Measurement of genetic and environmental variation in barley (Hordeum vulgare) grain hardness

In this study, we assessed a broad range of barley breeding lines and commercial varieties by three hardness methods (two particle size methods and one crush resistance method (SKCS—Single-Kernel Characterization System), grown at multiple sites to see if there was variation in barley hardness and if that variation was genetic or environmentally controlled. We also developed near-infrared reflectance (NIR) calibrations for these three hardness methods to ascertain if NIR technology was suitable for rapid screening of breeding lines or specific populations. In addition, we used this data to identify genetic regions that may be associated with hardness. There were significant (p<0.05) genetic effects for the three hardness methods. There were also environmental effects, possibly linked to the effect of protein on hardness, i.e. increasing protein resulted in harder grain. Heritability values were calculated at >85% for all methods. The NIR calibrations, with R² values of >90%, had Standard Error of Prediction values of 0.90, 72 and 4.0, respectively, for the three hardness methods. These equations were used to predict hardness values of a mapping population which resulted in genetic markers being identified on all chromosomes but chromosomes 2H, 3H, 5H, 6H and 7H had markers with significant LOD scores. The two regions on 5H were on the distal end of both the long and short arms. The region that showed significant LOD score was on the long arm. However, the region on the short arm associated with the hardness (hordoindoline) genes did not have significant LOD scores. The results indicate that barley hardness is influenced by both genotype and environment and that the trait is heritable, which would allow breeders to develop very hard or soft varieties if required. In addition, NIR was shown to be a reliable tool for screening for hardness. While the data set used in this study has a relatively low variation in hardness, the tools developed could be applied to breeding populations that have large variation in barley grain hardness.     

Use of advanced recombinant lines to study the impact and potential of mutations affecting starch synthesis in barley

The effects on barley starch and grain properties of four starch synthesis mutations were studied during the introgression of the mutations from diverse backgrounds into an elite variety. The lys5f (ADPglucose transporter), wax (granule-bound starch synthase), isa1 (debranching enzyme isoamylase 1) and sex6 (starch synthase IIa) mutations were introgressed into NFC Tipple to give mutant and wild-type BC₂F₄ families with different genomic contributions of the donor parent. Comparison of starch and grain properties between the donor parents, the BC₂F₄ families and NFC Tipple allowed the effects of the mutations to be distinguished from genetic background effects. The wax and sex6 mutations had marked effects on starch properties regardless of genetic background. The sex6 mutation conditioned low grain weight and starch content, but the wax mutation did not. The lys5 mutation conditioned low grain weight and starch content, but exceptionally high β-glucan contents. The isa1 mutation promotes synthesis of soluble α-glucan (phytoglycogen). Its introgression into NFC Tipple increased grain weight and total α-glucan content relative to the donor parent, but reduced the ratio of phytoglycogen to starch. This study shows that introgression of mutations into a common, commercial background provides new insights that could not be gained from the donor parent.     

The role of mesoscale tracer transports in the global ocean circulation

Ocean models routinely used in simulations of the Earth's climate do not resolve mesoscale eddies because of the immense computational cost. A new parameterization of the effects of these eddies has been implemented in a widely used model. A comparison of its solution with that of the conventional parameterization shows significant improvements in the global temperature distribution, the poleward and surface heat fluxes, and the locations of deep-water formation.     

When goliaths clash: US and EU differences over the labeling of food products derived from genetically modified organisms

There is a fundamental divergence of opinion between the EU and the US over how food products derived from genetically modified organisms should be labeled. This has less to do with safety, as moves towards the international harmonization of safety standards continue apace, and rather more to do with the consumers' right to know about the origins of the food they are consuming. This paper uses a framework drawn from the global public goods (GPG) literature of economics and the work by international relations theorists on formal international organizations (FIO) to explain why there is presently no global consensus on the manner (voluntary or mandatory) in which GM food products should be labeled.     

Patterns in seabird distribution west of Scotland

The distribution of seabirds west of Scotland was studied relative to water masses in August 1988. Surface salinity was used to indicate the ship's position relative to the water masses described in the literature. Comparisons were made between seabird densities in Inshore Water, the Northern Coastal Current, the Southern Coastal Current and Atlantic/Hebridean Water. Seabird density varied with water mass; some species distributions suggested strong habitat associations. Water masses represent marine habitats, with different physical regimes supporting different marine life; patterns in bird distribution are likely to reflect prey distribution and availability. Manx shearwaters Puffinus puffinus, razorbills Alca torda, guillemots Uria aalge, and kittiwakes Rissa tridactyla were found mostly in Inshore Water, with lower densities in the Northern and Southern Coastal Current water. Only trace numbers of these species occurred in Atlantic/Hebridean Water. Storm petrels Hydrobates pelagicus, fulmars Fulmarus glacialis and puffins Fratercula arctica were found in very low densities in Inshore Water, and were dispersed in higher densities throughout the more oceanic areas. These data suggest that in late summer the Inshore Water of southwestern Scotland has the highest densities of seabirds potentially vulnerable in the event of an oil incident.     

Complementary use of natural and artificial wetlands by waterbirds wintering in Doñana,south‐west Spain

• 1. The Doñana wetland complex (SW Spain) holds more wintering waterfowl than any other wetland in Europe.
• 2. This study focused on the use made by 12 common waterbirds (eight ducks and four waders) of the natural seasonal marshes in Doñana National Park (DNP) and the adjacent Veta la Palma (VLP) fish ponds created in the early 1990s. Data used were from aerial and terrestrial surveys collected between October and February during six consecutive winters from 1998/99 to 2003/04. Changes in distribution of each bird taxon were related to changes in the extent of flooded marshes within DNP. Up to 295 000 ducks were counted in VLP during dry periods, and up to 770 000 in DNP when it was flooded.
• 3. The timing and extent of flooding in DNP was highly variable, but there was a consistent pattern in which ducks concentrated in VLP during dry months and winters but redistributed to DNP as more of it was flooded. This refuge effect was also strong for black‐tailed godwits Limosa limosa, but much less so for other waders. Waders feed mainly on invertebrates, and invertebrate biomass in VLP was found to be higher than in DNP. Ducks feed mainly on seeds and plant material, which are more abundant in DNP when flooded.
• 4. When water levels in DNP were stable over the course of a winter, or controlled for in multivariate models, the numbers of ducks at VLP declined over time, probably due to reduced availability of plant foods. In contrast, numbers of waders at VLP were more stable, and their invertebrate prey became more abundant over time, at least in the winter 2003/4.
• 5. In this extremely important wetland complex, the value of natural and artificial wetlands for wintering waterbirds are complementary, providing suitable habitat for different species and for different conditions in a highly variable Mediterranean environment.

Copyright © 2009 John Wiley & Sons, Ltd.     

The understudied and underappreciated role of predation in the mortality of fish released from fishing gears

The assumption that animals released from fishing gears survive has frequently been scrutinized by researchers in recent years. Mortality estimates from these research efforts can be incorporated into management models to ensure the sustainability of fisheries and the conservation of threatened species. Post‐release mortality estimates are typically made by holding the catch in a tank, pen or cage for short‐term monitoring (e.g. 48 h). These estimates may be inaccurate in some cases because they fail to integrate the challenges of the wild environment. Most obvious among these challenges is predator evasion. Stress and injury from a capture experience can temporarily impair physiological capacity and alter behaviour in released animals, a period during which predation risk is likely elevated. In large‐scale commercial fisheries, predators have adapted their behaviour to capitalize on impaired fishes being discarded, while in recreational catch‐and‐release fisheries, exercise and air exposure can similarly impede the capacity for released fish to evade opportunistic predators. Owing to the indirect and often cryptic nature of this source of mortality, very few studies have attempted to document it. A survey of the literature demonstrated that <2% of the papers in the combined realms of bycatch and catch‐and‐release have directly addressed or considered post‐release predation. Future research should combine field telemetry and laboratory studies using both natural and simulated predation encounters and incorporate physiological and behavioural endpoints. Quite simply, predation is an understudied and underappreciated contributor to the mortality of animals released from fishing gears.     

PIT标记技术在幼鲵标记中的应用研究

对347尾预放流幼鲵的尾部皮下层和肌肉层分别进行横向和纵向PIT标记,通过对标记幼鲵6个月的跟踪观察,共收集到脱落芯片94枚,总脱落率高达27.1%,严重影响标记目的。对植入芯片时的记录进行对比分析,得出尾部皮下层纵向植入法对幼鲵肌体伤害最小,脱落率最低,为3.0%,笔者认为该方法是PIT标记幼鲵的最佳方法。     

Movement patterns of Brook Trout in a restored coastal stream system in southern Massachusetts

Coastal Brook Trout (Salvelinus fontinalis) populations are found from northern Canada to New England. The extent of anadromy generally decreases with latitude, but the ecology and movements of more southern populations are poorly understood. We conducted a 33‐month acoustic telemetry study of Brook Trout in Red Brook, MA, and adjacent Buttermilk Bay (marine system) using 16 fixed acoustic receivers and surgically implanting acoustic transmitters in 84 individuals. Tagged Brook Trout used the stream, estuary (50% of individuals) and bay (10% of individuals). Movements into full sea water were brief when occurring. GAMM models revealed that transitions between habitat areas occurred most often in spring and fall. Environmental data suggest that use of the saline environment is limited by summer temperatures in the bay. Movements may also be related to moon phase. Compared to more northern coastal populations of Brook Trout, the Red Brook population appears to be less anadromous overall, yet the estuarine segment of the system may have considerable ecological importance as a food resource.     

Angling for endangered fish: conservation problem or conservation action?

Recreational angling has been implicated in population declines of some marine and freshwater fish, but this activity is rarely considered as a threat or even halted when endangered species are targeted. Indeed, in some cases, anglers are drawn to fish for rare or endangered species. Conservation‐oriented behaviours such as catch‐and‐release are often practiced voluntarily due to the ethics of anglers, yet even in these cases, some fishing mortality occurs. Nonetheless, there are many indirect conservation benefits associated with recreational angling. Here, we present a series of case‐studies and consider whether catch‐and‐release angling for endangered fish is a conservation problem or a conservation action. If recreational angling activities contribute to population‐level consequences that are contrary to recovery strategies, then angling for endangered species would seem to be a poor option. However, as revealed by several case‐studies, there is much evidence that anglers are vocal and effective proponents of fish and habitat conservation, and for endangered species, they are often the only voice when other stakeholders are not engaged. Anglers may contribute directly to conservation actions via user fees (e.g. licences), philanthropic donations or by volunteering in research, education and restoration activities. However, it is important to quantify post‐release mortality as well as understand the full suite of factors influencing a given population or species to know the potential risks. A risk assessment approach outlined in the paper may be used by managers to determine when the benefits of angling for endangered species outweigh the risks.