Structural and Immunochemical Studies of the Lipopolysaccharide from the Fish Pathogen,Aeromonas bestiarum Strain K296, Serotype O18

Chemical analyses and mass spectrometry were used to study the structure of the lipopolysaccharide (LPS) isolated from Aeromonas bestiarum strain K296, serotype O18. ESI-MS revealed that the most abundant A. bestiarum LPS glycoforms have a hexa-acylated or tetra-acylated lipid A with conserved architecture of the backbone, consisting of a 1,4′-bisphosphorylated β-(1→6)-linked d-GlcN disaccharide with an AraN residue as a non-stoichiometric substituent and a core oligosaccharide composed of Kdo₁Hep₆Hex₁HexN₁P₁. 1D and 2D NMR spectroscopy revealed that the O-specific polysaccharide (OPS) of A. bestiarum K296 consists of a branched tetrasaccharide repeating unit containing two 6-deoxy-l-talose (6dTalp), one Manp and one GalpNAc residues; thus, it is similar to that of the OPS of A. hydrophila AH-3 (serotype O34) in both the sugar composition and the glycosylation pattern. Moreover, 3-substituted 6dTalp was 2-O-acetylated and additional O-acetyl groups were identified at O-2 and O-4 (or O-3) positions of the terminal 6dTalp. Western blots with polyclonal rabbit sera showed that serotypes O18 and O34 share some epitopes in the LPS. The very weak reaction of the anti-O34 serum with the O-deacylated LPS of A. bestiarum K296 might have been due to the different O-acetylation pattern of the terminal 6dTalp. The latter suggestion was further confirmed by NMR.     

Linking monitoring and intervention for improved management of tigers in the Sundarbans of Bangladesh

Baseline data on distribution and abundance of tigers in the Sundarbans is required to identify problem areas and evaluate management strategies. This paper outlines a khal (creek) bank survey of track set frequency throughout the Bangladesh Sundarbans to aid formulation of a management-driven monitoring program. Three teams of two observers surveyed a total of 1 201 km of waterways throughout the Sundarbans, recording 1 338 tiger track sets. These sets became unrecognizable as tiger sign after a mean 10 days (range 6-14). Proportion of detectable sign recorded was 0.91. Mean (±standard error) sample unit track frequency was 1.12 ± 0.86 track sets/km of khal. The mean coefficient of variance in sample unit track rate, estimated by multiple counts of six sample units, was 0.21 (range 0.06-0.34). Track frequency generally increased from northeast to southwest. Four sample units (6%) had signs of reproduction, with a mean litter size of 1.75 ± 0.5. Monte Carlo simulation suggests a monitoring program of one complete survey every two years will have power of 0.8 (α = 0.2), to detect track frequency declines of ?19% and increases of ?17%. We recommend this monitoring scheme be implemented on the Indian side of the Sundarbans to provide a standard assessment of the tiger population and to form the basis for setting management objectives and evaluating transboundary conservation initiatives.     

Effects of steam disinfestation on community structure,abundance and activity of heterotrophic,denitrifying and nitrifying bacteria in an organic farming soil

Steam disinfestation is an ecologically less harmful alternative to synthetic chemical fumigants such as methyl bromide, which is being phased out of use due to its ozone-depleting properties. Although previous studies have characterized the effects of steaming on targeted pests, soil microorganisms, including beneficial ones, may be strongly influenced by this agricultural practice, since: (1) high temperature disturbs most soil microorganisms; and (2) disinfestation-induced changes in the soil environment can indirectly affect soil microbiota. The impact of soil disinfestation on functional bacterial communities was evaluated particularly in view of their role in nitrogen cycling. The short-term effects of steam disinfestation on heterotrophic bacteria, denitrifying and nitrifying bacteria, and their ability to recover after this disturbance were examined by surveying the enzyme activity, size and genetic structure of each community. Our results show that: (1) steaming immediately induced significant decrease in community activity and size, and changes in community composition, nitrifying bacteria being mostly affected; (2) abundances of each community reached values equal or higher than those observed in control soil within 15–60 days after steaming, but community structures remained very different as compared to those in control soil; and (3) for each activity, no complete recovery was observed after the disturbance: substrate induced respiration and denitrification increased but remained lower in steamed soil, whereas nitrification was not detectable after 62 days. Our results show that these effects of steaming on key soil functional communities can have important, long-lasting implications for nitrogen cycle that should be taken into account when evaluating the influence of such an agricultural practice.     

Absence of three known benzimidazole resistance mutations in Trichostrongylus tenuis, a nematode parasite of avian hosts

Benzimidazole (BZ) resistance is widespread in nematode parasites of livestock, but very little is known about the levels of BZ resistance in parasites with avian hosts. We investigated BZ resistance in Trichostrongylus tenuis, a nematode parasite of red grouse, Lagopus lagopus scotica. BZ anthelmintics had been in use in this system for up to 15 years, yet existing phenotypic evidence for resistance was inconclusive. We screened 1530 individuals from 14 populations at the principal β-tubulin locus for BZ resistance (isotype 1, residue 200) and 940 of these at two further resistance sites (isotype 1, residue 167; isotype 2, residue 200). No BZ resistant genotypes were found. Alternative mechanisms may be responsible for BZ resistance in this system, or the method and timing of treatments may reduce selection pressure for BZ resistance by creating substantial refugia for susceptible genotypes.     

Prostatic abscess in a neutered cat

A 6-year-old, male castrated domestic shorthair cat was presented for evaluation of lethargy, vomiting, anorexia, and constipation. Physical examination revealed an elevated body temperature and an extramural colonic mass. Abdominal ultrasonography demonstrated a hypoechoic mass measuring 2.2 cm in maximum dimension immediately caudal to the bladder. Cytological evaluation of a fine-needle aspirate confirmed the mass was a prostatic abscess. Abdominal celiotomy and prostatic omentalization were successful in resolving clinical abnormalities. Feline prostatic abscessation is a rare condition that has not been previously reported and may have a good outcome if treated early and appropriately.     

Deep‐water cirripedes colonizing dead shells of the cephalopod Nautilus macromphalus from New Caledonian waters

Fossil cephalopods are frequently encrusted by epibionts; however, determining whether encrustation occurred prior to or post‐mortem to the host, and whether the final environment of deposition corresponds to the habitat of encrustation is complex. The present paper describes cirripede epibionts, their calcareous bases and their attachment scars on 6 post‐mortem shells of Nautilus macromphalus, collected from deep water off New Caledonia. The cirripedes have left both cemented calcareous bases of Hexelasma and scars associated with bioerosion and discoloration produced by verrucomorph barnacles. Live cirripedes included a Metaverruca recta, with articulated opercular plates and organic tissue (on a shell that had been exposed on the sea floor for at least 150 years), and specimens of Hexelasma velutinum, one of which was partly attached to an internal surface of a shell. The disposition of verrucomorphs indicates that most Nautilus shells were colonized post‐mortem rather than during a floating stage. However, as cirripedes are known to have colonized living Nautilus, some Hexelasma, preserved only as calcareous eroded bases, may represent specimens that settled on a living Nautilus. The degree of bioerosion and discoloration induced by verrucomorph barnacles varies according to the surface preservation of Nautilus shells, with deeper and discolored traces preserved on old and degraded shells. Traces made by verrucomorphs described here are ellipsoidal and a new ichnotaxon, Anellusichnus ellipticus, is proposed to accommodate them. Importantly, verrucomorphs and other cirripede taxa with membranous bases that were attached to pristine shells may not leave any substantial scars, and, thus, will be difficult to detect in the fossil record.     

Scale-specific land cover thresholds for conservation of stream invertebrate communities in agricultural landscapes

Context

In agricultural landscapes, riparian forests are used as a management tool to protect stream ecosystems from agricultural activities. However, the ability of managers to target stream protection actions is limited by incomplete knowledge of scale-specific effects of agriculture in riparian corridor and catchment areas.

Objectives

We evaluated scale-specific effects of agricultural cover in riparian corridor and catchment areas on stream benthic macroinvertebrate (BMI) communities to develop cover targets for agricultural landscapes.

Methods

Sixty-eight streams assigned to three experimental treatments (Forested Riparian, Agricultural Riparian, Agricultural Catchment) were sampled for BMIs. Ordination and segmented regression were used to assess impacts of agriculture on BMI communities and detect thresholds for BMI community metrics.

Results

BMI communities were not associated with catchment agricultural cover where the riparian corridor was forested, but were associated with variation in catchment agriculture where riparian forests had been converted to agriculture. Trait-based metrics showed threshold responses at greater than 70% agricultural cover in the catchment. Increasing agriculture in the riparian corridor was associated with less diverse and more tolerant BMI communities. Eight metrics exhibited threshold responses ranging from 45 to 75% agriculture in the riparian corridor.

Conclusions

Riparian forest effectively buffered streams from agricultural activity even where catchment agriculture exceeds 80%. We recommend managers prioritize protection of forested riparian corridors and that restore riparian corridors where agricultural cover is near identified thresholds be a secondary priority. Adoption of catchment management actions should be effective where the riparian corridor has been converted to agriculture.

     

Prey distribution,potential landscape supplementation,and urbanization affect occupancy dynamics of American mink in streams

Context

Land-use change can reduce and isolate suitable habitat generating spatial variation in resource availability. Improving species distribution models requires a multi-scale understanding of resource requirements and species’ sensitivities to novel landscapes.

Objectives

We investigated how the spatial distribution of supplementary habitats (permanent wetlands), urbanization, water depths, and distribution of a key prey species (muskrat; Ondatra zibethicus) influence occupancy dynamics of American mink (Neovison vison). Although mink are widespread across North America and a destructive invasive species in Europe, South America, and Asia, we have a limited understanding of factors affecting their spatial distribution.

Methods

We used 6 years of presence–absence data (2007–2012) to evaluate occupancy dynamics of mink at 58–90 stream sites along an urbanization gradient in Illinois, USA. We predicted negative relationships between stream occupancy and urban land cover and distance from permanent wetlands, and positive associations with muskrat presence, water depth, and riparian zone width.

Results

Contrary to our hypothesis, stream sites closer to permanent wetlands had lower occupancy and colonization rates for mink. Occupancy and colonization rates were higher at sites with deeper water, and colonization rates were related negatively to urbanization. Mink were more likely to leave stream habitat if muskrats were not present and permanent wetlands were nearby.

Conclusion

Factors interplaying across multiple scales influenced occupancy dynamics of mink in stream habitat in a highly modified landscape. Our results highlight the importance of considering both direct measures of prey availability and the spatial distribution of supplementary habitats to improve habitat-selection models for carnivores.