Elemental compositions of comet 81P/Wild 2 samples collected by Stardust

We measured the elemental compositions of material from 23 particles in aerogel and from residue in seven craters in aluminum foil that was collected during passage of the Stardust spacecraft through the coma of comet 81P/Wild 2. These particles are chemically heterogeneous at the largest size scale analyzed ( approximately 180 ng). The mean elemental composition of this Wild 2 material is consistent with the CI meteorite composition, which is thought to represent the bulk composition of the solar system, for the elements Mg, Si, Mn, Fe, and Ni to 35%, and for Ca and Ti to 60%. The elements Cu, Zn, and Ga appear enriched in this Wild 2 material, which suggests that the CI meteorites may not represent the solar system composition for these moderately volatile minor elements.     

Evolutionary history of Salmonella typhi

For microbial pathogens, phylogeographic differentiation seems to be relatively common. However, the neutral population structure of Salmonella enterica serovar Typhi reflects the continued existence of ubiquitous haplotypes over millennia. In contrast, clinical use of fluoroquinolones has yielded at least 15 independent gyrA mutations within a decade and stimulated clonal expansion of haplotype H58 in Asia and Africa. Yet, antibiotic-sensitive strains and haplotypes other than H58 still persist despite selection for antibiotic resistance. Neutral evolution in Typhi appears to reflect the asymptomatic carrier state, and adaptive evolution depends on the rapid transmission of phenotypic changes through acute infections.     

Identifying obstacles and ranking common biological control research priorities for Europe to manage most economically important pests in arable,vegetable and perennial crops

EU agriculture is currently in transition from conventional crop protection to integrated pest management (IPM). Because biocontrol is a key component of IPM, many European countries recently have intensified their national efforts on biocontrol research and innovation (R&I), although such initiatives are often fragmented. The operational outputs of national efforts would benefit from closer collaboration among stakeholders via transnationally coordinated approaches, as most economically important pests are similar across Europe. This paper proposes a common European framework on biocontrol R&I. It identifies generic R&I bottlenecks and needs as well as priorities for three crop types (arable, vegetable and perennial crops). The existing gap between the market offers of biocontrol solutions and the demand of growers, the lengthy and expensive registration process for biocontrol solutions and their varying effectiveness due to variable climatic conditions and site‐specific factors across Europe are key obstacles hindering the development and adoption of biocontrol solutions in Europe. Considering arable, vegetable and perennial crops, a dozen common target pests are identified for each type of crop and ranked by order of importance at European level. Such a ranked list indicates numerous topics on which future joint transnational efforts would be justified. © 2016 Society of Chemical Industry     

Plastic response of four maritime pine (<Emphasis Type="Italic">Pinus pinaster</Emphasis> Aiton) families to controlled soil water deficit

Key message

Separating the internal (ontogenetic) and external (environmental) components of maritime pine development during controlled soil water deficit helps to highlight the plastic response. The adjusted measurements reveal significant differences between families for their plastic response for several physiology and growth traits.

Context

Soil water deficit is and will be a growing problem in some regions. Pinus pinaster Ait. is a species of commercial interest and is recognized as a drought-avoiding species. It is thus of interest to evaluate the adaptation potential of P. pinaster to soil water deficit.

Aims

This paper aims to estimate the plastic response to the variation of water availability at the family level (half-sibs).

Methods

Two-year-old P. pinaster cuttings from four families were submitted during 6 weeks to two contrasting watering regimes. The experiment started in April 2011 shortly after sprouting. The photosynthesis and stomatal conductance to water vapor were measured on 1-year-old needles. Intrinsic water-use efficiency was calculated as the ratio of photosynthesis to stomatal conductance. Radial growth, length of terminal shoot, and total height were also measured. The ontogenetic component of tree development was estimated on the well-watered trees for all the traits. Then, this development effect was eliminated from the data collected on the trees submitted to the soil water deficit in order to keep only the effect of this soil water deficit.

Results

After 6 weeks of reduced watering, the value of all adjusted traits decreased. An average plastic response to the variation of water availability was found to be significant and variable at the family level for the six adjusted variables.

Conclusion

These results suggest that there is genetic variation of phenotypic plasticity to drought in P. pinaster for several traits, including stomatal conductance, which appears to be a promising variable for future selection for resistance to drought.

     

Effects of drought on weed emergence and growth vary with the seed burial depth and presence of a cover crop

In conservation agriculture, weed seed germination could decrease with the presence of a cover crop, surface weed seed location and temporal drought in summer just after seed shedding. This study simultaneously examined the effects of a cover crop, burial depth (seed location) and hydric stress on weed emergence and early growth. It was hypothesized that drought would reduce weed emergence and the initial growth of weed seeds and that this effect would be greater when the seeds were on the soil surface and in the presence of a cover crop. Four annual weed species were chosen that are frequently found (Anisantha sterilis, Vulpia myuros, Sonchus asper, Veronica persica) and not frequently found (Alopecurus myosuroides, Poa annua, Cyanus segetum, Capsella bursa‐pastoris) in fields that implement conservation agriculture. The unburied seeds had 26% lower emergence, on average, than the buried seeds (significant for six of the eight species), hydric stress reduced emergence by 20% (for seven of the eight species) and the presence of a cover crop reduced the level of emergence by 17% (for all species). The unburied seeds with hydric stress were emerging under the “most stressful” set of factors, with a 45% decrease in emergence, compared with the seeds emerging under the “least stressful” set of factors (buried seeds without hydric stress). All the weed growth measurements (height, dry matter content and number of leaves) decreased with the presence of a cover crop. The species that are found frequently in the fields that implement conservation agriculture, compared with the species that are not frequently found in conservation agriculture fields, had higher rates of germination and a higher tolerance of hydric stress when their seeds were unburied.     

Patterns of within-stem variations in wood specific gravity and water content for five temperate tree species

? Key message

Intensive measurements of basic specific gravity and relative water content of lumens show that within-stem variations strongly depend on species and cannot be summarised through the typical patterns reported in the literature; breast height measurements are not always representative of the whole stem.

? Context

Knowledge of the distribution of wood properties within the tree is essential for understanding tree physiology as well as for biomass estimations and for assessing the quality of wood products.

? Aims

The radial and vertical variations of basic specific gravity (BSG) and relative water content of lumens (RWC _L ) were studied for five species: Quercus petraea/robur, Fagus sylvatica, Acer pseudoplatanus, Abies alba and Pseudotsuga menziesii. The observations were compared with typical patterns of variations reported in the literature.

? Methods

Wood discs were sampled regularly along tree stems and X-rayed in their fresh and oven-dry states.

? Results

At breast height, BSG was found to clearly increase radially (pith to bark) for two species and to decrease for one species. For F. sylvatica and A. alba, the radial variations of BSG were rather U-shaped, with in particular inner wood areas showing respectively lower and higher BSG than the corresponding mature wood. RWC _L increased generally from inner to outer area but wet sapwood was clearly distinguishable only for the coniferous species. Vertical variations of BSG and RWC _L were strongly dependant on the species with usually non-linear patterns.

? Conclusion

The observed variations of BSG were only partially in agreement with the reported typical radial patterns. Despite the vertical variations, the mean BSG of a cross-section at breast height appeared to be a good estimator of the mean BSG of the whole stem (although the difference was statistically significant for coniferous species), whereas breast height measurement of RWC _L was not representative of the whole stem.

     

Comparative Study on the Performance of Three Detection Methods for the Quantification of Pacific Ciguatoxins in French Polynesian Strains of Gambierdiscus polynesiensis

Gambierdiscus and Fukuyoa dinoflagellates produce a suite of secondary metabolites, including ciguatoxins (CTXs), which bioaccumulate and are further biotransformed in fish and marine invertebrates, causing ciguatera poisoning when consumed by humans. This study is the first to compare the performance of the fluorescent receptor binding assay (fRBA), neuroblastoma cell-based assay (CBA-N2a), and liquid chromatography tandem mass spectrometry (LC-MS/MS) for the quantitative estimation of CTX contents in 30 samples, obtained from four French Polynesian strains of Gambierdiscus polynesiensis. fRBA was applied to Gambierdiscus matrix for the first time, and several parameters of the fRBA protocol were refined. Following liquid/liquid partitioning to separate CTXs from other algal compounds, the variability of CTX contents was estimated using these three methods in three independent experiments. All three assays were significantly correlated with each other, with the highest correlation coefficient (r² = 0.841) found between fRBA and LC-MS/MS. The CBA-N2a was more sensitive than LC-MS/MS and fRBA, with all assays showing good repeatability. The combined use of fRBA and/or CBA-N2a for screening purposes and LC-MS/MS for confirmation purposes allows for efficient CTX evaluation in Gambierdiscus. These findings, which support future collaborative studies for the inter-laboratory validation of CTX detection methods, will help improve ciguatera risk assessment and management.     

Structural Characterization and Rheological and Antioxidant Properties of Novel Polysaccharide from Calcareous Red Seaweed

A novel sulfated xylogalactan (JASX) was extracted and purified from the rhodophyceae Jania adhaerens. JASX was characterized by chromatography (GC/MS-EI and SEC/MALLS) and spectroscopy (ATR-FTIR and ¹H/¹³C NMR) techniques. Results showed that JASX was constituted by repeating units of (→3)-β-d-Galp-(1,4)-3,6-α-l-AnGalp-(1→)_n and (→3)-β-d-Galp-(1,4)-α-l-Galp-(1→)_n substituted on O-2 and O-3 of the α-(1,4)-l-Galp units by methoxy and/or sulfate groups but also on O-6 of the β-(1,3)-d-Galp mainly by β-xylosyl side chains and less by methoxy and/or sulfate groups. The M_w, M_n, Đ, [η] and C* of JASX were respectively 600 and 160 kDa, 3.7, 102 mL.g⁻¹ and 7.0 g.L⁻¹. JASX exhibited pseudoplastic behavior influenced by temperature and monovalent salts and highly correlated to the power-law model and the Arrhenius relationship. JASX presented thixotropic characteristics, a gel-like viscoelastic behavior and a great viscoelasticity character. JASX showed important antioxidant activities, outlining its potential as a natural additive to produce functional foods.     

Quantification of Common Wheat Adulteration of Durum Wheat Pasta Using Real‐Time Quantitative Polymerase Chain Reaction (PCR)

Common wheat adulteration of durum wheat pasta was quantified using real‐time duplex polymerase chain reaction (PCR). The total DNA content of pasta was determined by amplifying part of a wheat gene encoding a lipid transfer protein, and common wheat DNA was quantified by amplifying part of the puroindoline‐b gene. Under the conditions defined by this study, for pasta with a theoretical adulteration of 3%, the experimentally determined mean value was 2.6–3.4%, depending on drying temperature. Pure durum wheat pastas were distinguished from adulterated pastas without ambiguity. This study demonstrates the feasibility of using real‐time duplex PCR to quantify common wheat adulteration of pasta dried at high temperature, quantification that was impossible with the French official peroxidase‐marker method.