Aurasperone A Inhibits SARS CoV-2 In Vitro: An Integrated In Vitro and In Silico Study

Several natural products recovered from a marine-derived Aspergillus niger were tested for their inhibitory activity against SARS CoV-2 in vitro. Aurasperone A (3) was found to inhibit SARS CoV-2 efficiently (IC₅₀ = 12.25 µM) with comparable activity with the positive control remdesivir (IC₅₀ = 10.11 µM). Aurasperone A exerted minimal cytotoxicity on Vero E6 cells (CC₅₀ = 32.36 mM, SI = 2641.5) and it was found to be much safer than remdesivir (CC₅₀ = 415.22 µM, SI = 41.07). To putatively highlight its molecular target, aurasperone A was subjected to molecular docking against several key-viral protein targets followed by a series of molecular dynamics-based in silico experiments that suggested M^pro to be its primary viral protein target. More potent anti-SARS CoV-2 M^pro inhibitors can be developed according to our findings presented in the present investigation.     

Simulating the Production of Rice Genotypes by Flood Management and End-Season Water Stress Conditions Using AquaCrop Model

ABSTRACT

The present study was conducted to assess the ability of AquaCrop model in predicting of grain and biological yield of rice genotypes in water management. A two-year field experiment was conducted at the experimental farm of the Iranian Rice Research Institute in Rasht, Iran from 2016 to 2017. The experiment was established in a split-plot design with two irrigation management (continuous submergence and end season water stress) as the main plot, fourth rice genotypes as the sub-plot and three replications. The goodness-of-fit between observed and simulated grain yield and final biomass was assessed by means of the coefficient of determination (R ²), the absolute and normalized root mean square errors (RMSE). The RMSE_n of predicting grain yield at calibration and evaluation stages was in the range of 6–12% and 6–8% for biological yield. The results indicated that AquaCrop model is suitable to predict grain yield and biological yield of rice genotypes in northern Iran. AquaCrop model can be used to determine optimization strategies to improve the water consumption of rice genotypes.     

PCB removal,soil enzyme activities,and microbial community structures during the phytoremediation by alfalfa in field soils

Purpose  

An in situ phytoremediation trial was developed in order to investigate the function of alfalfa during a 2-year bioremediation of an agricultural soil contaminated with polychlorinated biphenyls (PCBs). The study was conducted with the aim to better understand the application potential of PCB phytoremediation at field scale.     

Atmospheric Mercury Fluxes in a Southern Boreal Forest and Wetland

Total gaseous mercury (TGM) fluxes from the forest floor and a boreal wetland were measured by a flux chamber technique coupled with an automatic mercury vapour analyser. The fluxes were measured at three sampling sites in southern Finland, 61°14′ N, 25°04′ E in summer 2007, with additionally in situ TGM concentrations in the air at one of the sites and mercury bulk deposition at another. Most of the flux data were collected during the daytime. At one of the sites, diurnal flux behaviour was studied, and a clear cycle with an afternoon maximum and a night minimum was observed. The highest emissions (up to 3.5 ng m⁻² h⁻¹) were observed at the forest floor site having a moss and grass cover. At the wetland and litter-rich forest floor sites, the emissions were below 1 ng m⁻² h⁻¹ and sometimes negative (down to −1.0 ng m⁻² h⁻¹), indicating mercury uptake. The measured average fluxes in August were 0.9 ± 1.1 and 0.2 ± 0.3 ng m⁻² h⁻¹ for the forest floor sites and wetland sites, respectively. The flux data were compared with the mercury bulk deposition, which proved to be of the same magnitude, but opposite in sign. At the mossy forest floor site, the extrapolated TGM emissions were 130% of the Hg deposition in August 2007. Comparison with other studies showed that the fluxes in background areas are relatively uniform, regardless of measurement site location and method used. Airborne TGM remained at the background level during the study, with an average value of 1.3 ± 0.2 ng m⁻³; it frequently showed a diurnal cycle pattern.     

Interactive effects of Cd and PAHs on contaminants removal from co-contaminated soil planted with hyperaccumulator plant <Emphasis Type="Italic">Sedum alfredii</Emphasis>

Purpose  

Soil contamination by multiple organic and inorganic contaminants is common but its remediation by hyperaccumulator plants is rarely reported. The growth of a cadmium (Cd) hyperaccumulator Sedum alfredii and removal of contaminants from Cd and polycyclic aromatic hydrocarbons (PAHs) co-contaminated soil were reported in this study.     

Performance and Kinetic Study on Bioremediation of Diazo Dye (Reactive Black 5) in Wastewater Using Spent GAC–Biofilm Sequencing Batch Reactor

Combinations of sequential anaerobic and aerobic process enhance the treatment of textile wastewater. The aim of this study was to investigate the treatment of diazo dye Reactive Black 5 (RB5)-containing wastewater using granular activated carbon (GAC)–biofilm sequencing batch reactor (SBR) as an integration of aerobic and anaerobic process in a single reactor. The GAC–biofilm SBR system demonstrated higher removal of COD, RB5 and aromatic amines. It was observed that the RB5 removal efficiency improved as the concentration of co-substrate in the influent increased. The alternative aeration introduced into the bioreactor enhanced mineralization of aromatic amines. Degradation of RB5 and co-substrate followed second-order kinetic and the constant (k ₂) values for COD and RB5 decreased from 0.002 to 0.001 and 0.004 to 0.001 l/mg h, respectively, as the RB5 concentration increased from 100 to 200 mg/l in the GAC–biofilm SBR system.     

塔里木盆地多种沙源类型沙通量异变特征研究

以塔里木盆地周边地区多种沙尘源地为研究区,通过塔中、肖塘、若羌、策勒四个风沙观测场获取的沙尘暴过程中贴地层风向、风速数据以及风蚀传感器实测的撞击颗粒数等数据计算出各地起沙临界摩擦速度,利用Gillette经典的垂直沙尘通量及Lettau水平沙尘通量公式对若羌、策勒、塔中、肖塘沙尘通量进行了估算,并通过各层实测的梯度风速作为背景值界定出塔里木盆地多种沙源类型沙通量变化比对特征,结果表明:垂直沙尘通量F量级为10-8kg/(m2.s),水平沙尘通量Q量级为10-4 kg/(m.s);风速相同情况下,F若羌最大,策勒次之,塔中、肖塘较小;Q若羌值最大,策勒次之,塔中第三,肖塘最小。垂直沙通量F与风速都表现出较好的线性相关,风速递增,垂直沙通量递增;风速递减,垂直沙通量递减。在风速递增幅度相同条件下,若羌Q值递增幅度最大,策勒次之,塔中、肖塘基本相同。     

Arbuscular mycorrhizal fungi improve the growth and phosphorus uptake of mung bean plants fertilized with composted rock phosphate fed dung in alkaline soil environment

Abstract

Inoculation effect of arbuscular mycorrhizal fungi (AMF) on phosphorus (P) transfer from composted dung of cattle with a diet supplemented with powdered rock phosphate (RP) and their successive uptake by mung bean plants was assessed in alkaline soil. The efficacy of composted RP fed dung alone or/and in combination with AMF inoculums containing six different species were compared with SSP in six replicates per treatment in pots. The results showed that the association of AMF with composted RP fed dung had a positive effect on mung bean shoot (3.04?g) and root (2.62?g) biomass, chlorophyll (a, b), carotenoid contents and N (58.38?mg plant^?1) and P (4.61?mg plant^?1) uptake. Similarly, the percent roots colonization (56%) and nodulation of mung bean plant roots and their post-harvest soil properties were also improved by the inoculation of AMF together with composted RP fed dung. It is concluded that the combined application of AMF with composted RP fed dung has almost the same effect as SSP for improving mung bean plants growth and their nutrients uptake. Moreover, AMF inoculants can be used as a suitable biofertilizer in combination with locally available organic sources of fertilizers for improving P status and growth of plants in alkaline soils.     

Critical nutrient concentrations and antagonistic and synergistic relationships among the nutrients of NFT‐grown young tomato plants

Critical concentrations of nitrogen (N), phosphorus (P), potassium (K), calcium (Ca), magnesium (Mg), iron (Fe), zinc (Zn), and manganese (Mn) with respect to dry matter yield end antagonistic and synergistic relationships among these nutrients were studied in which tomato (Lycopersicon esculentum L.) was grown in recirculating nutrient solution (NFT). Increments of nutrient elements in the nutrient solution increased the proportional rate of the corresponding nutrient elements. Increasing levels of N negatively correlated with plant P and positively correlated with Ca, Fe, and Zn. Iron and Mn contents of the plants were increased and N, K, Ca, and Mg were decreased as a function of P applied. Increases in K in the nutrient solution caused increases in the concentrations of K, N, P, and Zn, and decreases in the concentration of Ca and Fe. Applied Ca increased the concentrations of Ca and N, and decreased the concentrations of P, Mg, Fe, Zn, and Mn. Potassium, Ca, and Fe contents of the plants were decreased and Zn increased, while N, P, and Mn were not affected by the increasing levels of external Mg. Iron suppressed the plant Mg, Zn, and Mn contents. Synergism between Zn and Fe was seen, while P, K, Ca, Mg, and Mn contents were not affected by Zn levels. Potassium, Ca, Mg, and Fe were not responsive to applied Mn, however, N and P contents of the plants were decreased at the highest levels of Mn.     

Soil nitrogen availability alters rhizodeposition carbon flux into the soil microbial community

Purpose

Soil microorganisms are important in the cycling of plant nutrients. Soil microbial biomass, community structure, and activity are mainly affected by carbon substrate and nutrient availability. The objective was to test if both the overall soil microbial community structure and the community-utilizing plant-derived carbon entering the soil as rhizodeposition were affected by soil carbon (C) and nitrogen (N) availability.

Materials and methods

A ¹³C-CO₂ steady-state labeling experiment was conducted in a ryegrass system. Four soil treatments were established: control, amendment with carboxymethyl cellulose (CMC), amendment with ammonium nitrate (NF), combined CMC and NF. Soil phospholipid fatty acid (PLFA) and ¹³C labeling PLFA were extracted and detected by isotope ratio mass spectrometer.

Results and discussion

The combined CMC and NF treatment with appropriate C/N ratio (20) significantly enhanced soil microbial biomass C and N, but resulted in lower soil inorganic N concentrations. There was no significant difference in soil PLFA profile pattern between different treatments. In contrast, most of the ¹³C was distributed into PLFAs 18:2ω6,9c, 18:1ω7c, and 18:1ω9c, indicative of fungi and gram-negative bacteria. The inorganic-only treatment was distinct in ¹³C PLFA pattern from the other treatments in the first period of labeling. Factor loadings of individual PLFAs confirmed that gram-positive bacteria had relatively greater plant-derived C contents in the inorganic-only treatment, but fungi were more enriched in the other treatments.

Conclusions

Amendments with CMC can improve N transformation processes, and the ryegrass rhizodeposition carbon flux into the soil microbial community is strongly modified by soil N availability.