Detecting biodiversity refugia using remotely sensed data

Context

Habitats characterized by improved soil moisture availability can function as microrefugia (hereafter referred to as “refugia”) for the persistence of rare plant species in dry environments. Such areas are dominated by Mediterranean woody vegetation (shrubland and woodland). An analysis of these refugia elucidates their spatial distribution at the landscape scale.

Objectives

Explore whether potential refugia, detected using the upper quantile of the normalized difference vegetation index (NDVI), are related, in space and time, with the survivability of rare species in dry environments.

Methods

We used upper NDVI quantile (25%) values to predict potential refugia in nine selected areas in northern parts of Israel from 1992 to 2011. Next, we developed an index based on the ratio of density (number of observations per area) of rare species in non-refugia versus refugia patches, per site (density of rare species index, DRSI). Finally, we examined the temporal stability of the DRSI using ANOVA and Augmented Dickey–Fuller (ADF) tests.

Results

Refugia classifications and DRSI values for all areas were stable over time (1992–2011). The DRSI values were significantly lower than 1; that is, the density of rare species in the predicted refugia areas was higher than in non-refugia areas.

Conclusions

We assumed that patches of dense woody vegetation, determined by the upper 25% quantile of the NDVI, could be used to identify potential biodiversity refugia in dry environments. This assumption was validated by the DRSI results; it confirms that the local conditions in refugia support rare species.

     

Denitrification in recirculating systems: Theory and applications

Profitability of recirculating systems depends in part on the ability to manage nutrient wastes. Nitrogenous wastes in these systems can be eliminated through nitrifying and denitrifying biofilters. While nitrifying filters are incorporated in most recirculating systems according to well-established protocols, denitrifying filters are still under development. By means of denitrification, oxidized inorganic nitrogen compounds, such as nitrite and nitrate are reduced to elemental nitrogen (N₂). The process is conducted by facultative anaerobic microorganisms with electron donors derived from either organic (heterotrophic denitrification) or inorganic sources (autotrophic denitrification). In recirculating systems and traditional wastewater treatment plants, heterotrophic denitrification often is applied using external electron and carbon donors (e.g. carbohydrates, organic alcohols) or endogenous organic donors originating from the waste. In addition to nitrate removal, denitrifying organisms are associated with other processes relevant to water quality control in aquaculture systems. Denitrification raises the alkalinity and, hence, replenishes some of the inorganic carbon lost through nitrification. Organic carbon discharge from recirculating systems is reduced when endogenous carbon sources originating from the fish waste are used to fuel denitrification. In addition to the carbon cycle, denitrifiers also are associated with sulfur and phosphorus cycles in recirculating systems. Orthophosphate uptake by some denitrifiers takes place in excess of their metabolic requirements and may result in a considerable reduction of orthophosphate from the culture water. Finally, autotrophic denitrifiers may prevent the accumulation of toxic sulfide resulting from sulfate reduction in marine recirculating systems. Information on nitrate removal in recirculating systems is limited to studies with small-scale experimental systems. Packed bed reactors supplemented with external carbon sources are used most widely for nitrate removal in these systems. Although studies on the application of denitrification in freshwater and marine recirculating systems were initiated some thirty years ago, a unifying concept for the design and operation of denitrifying biofilters in recirculating systems is lacking.     

Fish spawning aggregations: where well‐placed management actions can yield big benefits for fisheries and conservation

Marine ecosystem management has traditionally been divided between fisheries management and biodiversity conservation approaches, and the merging of these disparate agendas has proven difficult. Here, we offer a pathway that can unite fishers, scientists, resource managers and conservationists towards a single vision for some areas of the ocean where small investments in management can offer disproportionately large benefits to fisheries and biodiversity conservation. Specifically, we provide a series of evidenced‐based arguments that support an urgent need to recognize fish spawning aggregations (FSAs) as a focal point for fisheries management and conservation on a global scale, with a particular emphasis placed on the protection of multispecies FSA sites. We illustrate that these sites serve as productivity hotspots – small areas of the ocean that are dictated by the interactions between physical forces and geomorphology, attract multiple species to reproduce in large numbers and support food web dynamics, ecosystem health and robust fisheries. FSAs are comparable in vulnerability, importance and magnificence to breeding aggregations of seabirds, sea turtles and whales yet they receive insufficient attention and are declining worldwide. Numerous case‐studies confirm that protected aggregations do recover to benefit fisheries through increases in fish biomass, catch rates and larval recruitment at fished sites. The small size and spatio‐temporal predictability of FSAs allow monitoring, assessment and enforcement to be scaled down while benefits of protection scale up to entire populations. Fishers intuitively understand the linkages between protecting FSAs and healthy fisheries and thus tend to support their protection.     

Botryllus schlosseri as a Unique Colonial Chordate Model for the Study and Modulation of Innate Immune Activity

Understanding the mechanisms that sustain immunological nonreactivity is essential for maintaining tissue in syngeneic and allogeneic settings, such as transplantation and pregnancy tolerance. While most transplantation rejections occur due to the adaptive immune response, the proinflammatory response of innate immunity is necessary for the activation of adaptive immunity. Botryllus schlosseri, a colonial tunicate, which is the nearest invertebrate group to the vertebrates, is devoid of T- and B-cell-based adaptive immunity. It has unique characteristics that make it a valuable model system for studying innate immunity mechanisms: (i) a natural allogeneic transplantation phenomenon that results in either fusion or rejection; (ii) whole animal regeneration and noninflammatory resorption on a weekly basis; (iii) allogeneic resorption which is comparable to human chronic rejection. Recent studies in B. schlosseri have led to the recognition of a molecular and cellular framework underlying the innate immunity loss of tolerance to allogeneic tissues. Additionally, B. schlosseri was developed as a model for studying hematopoietic stem cell (HSC) transplantation, and it provides further insights into the similarities between the HSC niches of human and B. schlosseri. In this review, we discuss why studying the molecular and cellular pathways that direct successful innate immune tolerance in B. schlosseri can provide novel insights into and potential modulations of these immune processes in humans.     

Determining Optimal Maturity of Compost Used for Land Application

A stable compost is needed in plant growth media. However, when compost is land applied, its effect is through the initiation and acceleration of microbial processes leading to the production of soil stabilizing agents.

It was proposed that there is an optimum degree of maturity of compost used for land application, a degree characterized by the reduction of the labile organic matter to a point when the material is relatively stable yet is still active enough to support an increased microbial activity in the soil.

The effect of composting time on the efficiency of municipal solid waste compost (MSWC) to improve soil structural properties, evaluated through laboratory indexes, is presented in this work. MSWC was sampled immediately following 24 hours precomposting in a Dano drum. Samples were taken throughout 60 days of windrow composting. The compost samples were mixed with a structure-impaired loess soil and incubated aerobically for 21 days. Hydraulic conductivity and residual turbidity, a measure of microaggregate stability, were measured in solutions of two SAR levels, five and 20. Compost application had a positive effect on these soil structural properties. The optimal activity was obtained for the compost sampled following seven to 14 days of windrow composting. Polysaccharide concentrations also followed a similar optimum curve. The peak concentration was found following 14 to 30 days old compost application.

The determination of the optimal maturity of composted municipal solid wastes is essential toward an efficient utilization of the compost, toward satisfaction of environmental constraints and for a cost-efficient operation of composting plants. The present preliminary study calls for more research in this field.     

Copper Oxide Nanoparticle-Coated Quartz Sand as a Catalyst for Degradation of an Organic Dye in Water

Copper oxide nanoparticles were immobilized on quartz sand and their catalytic activity for the degradation of an organic dye was investigated. The use of nanoparticles as catalysts for non photo-induced oxidation of water contaminants is relatively new. The CuO catalyst has shown promising results when suspended in free form in batch systems. Because heterogeneous catalysis is often the preferred mode of operation for application of catalytic technology, we studied the effect of immobilization of the nanoparticles on quartz sand in a flow-through system and its implication for the catalytic process. The coated sand was packed in a column and its catalytic activity for the degradation of an organic dye was investigated in a series of flow-through experiments with hydrogen peroxide as the oxidant. Control experiments with uncoated sand were also performed for comparison. The coated sand demonstrated high catalytic ability, achieving complete oxidation of the dye. During the reaction, CO₂ was produced, leading to a decrease in the water saturation in the column and reduced contact surface between the nano-CuO catalysts and the dye solution. The degradation was improved by enabling a longer residence time of the dye in the column, yielding up to 85% degradation of the dye. These results suggest that CuO nanoparticle-coated sand is an efficient catalyst for complete degradation of the organic dye.     

A field investigation of the use of the pedometer for the early detection of lameness in cattle

The efficacy of the pedometer to predict lameness earlier than the appearance of the clinical signs in a herd of dairy cows was investigated by correlating pedometric activity (PA) with clinical cases of lameness. The computer program was set to identify cows with a reduction of 5% or more in PA compared with their own previous 10 days average; these animals were then examined for clinical lameness. At the same time, every lame cow was checked to see if and when its PA was reduced. Forty-six cows showed a reduced PA; 38 cases of lameness were identified by either a reduction in PA or clinical observation; of these, 21 lame cows (45.7%) showed a reduction in PA of 5% or more, 7 to 10 days prior to the appearance of clinical signs. This cohort comprised 55.3% of the lame cows. In 92% of the lame cows identified by PA, the decrease was above 15%.     

Modulation of the innate immune response,antioxidant system and oxidative stress during acute and chronic stress in pacu (Piaractus mesopotamicus)

Fish Physiology and Biochemistry - Stress is an energy-demanding process, as well as the responses of the innate immune system, that impose a metabolic overload on cellular energy production, which...     

Diclofop‐resistant Lolium rigidum from northern Greece with cross‐resistance to ACCase inhibitors and multiple resistance to chlorsulfuron

Repeated use of ACCase‐ and ALS‐inhibiting herbicides in northern Greece has resulted in the evolution of a population of Lolium rigidum resistant to diclofop and chlorsulfuron. The biotype from Athos was highly resistant to diclofop and also exhibited differential cross‐resistance to clodinafop, fluazifop, tralkoxydim and sethoxydim. Assay of ACCase activity confirmed that the resistant biotype was tenfold more resistant to diclofop than the susceptible biotype, suggesting that the resistance mechanism could involve an altered target site. The diclofop‐resistant biotype has also exhibited multiple resistance to chlorsulfuron and the mechanism for this is unknown. Seed‐bioassay was found to be a rapid, cheap and reliable method to identify populations of L rigidum resistant to ACCase inhibitors and chlorsulfuron. Moreover, root elongation in the seed bioassay was more sensitive to ACCase inhibitors and chlorsulfuron than shoot elongation. © 2000 Society of Chemical Industry