLC and 1H NMR. The quantification of lactic acid, acetic acid, and 2,3-butanediol by NMR is 5- to 10-fold faster than by HPLC, with the advantage of providing the identification of several chemical species in a single experiment. Application of these analytical conditions to some cupuassu samples revealed that this methodology can be applied to the quality profiles of fermentation and roasting processes.