Analysis of spatial and temporal risk of agricultural loss due to flooding in paddy farms

Evaluating agricultural loss due to flooding is essential for defining an appropriate risk level in flood management projects. This research introduces a method for computing annual damage risk for rice fields with respect to both spatial and temporal pattern of floods, while considering the effect of crop growth stages on the total damage. For finding the spatial pattern of floods, HEC-RAS was employed to derive selected physical parameters of floods of interest and then a physical loss function was used to calculate the unconditional loss over flood prone areas. A time-dependent loss function was introduced for rice to determine the effect of growth on damages derived through the physical loss function. Due to the seasonal nature of agricultural risk, frequency analysis was performed for seasonal discharges for each growth stage of rice. A method was introduced to use the concept of Expected Annual Damage in agricultural fields. A method called “AGEAD” was introduced for evaluating short-term risk for agricultural activities considering their inherent spatial and temporal characteristics. Results showed that damages evaluated by employing AGEAD were completely different from what was obtained by applying a flood of defined return period, i.e. from the results of long-term risk evaluation. While it is common to attribute a unique predicted loss to all flood prone areas, AGEAD application showed that different zones in flooded paddy fields were subjected to different amount of damages from 100 to 0%.     

Seed germination and seedling emergence of Iberian starthistle (Centaurea iberica)

Centaurea iberica has become a problematic weed in some regions of western Iran. Little published data are available in the literature regarding its seed germination and seedling emergence. Therefore, this study was conducted in order to evaluate the effects of different factors on C. iberica seed germination. The highest level of germination of C. iberica was achieved at fluctuating temperatures of 15/25°C (night/day). The seed germination of C. iberica was stimulated by light and little germination occurred under continuous darkness. The pH solution did not have any effect on its seed germination. Centaurea iberica was tolerant to both salt and water stress. The level of seedling emergence was greatest for the seeds that were located on the soil surface, declining with depth, and no seedling emerged from a soil depth of 4 cm. These results indicated that C. iberica has the potential to infest more fields in the western parts of Iran, particularly rainfed areas. Based on the results of this study, crops with a dense canopy and/or planted in narrow‐row intervals could be used to diminish the seed germination of C iberica. In addition, the adoption of tillage systems that bury the seeds of C. iberica under the 4 cm depth would effective in its management.     

Assessment of different anther culture approaches to produce doubled haploids in cucumber (<Emphasis Type="Italic">Cucumis sativus</Emphasis> L.)

Cucumber is one of the most important vegetable crops worldwide, which makes it a good candidate to produce doubled haploid (DH) lines to accelerate plant breeding. Traditionally, these approaches involved induction of gynogenesis or parthenogenesis with irradiated pollen, which carries some disadvantages compared to androgenesis. Despite this, studies on anther/microspore cultures in cucumber are surprisingly scarce. Furthermore, most of them failed to unambiguously demonstrate the haploid origin of the individuals obtained. In this work we focused on anther cultures using two cucumber genotypes, different previously published protocols for anther culture, different in vitro culture variants to make it more efficient, and most importantly, a combination of flow cytometry and microsatellite molecular markers to evaluate the real androgenic potential and the impact of anther wall tissue proliferation. We developed a method to produce DH plants involving a bud pretreatment at 4 °C, a 35 °C treatment to anthers, culture with BAP and 2,4-D, and induction of callus morphogenesis by an additional 35 °C treatment and sequential culture first in liquid medium in darkness and second in solid medium with light. We also found that factors such as genotype, proliferation of anther wall tissues, orientation of anthers in the culture medium and growth regulator composition of the initial anther culture medium have a remarkable impact. Our rate of chromosome doubling (81%) was high enough to exclude additional chromosome doubling steps. Together, our results present androgenesis as an improvable but yet more convenient alternative to traditional gynogenesis and parthenogenesis-based approaches.     

The Effect of Vermicompost on Transformation Rate of Available P Applied as Chemical Fertilizer in a Calcareous Clay Soil

The effects of vermicompost (VC) (0% and 1% w/w) on treated calcareous clay soil with 0 and 50 mg phosphorus (P) kg^?1 as calcium phosphate [Ca(H₂PO₄)₂.H₂O] was investigated. The soil samples were incubated for 7, 30, 60, 120, and 150 d at 25 ± 1°C and Olsen-P was measured after each incubation time. Results showed that Olsen-P increased 36% and 38% after VC addition in treated soil with 0 and 50 mg P kg^?1, respectively. Recovery of Olsen-P in treated soils with VC, combined fertilizer VC + P, and fertilizer P was 42%, 42%, and 17%, respectively. The rate coefficient in treated soils with fertilizer, VC, and combined fertilizer VC + P was 0.033, 0.026, and 0.023 mg kg^?1 d^?1/2, respectively. It seems that the process that leads to the decrease in available P in amended soils, is controlled by P diffusion into sorption sites in micropores of aggregates.     

Screening wheat germplasm for seedling root architectural traits under contrasting water regimes: potential sources of variability for drought adaptation

In this study, we selected 180 accessions from different wild relatives of wheat (Aegilops–Triticum species) and tested them in the presence of a tolerant and a sensitive control variety under well-watered and drought-stressed conditions. The results of analysis of variance for dry masses and all measured root traits showed that water regimes, accession and species main effects were highly significant. Drought stress significantly declined shoot dry mass (59.42%), root length (37.85%) and the total number of branch roots (36.25%), but increased the root-to-shoot ratio (75.00%), specific root length (64.19%) and root tissue density (29.46%). Principal component analysis for 182 individuals and 12 species groups identified two components that explained 75.67 and 82.39% of the total variation in dry mass and root traits under drought-stressed conditions, respectively. Taking together, our results identified 12 accessions with superior tolerance to drought stress. Remarkably, four species of wild relatives – Ae. cylindrica (DC genome), Ae. neglecta (UM genome), Ae. speltoides (B genome) and Ae. tauschii (D genome) – responded well to drought stress. The potential of these species could be used for molecular analysis such as marker assisted selection and gene mapping, ultimately aimed at breeding for root traits with improved adaptation to drought environments.     

Molecular characterization of a pigeon paramyxovirus type 1 virus isolated from Eurasian collared doves in Iran, 2017

In September 2017, an outbreak with high mortality, which showed the typical signs of ND, occurred among a flock of more than 2000 Eurasian collared doves in Konarak, southeast of Iran. A confirmed pigeon paramyxovirus type 1 strain was isolated from the brain tissues of the dead doves. The isolate, which was called Pigeon/Iran/Konarak/Barin/2017, was classified as a highly velogenic NDV. Complete genome sequencing and phylogenetic analysis showed that the isolate belonged to subgenotype XXI.2, which has never been reported from Iran before. The isolate had the highest homology (96.15%) with early 2010s Italian isolates. Further studies will be required to understand the diversity better.