Thymine dimerization in DNA is an ultrafast photoreaction

Femtosecond time-resolved infrared spectroscopy was used to study the formation of cyclobutane dimers in the all-thymine oligodeoxynucleotide (dT)18 by ultraviolet light at 272 nanometers. The appearance of marker bands in the time-resolved spectra indicates that the dimers are fully formed approximately 1 picosecond after ultraviolet excitation. The ultrafast appearance of this mutagenic photolesion points to an excited-state reaction that is approximately barrierless for bases that are properly oriented at the instant of light absorption. The low quantum yield of this photoreaction is proposed to result from infrequent conformational states in the unexcited polymer, revealing a strong link between conformation before light absorption and photodamage.     

The southern route "out of Africa": evidence for an early expansion of modern humans into Arabia

The timing of the dispersal of anatomically modern humans (AMH) out of Africa is a fundamental question in human evolutionary studies. Existing data suggest a rapid coastal exodus via the Indian Ocean rim around 60,000 years ago. We present evidence from Jebel Faya, United Arab Emirates, demonstrating human presence in eastern Arabia during the last interglacial. The tool kit found at Jebel Faya has affinities to the late Middle Stone Age in northeast Africa, indicating that technological innovation was not necessary to facilitate migration into Arabia. Instead, we propose that low eustatic sea level and increased rainfall during the transition between marine isotope stages 6 and 5 allowed humans to populate Arabia. This evidence implies that AMH may have been present in South Asia before the Toba eruption.     

The historic influence of dams on diadromous fish habitat with a focus on river herring and hydrologic longitudinal connectivity

The erection of dams alters habitat and longitudinal stream connectivity for migratory diadromous and potamodromous fish species and interrupts much of organismal exchange between freshwater and marine ecosystems. In the US, this disruption began with colonial settlement in the seventeenth century but little quantitative assessment of historical impact on accessible habitat and population size has been conducted. We used published surveys, GIS layers and historical documents to create a database of 1356 dams, which was then analyzed to determine the historical timeline of construction, use and resultant fragmentation of watersheds in Maine, US. Historical information on the anadromous river herring was used to determine natural upstream boundaries to migration and establish total potential alewife spawning habitat in nine watersheds with historic populations. Dams in Maine were constructed beginning in 1634 and by 1850 had reduced accessible lake area to less than 5% of the virgin 892 km² habitat and 20% of virgin stream habitat. There is a near total loss of accessible habitat by 1860 that followed a west-east pattern of European migration and settlement. Understanding historic trends allows current restoration targets to be assessed and prioritized within an ecosystem-based perspective and may inform expectations for future management of oceanic and freshwater living resources.     

The practical use of semiparametric models in field trials

This article examines the practical use of semiparametric models in the analysis of field trials—that is, models with parameterized treatment effects and additive terms derived by a data-driven approach using a locally weighted running line smoother (loess). We discuss graphical methods to identify spatial structure in the data and model selection procedures to choose the degree of smoothing. Once the spatial part of the model has been chosen, hypotheses about the treatment effects may be tested. Semiparametric models are used to analyze two barley field trials exhibiting spatial trends. The first has a single experimental treatment and a row-column design. The second has a split-plot design, and we use a semiparametric model which accounts for the randomization at the different strata of this design. We compare the semiparametric analyses with classical analyses of variance and with alternative spatial models. We find that semiparametric models give a good insight into spatial variation in the field and can improve the precision of parameter estimates.     

Effect of therapeutic dietary biotin on the healing of uncomplicated sole ulcers in dairy cattle--a double blinded controlled study.

The objective of this study was to investigate the influence of orally administered biotin on the healing of uncomplicated sole ulcers in dairy cattle. In a double-blind controlled study, 24 dairy cows with a mild, uncomplicated sole ulcer on a lateral hind claw were given either 40 mg biotin per day or a placebo feed over a period of 50 days. An orthopaedic shoe was fitted to the medial claw of the affected foot. The healing process was assessed clinically and by histological examination of horn samples. In the biotin-treated animals, the newly formed epidermis covering the sole ulcers was found to be of significantly better histological quality after 50 days than at the start of the study. The significant improvement in histological horn quality found in the biotin-treated animals suggests that biotin exerts a positive influence on the healing of sole ulcers, however the study period of 50 days appears to have been too short to permit macroscopic detection of the improvement in horn quality.     

The enantiomeric composition of triadimenol produced during metabolism of triadimefon by fungi. Part II: Differences between fungal species

The fungi Coriolus versicolor, Cladosporium cucumerinum, Botrytis cinerea and Fusarium culmorum, in shake culture, metabolised triadimefon to triadimenol. Analyses by gas–-liquid chromatography of the triadimenol showed that the fungi produced different qualitative and quantitative combinations of the four possible enantiomers, and that these differences were reproducible. The relationship between the enantiomeric composition of the triadimenol produced and the sensitivity of the test fungi to triadimefon, is discussed in the light of published data on the differences in antifungal activity shown by these enantiomers.     

Response of susceptible and resistant peach-potato aphids Myzus persicae (Sulz.) to insecticides in leaf-dip bioassays

The response of susceptible (S), moderately resistant (R₁) and strongly resistant (R₂) peach-potato aphids, Myzus persicae (Sulz.) to organophosphorus, carbamate and pyrethroid insecticides was tested by a leaf-dip bioassay. The aphids were placed on potato leaves (dipped in insecticide solutions 1–2 or 24 h before infestation) and their mortality examined 48 h later. R₁ aphids were virtually susceptible to most of the carbamates, demephion and acephate, but were slightly to moderately resistant (2.1–9.4 times) to permethrin, cypermethrin and (S)-α-cyano-3-phenoxybenzyl (1R)-cis-3-(2,2-dibromovinyl)-2,2-dimethylcyclopropanecarboxylate (I), (NRDC 161), to 5,6,7,8-tetrahydro-2-methylquinolin-4-yl dimethylcarbamate (II), (Hoechst 25 682) and demeton-S-methyl. R₂ aphids resisted more strongly or very strongly (between 65 and 1280 times) the pyrethroids, demeton-S-methyl (×94), II (×83) and demephion (×9), and were slightly to moderately (2–5 times) resistant to acephate, pirimicarb, ethiofencarb and 2-(dimethylcarbamoyloxyimino)-3-methoxyimino-N,N- dimethylbutyramide (III), (DPX 3853). Both resistant strains were susceptible to nitrilacarb [4,4-dimethyl-5-(methylcarbamoyloxyimino)pentanenitrile] complex (1:1) with zinc chloride (IV), (AC 85 258). The implications of these results in terms of practical aphid control are discussed.     

Evaluation of data from mitogen studies in CBA mice: comparison of counts per minute, stimulation index and relative proliferation index.

Lymphocyte proliferation assays were conducted on splenic lymphocytes collected from CBA mice that had been exposed to lead acetate or cadmium chloride for 10 weeks. The ability of mitogens concanavalin A and lipopolysaccharide, as well as purified protein derivative, to induce proliferation in vitro in the presence or absence of macrophages was assessed. Data were compared by using counts per minute (cpm), stimulation index, and relative proliferative index. Data varied considerably within treatment groups performed on different days, which is a typical characteristic of mitogen proliferation investigations. According to cpm data, only 3 of 21 treatments were significantly (P less than 0.05) altered when compared with controls. The stimulation indices were highly influenced by background counts and frequently did not correlate with cpm. The relative proliferative index, on the other hand, calculates net cpm, closely corresponds to cpm, compensates for background counts and is affected less by variation than is the stimulation index, and selected cutoff values give a more sensitive measure for determination of altered proliferative responses when statistical procedures are not applicable. Effects of macrophages, carbon dioxide, and bovine fetal serum on lymphocyte transformation are discussed.