Paleo-Eskimo mtDNA genome reveals matrilineal discontinuity in Greenland

The Paleo-Eskimo Saqqaq and Independence I cultures, documented from archaeological remains in Northern Canada and Greenland, represent the earliest human expansion into the New World's northern extremes. However, their origin and genetic relationship to later cultures are unknown. We sequenced a mitochondrial genome from a Paleo-Eskimo human by using 3400-to 4500-year-old frozen hair excavated from an early Greenlandic Saqqaq settlement. The sample is distinct from modern Native Americans and Neo-Eskimos, falling within haplogroup D2a1, a group previously observed among modern Aleuts and Siberian Sireniki Yuit. This result suggests that the earliest migrants into the New World's northern extremes derived from populations in the Bering Sea area and were not directly related to Native Americans or the later Neo-Eskimos that replaced them.     

Culling prey promotes predator recovery--alternative states in a whole-lake experiment

Many top-predator fish stocks in both freshwater and marine systems have collapsed as a result of overharvesting. Consequently, some of these communities have shifted into seemingly irreversible new states. We showed, for predators feeding on prey that exhibit food-dependent growth, that culling of fish prey may promote predator recovery. We removed old stunted individuals of a prey-fish species in a large, low-productive lake, which caused an increase in the availability of small-sized prey and allowed the predator to recover. The shift in community state has been sustained for more than 15 years after the cull ended and represents an experimental demonstration of an alternative stable state in a large-scale field system. Because most animals exhibit food-dependent growth, shifts into alternative stable states resulting from overcompensating prey growth may be common in nature and may require counterintuitive management strategies.     

Functional links between Aβ toxicity, endocytic trafficking, and Alzheimer's disease risk factors in yeast

Aβ (beta-amyloid peptide) is an important contributor to Alzheimer's disease (AD). We modeled Aβ toxicity in yeast by directing the peptide to the secretory pathway. A genome-wide screen for toxicity modifiers identified the yeast homolog of phosphatidylinositol binding clathrin assembly protein (PICALM) and other endocytic factors connected to AD whose relationship to Aβ was previously unknown. The factors identified in yeast modified Aβ toxicity in glutamatergic neurons of Caenorhabditis elegans and in primary rat cortical neurons. In yeast, Aβ impaired the endocytic trafficking of a plasma membrane receptor, which was ameliorated by endocytic pathway factors identified in the yeast screen. Thus, links between Aβ, endocytosis, and human AD risk factors can be ascertained with yeast as a model system.     

Barium isotopes in allende meteorite: evidence against an extinct superheavy element

Carbon and chromite fractions from the Allende meteorite that contain isotopically anomalous xenon-131 to xenon-136 (carbonaceous chondrite fission or CCF xenon) at up to 5 x 10(11) atoms per gram show no detectable isotopic anomalies in barium-130 to barium-138. This rules out the possibility that the CCF xenon was formed by in situ fission of an extinct superheavy element. Apparently the CCF xenon and its carbonaceous carrier are relics from stellar nucleosynthesis.     

Uncertainties in static closed chamber measurements of the carbon isotopic ratio of soil-respired CO2

The δ¹³C of soil-respired CO₂ (δ_r) is frequently determined using static closed chamber methods. δ_r is obtained as the intercept of the least squares linear regression of δ vs 1/C*, where measured δ¹³C-CO₂ (δ) and volume fraction of CO₂ (C*) values of chamber headspace samples are used. Theoretically, we show that the variance of the estimate of δ_r can be reduced by extending the 1/C* interval of the regression towards (i) higher or (ii) lower values, or (iii) distributing the 1/C* values optimally within the pre-selected headspace CO₂ sampling time period. Experimental applications of these approaches indicated that: (1) lowering the initial CO₂ level, thereby increasing 1/C*, yielded a positive bias to the δ_r result. (2) It was feasible to obtain lower variance in the δ_r estimate by lowering 1/C* values through extended CO₂ sampling time. We also recommend that each chamber is sampled only once, mainly because this allows freedom to select the sampling times, in order to optimize the distribution of 1/C* values.     

Aluminium speciation: Variations caused by the choice of analytical method and by sample storage

We have compared a new FIA method (M1) for aluminium speciation in natural waters and a manual one based on one of Driscoll's proposals (M2). In synthetic solutions, aluminium's fluoro complexes were measured as ‘labile monomeric AP (Al _i ) by M2, but not as ‘quickly reacting Al’ (Al _qr ) by M1. Aluminium's complexes with Nordic Reference Humic Acid were measured neither as Al _i nor as Al _qr , and the same result was obtained for Al's citrato complexes. After excluding aluminium's fluoro complexes from Al _i , the results of the two methods agreed well for soil leaching samples and fairly well for natural water samples. Detection limits: 10μg L^?1 (ca. 0.4 μM) for both methods. Sample throughputs: M1∶66 injections h^?1; M2∶5 samples h^?1. Repeatabilities (RSD) on natural water samples: M1∶0.6–5.8% and M2 0.7–4.6%. Sample storage studies on soil solutions (FIA method) indicated that storage effects were ‘sample type specific’. A sample with a low level of Al _qr and a high DOC level (P2A) was more sensitive to storage than one with a high [Al] _qr and a low [DOC] (P2B^*). The decrease in [Al] _qr was statistically significant after 10 h (P2A) and 24 h (P2B^*), respectively. After 3 days' storage, [Al] _qr had decreased by some 40% in P2A, while the decrease in P2B^* was less than 10% after 8 days. The results of this part of the study also emphasize the importance of careful method standardization in sample storage studies.     

Soil acidification by atmospheric pollution and forest growth

In recent years concern has been expressed about the danger of harmful pollution deposits which affect areas at great distances from the emission sources. The investigation was so designed that a possible reaction in growth resulting from a supposed acidification could be observed as far as possible. A poorer growth development was observed in regions, which are suspected of being more susceptible to acidification than those regions which are presumed to be less susceptible in this respect. We have found no good reason for attributing the reduction in growth to any cause other than acidification.     

Chemical stabilization of soil organic nitrogen by phenolic lignin residues in anaerobic agroecosystems

This review summarizes independent reports of yield decreases in several agricultural systems that are associated with repeated cropping under wet or submerged soil conditions. Crop and soil data from most of these agroecosystems have led researchers to attribute yield decreases to a reduction in crop uptake of N mineralized from soil organic matter (SOM). These trends are most evident in several long-term field experiments on continuous lowland rice systems in the Philippines, but similar trends are evident in a continuous rice rotation in Arkansas, USA and with no-till cropping systems in North American regions with cool, wet climatic conditions in Spring. Soil analyses from some of these systems have found an accumulation of phenolic lignin compounds in SOM. Phenolic compounds covalently bind nitrogenous compounds into recalcitrant forms in laboratory conditions and occurrence of this chemical immobilization under field conditions would be consistent with field observations of reduced soil N supply. However, technological shortcomings have precluded its demonstration for naturally formed SOM. Through recent advances in nuclear magnetic resonance spectroscopy, agronomically significant quantities of lignin-bound N were found in a triple-cropped rice soil in the Philippines. A major research challenge is to demonstrate in the anaerobic agroecosystems that these lignin residues bind sufficient quantities of soil N to cause the observed yield decreases. A key objective will be to elucidate the cycling dynamics of lignin-bound N relative to the seasonal pattern of crop N demand. Anaerobic decomposition of crop residues may be the key feature of anaerobic cropping systems that promotes the accumulation of phenolic lignin residues and hence the covalent binding of soil N. Potential mitigation options include improved timing of applied N fertilizer, which has already been shown to reverse yield decreases in tropical rice, and aerobic decomposition of crop residues, which can be accomplished through field drainage or timing of tillage operations. Future research will evaluate whether aerobic decomposition promotes the formation of phenol-depleted SOM and greater in-season N mineralization, even when the soil is otherwise maintained under flooded conditions during the growing season.