Home gardens: an assessment of their biodiversity and potential contribution to conservation of threatened species and crop wild relatives in Benin

Despite growing literature supporting the importance of home gardens (HG) as biodiversity hotspots, knowledge of patterns of their contribution to conservation of threatened species and crop wild relatives (CWR) across climate and culture in Africa is still limited. This investigation was conducted across three climatic zones to assess the floristic diversity of home gardens and the extent to which they contribute to conservation of threatened species and CWR. Overall, 240 home gardens were sampled and their floristic diversity assessed. The ecological importance of recorded species was determined per climatic zone using the importance value index (IVI). A cluster analysis was performed to group the species according to their IVI-values and a principal component analysis helped to identify the most important species. 285 species were inventoried throughout the study area. Home garden species’ diversity globally declined from the drier to the wetter zone but was highest in the transition zone. The average number of species found per HG was 10.1 and varied weakly across zones (9.07, Guineo-Congolean zone; 10.77, Sudano-Guinean zone; and 10.53, Sudanian zone). The most important home gardens species in the Sudanian, the Sudano-Guinean and the Guineo-Congolean zones were respectively: Abelmoschus esculentus (L.) Moench and Hibiscus asper Hook.f.; Solanum lycopersicum L. and Zea mays L.; Ipomoea aquatica Forssk. and Senna occidentalis (L.) Link. They were mainly vegetables and used as food and/or medicinal plant species. Twenty CWR and twelve threatened species were recorded and were also mainly used for food and medicinal purposes. Thorough research on socioeconomic factors supporting possession of HG and choice of managed species as well as indigenous management strategies of HG and dynamic of traditional knowledge related to HG may help to deeply assess home gardens’ effectiveness in biodiversity conservation.     

Spatial designs and properties of spatial correlation: Effects on covariance estimation

In a spatial regression context, scientists are often interested in a physical interpretation of components of the parametric covariance function. For example, spatial covariance parameter estimates in ecological settings have been interpreted to describe spatial heterogeneity or “patchiness” in a landscape that cannot be explained by measured covariates. In this article, we investigate the influence of the strength of spatial dependence on maximum likelihood (ML) and restricted maximum likelihood (REML) estimates of covariance parameters in an exponential-with-nugget model, and we also examine these influences under different sampling designs—specifically, lattice designs and more realistic random and cluster designs—at differing intensities of sampling (n=144 and 361). We find that neither ML nor REML estimates perform well when the range parameter and/or the nugget-to-sill ratio is large—ML tends to underestimate the autocorrelation function and REML produces highly variable estimates of the autocorrelation function. The best estimates of both the covariance parameters and the autocorrelation function come under the cluster sampling design and large sample sizes. As a motivating example, we consider a spatial model for stream sulfate concentration.     

EGFR mutations in lung cancer: correlation with clinical response to gefitinib therapy

Receptor tyrosine kinase genes were sequenced in non-small cell lung cancer (NSCLC) and matched normal tissue. Somatic mutations of the epidermal growth factor receptor gene EGFR were found in 15of 58 unselected tumors from Japan and 1 of 61 from the United States. Treatment with the EGFR kinase inhibitor gefitinib (Iressa) causes tumor regression in some patients with NSCLC, more frequently in Japan. EGFR mutations were found in additional lung cancer samples from U.S. patients who responded to gefitinib therapy and in a lung adenocarcinoma cell line that was hypersensitive to growth inhibition by gefitinib, but not in gefitinib-insensitive tumors or cell lines. These results suggest that EGFR mutations may predict sensitivity to gefitinib.     

Guidance for the assessment of risks to bees from the use of plant protection products under the framework of Council Directive 91/414 and Regulation 1107/2009

About 15 years have passed since the implementation of Directive 91/414/EEC and the regulatory framework with regard to pesticide use and environmental protection aims, as well as the plant protection techniques involving pesticides, have evolved over this period. In the case of honey bees, further developments and updates with regards to larval testing have been undertaken. Experimental protocols for semi‐field and field testing have been reviewed in detail. Finally, a dedicated risk assessment scheme has been developed for seed coating and soil applications that involve systemic compounds. A revision of the original EPPO Standards: the Risk Assessment Scheme PP 3/10(2) Honeybees and the test guidelines PP1/170 (3) Side‐effects on honeybees has thus been undertaken in order to benefit from these improvements. This paper aims to provide the details of the reasoning on which the revised risk assessment scheme relies as well as providing the necessary references to the data which have been reviewed in the context of this revision.     

Effect of including sweet potato (Ipomoea batatas Lam) meal in finishing pig diets on growth performance,carcass traits and pork quality

The partial replacement of a commercial concentrate at 10‐20% and 15‐30% (the first percentage of each dietary treatment corresponded to weeks 1–3 and the second to weeks 4–7 of the experiment, respectively) by sweet potato meal (SPM; 70% foliage: 30% roots) was evaluated for growth performance, carcass yield, instrumental and sensory pork quality using 36 commercial crossbred pigs (56.8 ± 1.3 kg initial body weight). Three dietary treatments were compared in a randomized complete block design. Most growth, carcass traits and pork quality variables were not affected by the SPM inclusion. Growth performance averaged 868 g/day and feed efficiency 0.24 kg/kg. However, feed intake increased 2.2% (P = 0.04) in pigs fed the 10‐20% SPM diets, in a similar order of magnitude as the decrease in dietary energy. Despite an increase in gastrointestinal tract as a percent of hot carcass weight (+14.7%) (P = 0.03) with SPM inclusion, carcass yield averaged 69.4%. Conversely, decreases in loin yield (?4.2%) (P = 0.05), backfat thickness (?6.0%) (P < 0.01) and pork tenderness (?13%) (P = 0.02) were observed with 15‐30% SPM inclusion. Results suggest that up to 20% SPM inclusion is a viable feed strategy for finishing pigs, easily replicable in small farm settings. © 2016 Japanese Society of Animal Science     

Agarose gel serum protein electrophoresis in cats with and without lymphoma and preliminary results of tandem mass fingerprinting analysis

Background: Serum electrophoretic profiles in cats are poorly characterized with respect to the proteins that comprise the globulin fractions, and interpretation of the electrophoretograms is routinely done in the absence of information about identity of the proteins found within each fraction. Objectives: The aims of this study were to compare protein fractions separated by serum protein electrophoresis (SPE) in healthy cats and in cats with lymphoma and to confirm some component proteins in the major fractions following SPE using tandem mass fingerprinting analysis (TMFA). Methods: Total protein concentration was measured and agarose gel SPE performed on serum from 14 healthy cats and 14 cats with lymphoma. The absolute protein concentration within each fraction was compared between the 2 groups. Bands corresponding to the SPE fractions were excised from the gels of 2 control cats and 1 cat with lymphoma and analyzed by liquid chromatography coupled to mass spectrometry. Results were compared with sequences in the National Center for Biotechnology Information protein database. Results: Median albumin concentrations were significantly decreased and median β‐globulin concentrations were significantly increased in cats with lymphoma. Narrow electrophoretic spikes were present in the β/γ‐globulin fraction in 3 cats with lymphoma. Following TMFA, multiple proteins were identified in each fraction, and their mobility agreed with results from previous studies generated using alternative techniques. Inter‐α (globulin) inhibitor 4 was identified in feline serum for the first time. Conclusions: Cats with lymphoma had lower albumin and higher β‐globulin concentrations than did healthy cats. Despite limitations of one‐dimensional agarose gel SPE, TMFA provided preliminary data to confirm the protein components of the various fractions.     

Latitudinally distinct stocks of Atlantic cod face fundamentally different biophysical challenges under on-going climate change

The reproductive success of marine ectotherms is especially vulnerable in warming oceans due to alterations in adult physiology, as well as embryonic and larval survival prospects. These vital responses may, however, differ considerably across the species' geographical distribution. Here we investigated the life history, focusing on reproductive ecology, of three spatially distant populations (stocks) of Atlantic cod (Gadus morhua, Gadidae) (50–80° N), in the Irish/Celtic Seas-English Channel Complex, North and Barents Seas, under past and projected climate. First, experimental tracking of spawning behaviour evidenced that the ovulation cycle is highly distressed at ≥9.6 (±0.25)°C (T_up). This knife-edge threshold resulted in erratic spawning frequencies, whereas vitellogenin sequestration remained unaffected, indicating endocrine rather than aerobic scope constraints. Cod in the Celtic Sea-English Channel are, therefore, expected to show critical stock depensation over the next decades as spawning grounds warm above T_up, with Irish Sea cod subsequently at risk. Second, in the relatively cooler North Sea, the northward retraction of Calanus finmarchicus (Calanidae) and Para-Pseudocalanus spp. (Clausocalanidae) (1958–2017) limit cod larvae feeding opportunities, particularly in the southernmost subarea. However, the contrasting increase in Calanus helgolandicus (Calanidae) does not counteract this negative effect, likely because cod larvae hatch ahead of its abundance peaks. Overfishing again comes as a twin effect. Third, in the still relatively cold Barents Sea, the sustainably harvested cod benefit from improved food conditions in the recent ice-free polar region but at the energetic cost of lengthier and faster spawning migrations. Consequently, under climate change local stocks are stressed by different mechanistic factors of varying management severity.