QTL identification of yield-related traits and their association with flowering and maturity in soybean

Two soybean recombinant inbred line populations, Jinpumkong 2 × SS2-2 (J × S) and Iksannamulkong × SS2-2 (I x S) showed population-specific quantitative trait loci (QTLs) for days to flowering (DF) and days to maturity (DM) and these were closely correlated within population. In the present study, we identified QTLs for six yield-related traits with simple sequence repeat markers, and biological correlations between flowering traits and yield-related traits. The yield-related traits included plant height (PH), node numbers of main stem (NNMS), pod numbers per plant (PNPP), seed numbers per pod (SNPP), 100-seed weight (SW), and seed yield per plant (SYPP). Eighteen QTLs for six yield-related traits were detected on nine chromosomes (Chrs), containing four QTLs for PH, two for NNMS, two for PNPP, three for SNPP, five for SW, and two for SYPP. Two highly significant QTLs for PH and NNMS were identified on Chr 6 (LG C2) in both populations where the major flowering gene, E1, and two DF and DM QTLs were located. One other PNPP QTL was also located on this region, explaining 12.9% of phenotypic variation. Other QTLs for yield-related traits showed population-specificity. Two significant SYPP QTLs potentially related with QTLs for SNPP and PNPP were found on the same loci of Chrs 8 (Satt390) and 10 (Sat_108). Also, highly significant positive phenotypic correlations (P < 0.01) were found between DF with PH, NNMS, PNPP, and SYPP in both populations, while flowering was negatively correlated with SNPP and SW in the J × S (P < 0.05) and I × S (P < 0.01) populations. Similar results were also shown between DM and yield-related traits, except for one SW. These QTLs identified may be useful for marker-assisted selection by soybean breeders.     

Estimation of genetic components of variation for salt tolerance in chickpea using the generation mean analysis

Chickpea (Cicer arietinum L.) is known to be salt-sensitive and in many regions of the world its yields are restricted by salinity. Recent identification of large variation in chickpea yield under salinity, if genetically controlled, offers an opportunity to develop cultivars with improved salt tolerance. Two chickpea land races, ICC 6263 (salt sensitive) and ICC 1431 (salt tolerant), were inter-crossed to study gene action involved in different agronomic traits under saline and control conditions. The generation mean analysis in six populations, viz. P₁, P₂, F₁, F₂, BC₁P₁ and BC₁P₂, revealed significant gene interactions for days to flowering, days to maturity, and stem Na and K concentrations in control and saline treatments, as well as for 100-seed weight under salinity. Seed yield, pods per plant, seeds per plant, and stem Cl concentration were controlled by additive effects under saline conditions. Broad-sense heritability values (>0.5) for most traits were generally higher in saline than in control conditions, whereas the narrow-sense heritability values for yield traits, and stem Na and K concentrations, were lower in saline than control conditions. The influence of the sensitive parent was higher on the expression of different traits; the additive and dominant genes acted in opposite directions which led to lower heritability estimates in early generations. These results indicate that selection for yield under salinity would be more effective in later filial generations after gene fixation.     

Rubber tree early selection for yield stability in time and among locations

Rubber production in the rubber tree [Hevea brasiliensis (Willd. ex Adr. de Juss.) Muell. Arg.] can be expressed differently in different environments. Thus the objective of the present study was to select productive progenies, stable and responsive in time and among locations. Thirty progenies were assessed by early yield tests at three ages and in three locations. A randomized block design was used with three replications and ten plants per plot, in 3 × 3 m spacing. The procedure of the mixed linear Reml/Blup model—restricted maximum likelihood/best non-biased linear prediction was used in the genetic statistical analyses. In all the individual analyses, the values observed for the progeny average heritability ( $ \hat{h}_{pa}^{2} $ ) were greater than those of the additive effect based on single individuals ( $ \hat{h}_{a}^{2} $ ) and within plot additive ( $ \hat{h}_{ad}^{2} $ ). In the joint analyses in time, there was genotype × test interaction in the three locations. When 20 % of the best progenies were selected the predicted genetic gains were: Colina G_G = 24.63 %, Selvíria G_G = 13.63 %, and Votuporanga G_G = 25.39 %. Two progenies were among the best in the analyses in the time and between locations. In the joint analysis among locations there was only genotype × location interaction in the first early test. In this test, selecting 20 %, the general predicted genetic gain was G_G = 25.10 %. Identifying progenies with high and stable yield over time and among locations contributes to the efficiency of the genetic breeding program. The relative performance of the progenies varies depending of the age of early selection test.     

Hybrids of <Emphasis Type="Italic">Passiflora</Emphasis>: <Emphasis Type="Italic">P. gardneri</Emphasis> versus <Emphasis Type="Italic">P. gibertii,</Emphasis> confirmation of paternity,morphological and cytogenetic characterization

Two new varieties of interspecific hybrids of Passiflora have been developed from the cross between P. gardneri versus P. gibertii, both registered under the Passiflora Society International. Twelve putative hybrids were analyzed. Hybridization was confirmed using RAPD and SSR markers. Primer UBC11 (5′-CCGGCCTTAC-3′) generated informative bands. Primer SSR Pe75 has amplified species-specific fragments and a heterozygote status was observed with two parent bands 300 and 350 bp. The molecular markers generated have been analyzed for the presence or absence of specific informative bands. Based on the morphological characterization, we have identified two hybrid varieties: P. ‘Gabriela’ and P. ‘Bella’. P. ‘Gabriela’ produced flowers in bluish tones, bluish petals on the adaxial and abaxial faces, light blue sepals on the adaxial and light green on the abaxial faces, corona with the base of filaments in intense lilac color and white apex. P. ‘Bella’ produced flowers in lilac tones, intense lilac petals on the adaxial and abaxial faces, dark lilac sepals with whitish edges on the adaxial and light green on the abaxial faces, corona with the base of filaments in intense lilac color and white apex. The cytogenetic analysis verified that the hybrids have the same chromosomal number as the parents (2n = 18); the formation of bivalents between the homeologous chromosomes (n = 9) was observad, leading to regular meiosis, which allows the sexual reproduction and use of these hybrids in breeding programs.     

Breeding value of selected blackcurrant (<Emphasis Type="Italic">Ribes nigrum</Emphasis> L.) genotypes for early-age fruit yield and its quality

The study was conducted in the years from 2011 to 2013 at the Research Institute of Horticulture in Skierniewice, Poland. The aim of the research was to assess the breeding value, based on the effects of general and specific combining abilities (GCA and SCA), of 15 parental genotypes of blackcurrant in terms of fruit yield and quality. The plant material consisted of F₁ generation seedlings obtained by crossing, in a factorial mating design of twelve maternal (‘Bona’, ‘Big Ben’, ‘Chereshnieva’, Kupoliniai’, ‘Gofert’, ‘Tines’, ‘Sofievskaia’, ‘Tihope’, ‘Ores’, ‘Ruben’, ‘Titania’ and D13B/11) and three paternal cultivars (‘Ceres’, ‘Foxendown’ and ‘Saniuta’). It was found that the cultivars ‘Ruben’, ‘Big Ben’, ‘Gofert’ and D13B/11 had significant positive effects of GCA on fruit yield at least in two consecutive years. ‘Ruben’, ‘Saniuta’ and D13B/11 had positive GCA effects on fruit weight. For ‘Chereshnieva’, ‘Gofert’, ‘Tines’, ‘Sofievskaia’, ‘Tihope’, ‘Titania’, ‘Ceres’ and Saniuta’ positive GCA effects were estimated for soluble solids content, whereas ‘Ruben’, ‘Ceres’, ‘Gofert’ and ‘Ores’ had positive GCA effects on the ascorbic acid content in fruit. This indicated a high breeding value of these parental genotypes in terms of the evaluated traits. The significantly positive values of SCA, estimated for the crossing combinations: ‘Big Ben’?×?‘Saniuta’, ‘Ruben’?×?‘Foxendown’, ‘Titania’?×?‘Ceres’, ‘Kupoliniai’?×?‘Saniuta’, ‘Gofert’?×?‘Foxendown’, ‘Gofert’?×?‘Saniuta’, ‘Tines’?×?‘Ceres’ and ‘Tihope’?×?‘Foxendown’ for at least two traits describing fruit yield and quality, were evidence of the interaction of both these parental genotypes in the creation of new dessert-type cultivars of blackcurrant.     

Mining of favorable marker alleles for flag leaf inclination in some rice (<Emphasis Type="Italic">Oryza sativa</Emphasis> L.) accessions by association mapping

Flag leaf angle (FLA) in rice (Oryza sativa L.) is one of the important traits affecting F₁ seed production by mechanization. To elucidate the genetic mechanism of FLA and mine favorable marker alleles for F₁ seed production in rice, we performed a genome-wide association study using phenotypic data over 2 years and genotypic data of 262 pairs of simple sequence repeat (SSR) markers collected from 441 rice accessions. We detected seven SSR marker loci associated with FLA and four loci were novel. The four newly found loci were RM6266 on chromosome 3, RM348 on chromosome 4, RM258 on chromosome 10 and RM7303 on chromosome 11. We found a total of 27 favorable alleles, of which four, i.e., RM348-130 bp, RM7303-90 bp, RM258-180 bp, and RM4835-230 bp, had phenotypic effects larger than 10°. Nine combinations, which increased FLA by 45.7°–94.7° through pyramiding the favorable alleles contained in seven typical accessions, were predicted.     

Combining ability analysis of earliness and yield of potato (<Emphasis Type="Italic">Solanum tuberosum</Emphasis> L.) genotypes in Uganda

Potato (Solanum tuberosum L.) is a major food and cash crop mainly grown by small-scale farmers in the highland regions of Uganda. Changing global weather patterns require varieties that are able to grow within the short rainfall cycles and yield optimally under the prevailing conditions. The objectives of this study were to estimate the combining ability effects for early maturity, yield and yield related traits in potato. Eighteen F¹ families generated from two sets of 12 parents using a North Carolina Design II were evaluated for days to 50% flowering, leaf senescence, yield and yield related traits in two different locations. Both additive and non-additive genetic effects influenced the expression of traits. However, additive genetic effects were predominant over the non-additive for most of the traits. The GCA/SCA ratios were 0.68 and 0.78 for days to 50% flowering and average tuber weight. Broad sense heritability estimates were 0.70 for total tuber weight and 0.78 for days to 50% flowering. The predominance of additive genetic effects imply that, genetic gains can be achieved through different selection methods and traits transferred to the respective progenies. Parents Rwangume, 396,038.107, 395,011.2, NKRK19.17, 393,077.54, Kimuri, and 392,657.8 had desirable GCA effects for the number of days to flowering and yield related traits. Families of Rwangume?×?NKRK19.17, 393,077.54?×?395,011.2, 396,038.107?×?Rwangume and 396,038.107?×?395,011.2 had desirable SCA effects for yield and number of days to 50% flowering. The selected parents and families will be subjected to further clonal evaluation and selection.     

Identification of genetic sources with attenuated <Emphasis Type="Italic">Tomato chlorosis virus</Emphasis>-induced symptoms in <Emphasis Type="Italic">Solanum</Emphasis> (section <Emphasis Type="Italic">Lycopersicon</Emphasis>) germplasm

The whitefly-transmitted Tomato chlorosis virus (ToCV) (genus Crinivirus) is associated with yield and quality losses in field and greenhouse-grown tomatoes (Solanum lycopersicum) in South America. Therefore, the search for sources of ToCV resistance/tolerance is a major breeding priority for this region. A germplasm of 33 Solanum (Lycopersicon) accessions (comprising cultivated and wild species) was evaluated for ToCV reaction in multi-year assays conducted under natural and experimental whitefly vector exposure in Uruguay and Brazil. Reaction to ToCV was assessed employing a symptom severity scale and systemic virus infection was evaluated via RT-PCR and/or molecular hybridization assays. A subgroup of accessions was also evaluated for whitefly reaction in two free-choice bioassays carried out in Uruguay (with Trialeurodes vaporariorum) and Brazil (with Bemisia tabaci Middle-East-Asia-Minor1—MEAM1?=?biotype B). The most stable sources of ToCV tolerance were identified in Solanum habrochaites PI 127827 (mild symptoms and low viral titers) and S. lycopersicum ‘LT05’ (mild symptoms but with high viral titers). These two accessions were efficiently colonized by both whitefly species, thus excluding the potential involvement of vector-resistance mechanisms. Other promising breeding sources were Solanum peruvianum (sensu lato) ‘CGO 6711’ (mild symptoms and low virus titers), Solanum chilense LA1967 (mild symptoms, but with high levels of B. tabaci MEAM1 oviposition) and Solanum pennellii LA0716 (intermediate symptoms and low level of B. tabaci MEAM1 oviposition). Additional studies are necessary to elucidate the genetic basis of the tolerance/resistance identified in this set of Solanum (Lycopersicon) accessions.     

Morph-physiological responses of cotton interspecific chromosome substitution lines to low temperature and drought stresses

Limited knowledge about genetic and physiological traits associated with drought and low temperature stresses and narrow genetic diversity in Upland cotton (Gossypium hirsutum L.) are serious impediments in its genetic improvement. The objectives of this research were to determine the genetic and physiological traits associated with drought and low temperature effects and to identify chromosomal effects on these traits using chromosome substitution (CS) lines from three alien species of Gossypium, G. barbadense, G. tomentosum, and G. mustelinum, respectively. Two experiments were conducted to study low temperature and drought stress effects during seedling emergence and early growth stages in 21 cotton CS-lines with parent, Texas Marker (TM)-1. In Experiment I, plants were grown at optimum (30/22 °C) and low (22/14 °C) temperature conditions under optimum water and nutrient conditions. In Experiment II, plants were grown at optimum water (soil moisture content of 0.167 m³ m^?3) and in drought (soil moisture content 0.105 m³ m^?3) conditions under optimum temperature conditions. Above- and below-ground growth traits including several root traits of the CS lines were assessed at 25 days after sowing. The findings suggest which substituted chromosome or chromosome segment from the alien species likely harbors one or more genes for higher and lower tolerance to low temperature, respectively. CS-T04 and CSB08sh showed higher and lower tolerance to low temperature, respectively and CS-T04 and CS-B22sh showed higher and lower tolerance, respectively, to drought. CS lines are valuable analytical tool and useful genetic resources for targeted exploitation of beneficial genes for drought and low temperature stresses in Upland cotton.     

Assessing Allelopathic Index for Estimating Allelopathic potential of Ajowan Extracts

Allelopathy is a procedure in which secondary metabolites are produced by plants. Some plants may beneficially or antagonistically affect other plants through allelochemical compounds which may be released directly or indirectly from live or dead parts and cause allelopathic and phytotoxic effects. The aim of the present study was to investigate the allelopathic possibility of ajowan (Carum copticum) extracts in different concentrations on morphological indices (germination and growth) of wheat (Triticum sativum), barley (Hurdeum vulgare), corn (Zea maize S.C 704), and safflower (Carthamus tinctorius L.) seedlings as proceeding crops and to develop a comprehensive formula for measuring the negative and positive effects of allelochemicals on growth indices such as shoot and root length, as well as the germination percentage on donor plants. It was demonstrated that increasing concentrations of ajowan extracts significantly decreased the Allelopathic Index, percent of germination, and other growth related indices of all seedlings. Based on the proposed Allelopathic Index of experimental plants, it was revealed that ajowan has posed a higher risk to corn and barley especially at the early stages of the growing cycle, while safflower and wheat indicated more tolerance to growth inhibition effects of ajowan in rotational sequence.