Detection of cows with insemination problems using selected classification models

In the present study, the detection of cows with artificial insemination (AI) difficulties using selected statistical and machine learning methods is presented. Cows were divided into two classes: those that conceived after one or two services (“GOOD”) and those that required more than two services per conception (“POOR”). The best performance was exhibited by one of the artificial neural networks (ANN) and the multivariate adaptive regression spline (MARS) method (AIC, BIC, RMS and accuracy); whereas logistic regression (LR) and classification functions (CF) were of somewhat lower quality. The detection of cows with AI difficulties, performed on the basis of the test set comprising new instances, showed that the ANN and MARS were more precise in comparison with the statistical methods. Sensitivity and specificity were over 85% for the perceptron with two hidden layers (MLP2) and MARS and approximately 80% or lower for LR and CF. From among variables determining the AI category, the average calving interval and cow body condition index were the most important. Other significant variables were lactation number, pregnancy length, sex of calf from previous calving and cow age. The prognoses obtained using ANN and MARS can be used for the appropriate preparation of cows for AI.     

Investigations of barley stripe mosaic virus as a gene silencing vector in barley roots and in <Emphasis Type="Italic">Brachypodium distachyon</Emphasis> and oat

Background  

Gene silencing vectors based on Barley stripe mosaic virus (BSMV) are used extensively in cereals to study gene function, but nearly all studies have been limited to genes expressed in leaves of barley and wheat. However since many important aspects of plant biology are based on root-expressed genes we wanted to explore the potential of BSMV for silencing genes in root tissues. Furthermore, the newly completed genome sequence of the emerging cereal model species Brachypodium distachyon as well as the increasing amount of EST sequence information available for oat (Avena species) have created a need for tools to study gene function in these species.     

Numerical and behavioral responses of waterfowl to the invasive American mink: A conservation paradox

A behavioral response is usually the first adaptation of animals to environmental changes such as the introduction of an alien invasive species, and it seems to be the most important factor in reducing the negative impact of new predators on naive prey. This study examined changes in the abundance and behavior of breeding coots (Fulica atra) and great crested grebes (Podiceps cristatus) in response to invasion of the Mazurian Lakeland (NE Poland) by American mink (Neovison vison), first recorded here in 1984. Feral mink densities varied from 1.0 to 14.6 individuals per 10 km of shoreline. Mink were responsible for the losses of 17–58% of experimental clutches (artificial nests containing chicken eggs) that were deployed. Mink destroyed more experimental clutches than other predators; the effects of mink predation were similar in reeds and on the bank. Radio-tracking showed that mink avoided lake banks near human settlements. Mink have markedly affected the breeding distribution of both species and caused a greater than 20-fold decline in coot numbers. For coots and grebes breeding distribution and nesting success were positively associated with built-up areas along lake shores and also with whether the birds were breeding in colonies. Increased brood survival of coots and grebes near human settlements is a paradox in the sense that a man-made habitat change has provided refuge from an alien predator.     

Methodological aspects of determining soil particle‐size distribution using the laser diffraction method

This paper presents the influence of selected methodological aspects on the results of particle‐size distribution (PSD) as measured by the laser diffraction method (LDM). The investigations were carried out using the Mastersizer 2000 with Hydro MU attachment (Malvern Ltd., UK). It was found that for the investigated soils: (1) optimal speed of pump and stirrer was 2500 rpm, (2) optimal measurement time was ≈ 1 min, (3) there are two, practically equivalent methods for soil‐sample dispersion: chemical (with the use of a solution of sodium hexametaphosphate) or physical (by means of ultrasound application for 4 min at a maximum power of 35W), (4) one must not use the chemical and physical dispersing methods simultaneously, because this can lead to aggregation (not dispersion) of soil particles, (5) the Fraunhofer theory (physical models) can be used to convert scattered‐light data to PSD. In the case of the Mie theory, the best results were obtained for a refractive index (RI) in the range of 1.5–1.6 and an absorption index (AI) of 1.0. It was also found that most of the discussed parameters depend on design of the measuring device and on the type and volume of the investigated suspensions. It is necessary, therefore, to explain how the data was obtained every time and to specify the details in the methodological part of the paper.     

Pharmacokinetic profiles of meloxicam after single IV and PO administration in Bilgorajska geese

The purpose of this study was two-fold: I) to determine the pharmacokinetic profile of meloxicam (MLX) in geese after intravenous (IV) and oral (PO) administration and II) to assess tissue residues in muscle, heart, liver, lung, and kidney. Ten clinically normal female Bilgorajska geese were divided into two groups (treated, n = 8; control, n = 2). Group 1 underwent a 3-phase parallel study with a 1-week washout period. In phase I, animals received MLX (0.5 mg/kg) by IV administration; the blood was collected up to 48 hr. In phases II and III geese were treated orally at the same dosage for the collection of blood and tissue samples, respectively. Group 2 served as control. After the extraction procedure, a validated HPLC method with UV detection was used for plasma and organ analysis. The plasma concentrations were quantifiable up to 24 hr after both the administrations. The elimination phase of MLX from plasma was similar in both the administration groups. The clearance was slow (0.00975 L/hr*Kg), the volume of distribution small (0.0487 L/kg), and the IV half-life was 5.06 ± 2.32 hr. The average absolute PO bioavailability was 64.2 ± 24.0%. Residues of MLX were lower than the LOQ (0.1 µg/kg) in any tested tissue and at any collection time. The dosage used in this study achieved the plasma concentration, which provides analgesia in Hispaniolan Amazon parrots for 5 out of 24 hr after PO administration. MLX tissue concentrations were below the LOD of the assay in tissue (0.03 µg/ml). A more sensitive technique might be necessary to determine likely residue concentrations in tissue.     

Fatty acid,amino acid,and trace mineral analyses of five weaning foods from Jos,Nigeria

Five plant-based weaning foods (WF) (Dietrend, Jot-M, Soy, Ang and Vic-T) locallyprepared in Jos, Nigeria were analyzed by gas-liquid chromatography,reverse-phase high performance liquid chromatography, and atomicemission spectrometry with inductively coupled plasma to determine theirfatty acid (FA), amino acid, and trace mineral contents, respectively.Results of these direct analyses were compared to expected values derivedfrom food composition tables prepared by the United States Department of Agriculture (USDA). Additionally, results were compared against recommendednutrient values, using breast milk as the standard for FA content andrecommended dietary allowances (RDA) for amino acid and mineral contents.The overall nutritional value of the five WF varied considerably and thequantities of particular nutrients determined by direct analysis differedmarkedly from those estimated using USDA food tables. Comparison of WFfatty acid composition relative to the RDA recommendations and a humanmilk standard revealed a much higher proportion of both linoleic (35–55wt%) and -linolenic acids (1%–7 wt%) relative to human milklipids (11%–12% and 0.8%–0.9% wt, respectively); however, the WFwere devoid of arachidonic acid and docosahexaenoic acid. Soy containedthe highest amounts of linoleic acid (59.7 mg/g) and -linolenicacid (7.46 mg/g) compared to the other four WF (10.2–41.0 and 0.35–3.18 mg/g, respectively). The linoleic acid/-linolenic acid ratio was within the recommended range (5:1 to 10:1) in only Jot-M (10:1)and Soy (8:1). Dietrend, Vic-T and Ang, containedlinoleic/-linolenic ratios of 12:1, 29:1, and 82:1, respectively.The Soy weaning food would provide the most protein (24.3 g/day), basedon an estimated daily intake of 65 g of weaning food by a normalsix-month-old infant, compared to Jot-M (11.9 g/day), Dietrend (11.7g/day), Ang (8.07 g/day) and Vic-T (7.26 g/day). The protein RDA forchildren up to 1 year of age is 13–14 g/day. Comparison of the mineralcontents of the WF to the RDAs for various minerals indicated that all fivewould provide suboptimal amounts of calcium (16 to 250 mg/day) andzinc (1.42 to 3.56 mg/day) compared to respective RDAs of400 mg/day and 5 mg/day.These data show that the Soy weaning food is an excellent source of linoleicacid and -linolenic acid, as well as being a good source of highquality protein. Jot-M and Dietrend provide useful amounts of the essentialFA; however, it is advisable to reevaluate the composition of Ang andVic-T to find ways to improve the linoleic/-linolenic ratio of eachand increase their total protein content. These results document theshortcomings of using published food composition tables based on foods inAmerica when devising weaning foods based on ingredients in another partof the world.     

Rich deciduous forests in Bia owie a as a dynamic mosaic of developmental phases: premises for nature conservation and restoration management

The Bia owie a Primeval Forest, Poland, is the only forest area in temperate Europe where large tracts of natural forest communities have been conserved. The concept of silvatic mosaic [Oldeman, R.A.A., 1990. Forests: Elements of Silvology. Springer, Berlin] was applied in order to characterise the structure of stands representing oak–lime–hornbeam forest in both, the restricted area of Bia owie a National Park (BNP) and the commercial forests (CF), as well as to indicate a holistic approach towards protection and restoration of natural areas.Six developmental phases of stands were distinguished and defined: regeneration, young, pole, late pole, optimal, and terminal. Compositional and structural differences between the first five phases were also evaluated and visualised. Moreover, the considerable differences between analogous phases in BNP and CF were found. The uniform stand patches were mapped into two plots in BNP (25 ha each) and two in CF (25 and 20 ha), with a resolution of 10 m× 10 m pixels.The mosaic composition of natural communities indicates close-to-the equilibrium stage: the biostatic optimal phase occupies 33–40% of the area, while aggradational younger phases share nearly the same portion of the area as the senescent phase does. Although small, 0.01–0.04 ha eco-units dominate in BNP, there is a considerable portion of intermediate and large patches, indicating a complex character of factors responsible for the mosaic structure of natural stands in BNP. Both, composition and texture analyses indicate that the area of 25 ha is close to the minimum structure area specific for the communities studied.The comparison of natural and managed stands revealed large deficits of the optimal phase (only 19%) and a total absence of the terminal one in the managed area (20–35% in natural forest). Also the mosaic texture of CF plots was simplified because of standardisation of the management unit size. The modification of developmental phases, mosaic composition, and structure must lead to changes in the dynamics of the entire community. The present study demonstrates that the natural forest should be considered as a dynamic supersystem, covering a sufficient area to allow the developmental phases to perform in correct proportions. Because of differences in the durability of various phases, the natural cycle of forest development has an asynchronous and highly unpredictable character. Indeed, the applicability of multipurpose forestry rules as a tool of nature conservation has been questioned. An absolute ban on cutting in the remaining old-growth stands should be a basic rule for the restoration management.     

增施氮肥和地面管理对酸樱桃园土壤营养状况的影响

在一个连续进行了 ８年Ｎ肥定位试验的酸樱桃园,调查了每年施用 Ｎ６０ ｋｇ· ｈｍ~(－２)和行间生草制对土壤营养状况的影响。结果表明：在肥沃土壤里ＮＨ_４~＋是速效Ｎ的主要存在形式,而ＮＯ_３~－的含量很低。生草地土壤中含有较多的 ＮＨ_４~－,而清耕带土壤中含有较多的 ＮＯ_３~－。施肥增加土壤速效 Ｎ的含量。土壤 ＮＯ_３~－的季节性变化表明 ５至 ６月份土壤中 ＮＯ_３~－的含量高,而花前和 ７月份土壤中 ＮＯ_３~－含量低。 Ｐ、Ｋ在清耕带 １０ ｃｍ以下土壤的含量低于生草地土壤,但在 ０～ １０ｃｍ土层中Ｋ的含量高于生草地。Ｐ的含量不受影响。施Ｎ减少了土壤Ｐ、Ｋ的含量。土壤中Ｍｇ的含量分布均匀,不受施Ｎ和地面管理制度的影响。     

Evaluation of the ability of colistin,amoxicillin (components of Potencil®), and fluoroquinolones to attenuate bacterial endotoxin‐ and Shiga exotoxin‐mediated cytotoxicity—In vitro studies

Escherichia coli is one of the major pathogens in humans and animals causing localized and systemic infections, which often lead to acute inflammation, watery diarrhea, and hemorrhagic colitis. Bacterial lipopolysaccharide (LPS) and Shiga exotoxins (Stx) are mostly responsible for such clinical signs. Therefore, highly effective treatment of E. coli infections should include both eradication of bacteria and neutralization of their toxins. Here, for the first time, we compared the in vitro ability of common antibiotics to decrease LPS‐ and Stx‐mediated cytotoxicity: colistin, amoxicillin (used separately or combined), enrofloxacin, and its metabolite ciprofloxacin. Three experimental scenarios were realized as follows: (a) the direct effect of antibiotics on endotoxin, (b) the effect of antibiotic treatment on LPS‐mediated cytotoxicity in an experiment mimicking “natural infection,” (c) the effect of antibiotics to decrease Stx2e‐mediated cytotoxicity. Two cell lines, A549 and Vero cells, were used to perform cytotoxic assays with the methyl tetrazolium (MTT) and lactate dehydrogenase leakage (LDH) methods, respectively. Colistin and amoxicillin, especially used in combination, were able to attenuate LPS toxic effect, which was reflected by increase in A549 cell viability. In comparison with other antibiotics, the combination of colistin and amoxicillin exhibited the highest boster or additive effect in protecting cells against LPS‐ and Stx2e‐induced toxicity. In summary, in comparison with fluoroquinolones, the combination of colistin and amoxicillin at concentrations similar to those achieved in plasma of treated animals exhibited the highest ability to attenuate LPS‐ and Stx2e‐mediated cytotoxicity.     

Effect of the diets with pumpkin silage and synthetic β‐carotene on the carotenoid,immunoglobulin and bioactive protein content and fatty acid composition of colostrum

Forty Simmental cows were divided into four groups with 10 per group to investigate the effect of a transition diet supplemented with synthetic β‐carotene and natural carotenoid‐rich feed (pumpkin silage) on chemical composition of the colostrum. The control group (I) was fed grass and maize silage and supplemental concentrates, group II additionally received 400 mg/day/cow of synthetic β‐carotene, in group, III 40% DM of maize silage was replaced with pumpkin silage to increase β‐carotene intake by 400 mg in relation to group I, and in group IV 60% DM of maize silage was replaced with pumpkin silage without adjusting for β‐carotene. Colostrum was collected from the cows within 5 hr of calving to determine colostrum composition, the content of immunoglobulins and carotenoids, total antioxidant status (TAS), the content of some bioactive proteins and the composition of fatty acids. The study showed that the experimental diets had no effect on the gross composition of colostrum. The content of α‐carotene, β‐carotene and violaxanthin was significantly higher in group IV than in group I and that of lutein higher in group IV than in groups I and II. Total antioxidant status of colostrum in group IV was significantly higher than in group I. Groups III and IV were characterized by a higher concentration of immunoglobulin IgG in relation to group I. IgM level in groups II, III and IV was significantly higher than in group I and that in groups III and IV was also higher than in group II. The highest IgA concentration was observed in group IV and the lowest in group I. Lysozyme concentration was higher in group IV compared to groups I and II. The diets had no effect on the total content of SFA, MUFA and PUFA in colostrum.