Development and evaluation of pyramiding lines carrying early or late heading QTLs in the indica rice cultivar ‘IR64’

The heading date is an important trait for determining regional and climatic adaptability in rice. To expand the adaptability of the indica rice cultivar ‘IR64’, we pyramided multiple early or late heading quantitative trait locus (QTLs) in the ‘IR64’ genetic background by crossing previously developed near-isogenic lines (NILs) with a single QTL for early or late heading. The effects of pyramiding QTLs were observed in three different climatic zones of the Philippines, Madagascar, and Japan. The early heading pyramiding lines (PYLs) headed 6.2 to 12.8 days earlier than ‘IR64’ while the late heading PYLs headed 18.8 to 27.1 days later than ‘IR64’. The PYLs tended to produce low grain yield compared to ‘IR64’. The low yield was not improved by combining SPIKE, which is a QTL that increases the number of spikelets per panicle. Conversely, ‘IR64-PYL(7+10)’ carrying Hd5 and Hd1 headed earlier, produced more tillers, and more panicles per m² than ‘IR64’, and mitigated the yield decrease in early heading. These results suggest that the effects of pyramided QTLs on heading date were consistent across various environments and PYLs could be used to enhance the adaptation of ‘IR64’ in other rice growing environments.     

Individual-based modeling highlights the importance of mortality and landscape structure in measures of functional connectivity

Landscape Ecology - Functional landscape connectivity is vital for the conservation of wildlife species. Landscape connectivity models often overlook factors such as mortality and asymmetry in...     

SnToxA,SnTox1, and SnTox3 originated in Parastagonospora nodorum in the Fertile Crescent

The centre of origin of the globally distributed wheat pathogen Parastagonospora nodorum has remained uncertain because only a small number of isolates from the Fertile Crescent were included in earlier population genetic and phylogeographic studies. We isolated and genetically analysed 193 P. nodorum strains from three naturally infected wheat fields distributed across Iran using 11 neutral microsatellite loci. Compared to previous studies that included populations from North America, Europe, Africa, Australia, and China, the populations from Iran had the highest genetic diversity globally and also exhibited greater population structure over smaller spatial scales, patterns typically associated with the centre of origin of a species. Genes encoding the necrotrophic effectors SnToxA, SnTox1, and SnTox3 were found at a high frequency in the Iranian population. By sequencing 96 randomly chosen Iranian strains, we detected new alleles for all three effector genes. Analysis of allele diversity showed that all three effector genes had higher diversity in Iran than in any population included in previous studies, with Iran acting as a hub for the effector diversity that was found in other global populations. Taken together, these findings support the hypothesis that P. nodorum originated either within or nearby the Fertile Crescent with a genome that already encoded all three necrotrophic effectors during its emergence as a pathogen on wheat. Our findings also suggest that P. nodorum was the original source of the ToxA genes discovered in the wheat pathogens Phaeosphaeria avenaria f. sp. tritici 1, Pyrenophora tritici-repentis, and Bipolaris sorokiniana.     

Two-year development of southern pine seedlings and associated vegetation following spray-and-burn site preparation with imazapyr alone or in mixture with other herbicides

Eight herbicide combinations containing imazapyr alone or in mixture with glyphosate, triclopyr, or picloram+2,4-D were applied July–August 1991 at each of three upland sites in the southeastern U.S., with or without a subsequent broadcast burn in September. Seedlings of loblolly (Pinus taeda L.) or slash (P. elliottii Engelm. var. elliottii) pine were planted that winter. Second-year (August 1993) vegetation responses indicate that broadcast burning, in combination with herbicides, was associated with increased abundances of grasses, forbs, and shrubs and decreased abundances of vines and hardwood trees. In the presence of burning, imazapyr-in-mixture treatments were associated with a high abundance of grass (53% cover) and a mean size of pines less than that of seedlings growing in imazapyr-alone treatments. In the absence of burning, imazapyr-alone treatments were associated with a high abundance of blackberry (21% cover), an average height of hardwoods (131 cm) exceeding that of pines (71 cm), and a mean size of pines less than that of trees growing in imazapyr-in-mixture treatments. Hardwood height in the absence of burning was less when imazapyr was combined with glyphosate (75 cm) than with triclopyr (102 cm). Regardless of the presence or absence of burning, size of pines and abundance of shrubs and hardwoods did not differ between imazapyr rates of 0.56 and 0.84 kg acid equivalent/ha or among herbicides applied in mixture with imazapyr.     

Nitrogen and fine root length dynamics in a tropical agroforestry system with periodically pruned Erythrina poeppigiana

The effect of pruning all branches (complete pruning) or retaining one branch (partial pruning) on the dynamics of nitrogen cycling in aboveground biomass, nitrogen supplying power of an amended Eutric Cambisol, and fine root length, was studied in an Erythrina poeppigiana (Walp.) O.F. Cook—tomato (Lycopersicon esculentum Mill.) alley cropping practice in Turrialba, Costa Rica during 1999–2000. Over the 1 year pruning cycle, in which trees were completely or partially pruned four times, respective aboveground biomass production was 4.4 Mg or 7 Mg ha⁻¹ (2-year-old trees) and 5.5 Mg or 9 Mg ha⁻¹ (8-year-old trees); N cycled in aboveground biomass was 123 kg or 187 kg ha⁻¹ (2-year-old trees) and 160 kg or 256 kg N ha⁻¹ (8-year-old trees); mean fine root length was 489 or 821 m (2-year-old-trees), 184 or 364 m per tree (8-year-old-trees). Pruning intensity did not significantly affect net N mineralisation and net nitrification rates during the tomato-cropping season. For the tomato crop, pre-plant mean net N mineralisation rate of 2.5 mg N kg⁻¹ soil day⁻¹ was significantly lower than 16.7 or 11.6 mg N kg⁻¹ soil day⁻¹ at the end of vegetative development and flowering, respectively. Mean net nitrification rates of 3.5, and 4.3 mg N kg⁻¹ soil day⁻¹, at pre-plant and end of vegetative development, respectively, were significantly higher than 0.3 mg N kg⁻¹ soil day⁻¹ at end of flowering. In humid tropical low-input agroforestry practices that depend on organic inputs from trees for crop nutrition, retention of a branch on the pruned tree stump appears to be a good alternative to removal of all branches for reducing N losses through higher N cycling in aboveground biomass, and for conserving fine root length for higher N uptake, although it might enhance competition for associated crops.     

Molecular mimicry regulates ABA signaling by SnRK2 kinases and PP2C phosphatases

Abscisic acid (ABA) is an essential hormone for plants to survive environmental stresses. At the center of the ABA signaling network is a subfamily of type 2C protein phosphatases (PP2Cs), which form exclusive interactions with ABA receptors and subfamily 2 Snfl-related kinase (SnRK2s). Here, we report a SnRK2-PP2C complex structure, which reveals marked similarity in PP2C recognition by SnRK2 and ABA receptors. In the complex, the kinase activation loop docks into the active site of PP2C, while the conserved ABA-sensing tryptophan of PP2C inserts into the kinase catalytic cleft, thus mimicking receptor-PP2C interactions. These structural results provide a simple mechanism that directly couples ABA binding to SnRK2 kinase activation and highlight a new paradigm of kinase-phosphatase regulation through mutual packing of their catalytic sites.     

Baker's Yeast as a Potential Substitute for Live Algae in Aquaculture Diets: Artemia as a Case Study

In this study baker's yeast was evaluated as a substitute for live Dunuliella tertiolecta algae in the culture of the brine shrimp Artemia . Consumption of fresh baker's yeast resulted in poor growth and survival of brine shrimp. However, the nutritional value of the yeast sigaificantly improved after complete removal of the yeast cell wall by enzymatic treatment. Baker's yeast was also made digestible for Artemia by simple chemical treatment which did not reduce rigidity of the yeast cell. The external mannoprotein layer of the yeast cell wall is probably the major barrier to digestion by Artemia . Chemically treated baker's yeast offers promising possibilities as a substitute for algal feeds in aquaculture.     

Effect of carbon/nitrogen ratio manipulation in feed supplements on Artemia production and water quality in solar salt ponds in the Mekong Delta,Vietnam

The effect of carbon/nitrogen (C/N) ratio manipulation in feed supplements on Artemia production and water quality was investigated in solar salt ponds in the Mekong Delta, Vietnam. It was assumed that development of bacterial bioflocs through C/N manipulation would improve Artemia production and water quality as demonstrated in freshwater and marine aquaculture. Twelve ponds were used for three treatments and the control, in triplicates. Green water (GW) was supplied to all ponds, with the standard Vietnamese procedure of supplying GW and chicken manure (CM) as the control (C/N 1.8). Treatment ponds were supplemented with tapioca (TAP) as carbon source, combined with either CM, pig manure (PM) or rice bran (RB), with C/N ratios of 7.4, 10.5 or 20.1 respectively. After 6 weeks of culture, no single treatment supported both improved water quality and enhanced Artemia production. Overall, improved water quality was observed at C/N 20.1 and higher Artemia production at C/N 7.4. Although external field factors could have interfered with the set‐up, this is the first study on the effect of C/N manipulation in feed supplements in Artemia pond production systems and provides the basis for development of bacterial bioflocs as a technology to improve water quality and Artemia production.     

The effect of different HUFA enrichment emulsions on the nutritional value of rotifers (Brachionus plicatilis) fed to larval haddock (Melanogrammus aeglefinus).

A feeding study was conducted in the winter 2001 to determine the effects of feeding rotifers (Brachionus plicatilis) enriched with various levels of essential fatty acids on the growth and survival of haddock larvae (Melanogrammus aeglefinus). Rotifer enrichment treatments were: 1) mixed algae, 2) high DHA (docosahexaenoic acid, 22:6n-3), 3) high DHA and EPA (eicosapentaenoic acid, 20:5n-3), and 4) DHA, EPA, and AA (arachidonic acid, 20:4n-6). Larvae were fed rotifers enriched with the different treatments from days 1 to 16 post-hatch. From day 17 until 25 all treatment groups were fed rotifers reared on mixed algae and then weaned onto the International Council for Exploration of the SEA (ICES) Standard Reference Weaning diet (http://allserv.rug.ac.t/aquaculture/rend/rend.htm) over a five day period. The experiment was terminated on day 41 post-hatch. The enrichment treatments affected the fatty acid composition of the rotifers and correlated with the accumulation of these fatty acids in the haddock larvae. However, no significant differences in larval growth or survival to 40 days post hatch were detected, suggesting that all treatments provided the minimal essential fatty acid requirements for haddock.     

Effects of no‐take area size and age of marine protected areas on fisheries yields: a meta‐analytical approach

Marine protected areas (MPAs) are often promoted as tools for biodiversity conservation as well as for fisheries management. Despite increasing evidence of their usefulness, questions remain regarding the optimal design of MPAs, in particular concerning their function as fisheries management tools, for which empirical studies are still lacking. Using 28 data sets from seven MPAs in Southern Europe, we developed a meta‐analytical approach to investigate the effects of protection on adjacent fisheries and asking how these effects are influenced by MPA size and age. Southern European MPAs showed clear effects on the surrounding fisheries, on the ‘catch per unit effort’ (CPUE) of target species, but especially on the CPUE of the marketable catch. These effects depended on the time of protection and on the size of the no‐take area. CPUE of both target species and the marketable catch increased gradually by 2–4% per year over a long time period (at least 30 years). The influence of the size of the no‐take area appeared to be more complex. The catch rates of the entire fishery in and around the MPA were higher when the no‐take areas were smaller. Conversely, catch rates of selected fisheries that were expected to benefit most from protection increased when the no‐take area was larger. Our results emphasize the importance of MPA size on its export functions and suggest that an adequate, often extended, time frame be used for the management and the evaluation of effectiveness of MPAs.