Genetic diversity of rhizobia associated with alfalfa in Serbian soils

We have evaluated the genetic diversity and phylogeny of alfalfa rhizobia, originating from different types of soils in Serbia and their ability to establish an effective symbiosis with alfalfa (Medicago sativa L.). A collection of 65 strains isolated from root nodules of alfalfa were characterized by rep-PCR analysis, partial and complete 16S rDNA gene and recA gene sequencing, as well as atpD gene sequencing and DNA–DNA hybridizations. The results of the sequence analyses revealed that Sinorhizobium meliloti is the dominant species in alfalfa nodules. Only one strain was identified as Sinorhizobium medicae, two strains as Rhizobium tibeticum and one strain as Rhizobium sp. Despite the fact that the majority of strains were identified as S. meliloti, a high genetic diversity at strain level was detected. Almost all isolates shared the ability to nodulate and fix nitrogen with M. sativa, except 11 of them, which were incapable of fixing nitrogen with this species. About 50% of the isolates showed values of symbiotic effectiveness (SE) above 50%, while 10% of the strains were highly effective with SE values above 70%. Some of the strains which were highly effective in nitrogen fixation at the same time could intensively solubilize phosphates, offering a possibility for multipurpose inoculum development. This was the first genetic study of rhizobia isolated from this region and also the first report of natural presence of R. tibeticum in root nodules of M. sativa.     

Key soil and topographic properties to delineate potential management classes for precision agriculture in the European loess area

Recent advances in on-the-go soil sensing, terrain modelling and yield mapping have made available large quantities of information about the within-field variability of soil and crop properties. But the selection of the key variables for an identification of management zones, required for precision agriculture, is not straightforward. To investigate a procedure for this selection, an 8 ha agricultural field in the Loess belt of Belgium was considered for this study. The available information consisted of: (i) top- and subsoil samples taken at 110 locations, on which soil properties: textural fractions, organic carbon (OC), CaCO₃ and pH were analysed, (ii) soil apparent electrical conductivity (EC_a) obtained through an electromagnetic induction based sensor, and (iii) wetness index, stream power index and steepest slope angle derived from a detailed digital elevation model (DEM). A principal component analysis, involving 12 soil and topographic properties and two EC_a variables, identified three components explaining 67.4% of the total variability. These three components were best represented by pH, EC_a that strongly associated with texture and OC. However, OC was closely related to some more readily obtainable topographic properties, and therefore elevation was preferred. A fuzzy k-means classification of these three variables produced four potential management classes. Three-year average standardized yield maps of grain and straw showed productivity differences across these classes, but mainly linked to their landscape position. In the loess area with complex soil-landscape interactions pH, EC_a and elevation can be considered as key properties to delineate potential management classes.     

The Level II aggregated forest soil condition database links soil physicochemical and hydraulic properties with long-term observations of forest condition in Europe

Key message

Aggregated, consolidated, and derived soil physicochemical data of 286 ICP Forests Level II plots were completed with soil hydraulic properties for integrated use with forest monitoring data. Database access should be requested at http://icp-forests.net . Metadata associated available at https://metadata-afs.nancy.inra.fr/geonetwork/apps/georchestra/?uuid=153e599e-6624-4e2b-b862-8124386ea9cd&hl=eng

Context

The ICP Forests database is one of the most comprehensive forest ecosystem datasets in Europe and contains the accumulated results of more than two decades of harmonised forest monitoring all over Europe.

Aims

The aim of this paper is to share knowledge on the ICP Forests Level II soil data for broader use among forest scientists.

Methods

After standard analysis, quality checks, aggregation, and calculation of derived variables (e.g. nutrient stocks, base saturation, C:N ratio, and water retention parameters), data have been gathered into a static database (AFSCDB.LII.2.2), which will be updated to new versions as soon as new measurements become available.

Results

The database provides a basis for the combined evaluation of up to 130 unique soil variables of 286 plots with dynamic data on tree growth, ground vegetation, foliar chemistry, crown condition, tree phenology, leaf area index, ozone injury, litterfall, soil solution chemistry, deposition, ambient air quality, and meteorological data assessed on the same plots.

Conclusion

The unprecedented comprehensiveness and level of detail in this newly aggregated database may overcome existing restrictions so far impeding the realisation of large-scale forest ecosystem studies in Europe.

     

Integrated pest management of Tuta absoluta: practical implementations across different world regions

Journal of Pest Science - The South American tomato pinworm, Tuta absoluta (Meyrick) (Lepidoptera: Gelechiidae), has invaded most Afro-Eurasian countries and is threatening worldwide tomato...     

Germination and seedling growth of <Emphasis Type="Italic">Dimorphandra jorgei</Emphasis> MF Silva and <Emphasis Type="Italic">Swartzia macrostachya</Emphasis> Benth. var. <Emphasis Type="Italic">riedelii</Emphasis> Cowan

Dimorphandra jorgei MF Silva (Caesalpinaceae) and Swartzia macrostachya Benth. var. riedelii Cowan (Fabaceae) are tree species from the southern Bahian Atlantic Forest, identified for the restoration of degraded areas. The objective of this research is to study their seed germination and seedling growth to develop simple methods for seedling production in small scale nurseries. Because the species have distinct dormancy and germination characteristics, the seeds were submitted to different treatments. D. jorgei seeds were immersed in hot water, scarified and stored for 12 weeks in the laboratory environment (25°C). S. macrostachya seeds were submitted to different combinations of drying and storage in the laboratory environment or refrigerator (4°C). Seedlings were submitted to two light treatments for 3 months: partial shade (52% of full sun) and full shade (12% of full sun). In D. jorgei, the highest germination occurred for scarified seeds (87%) and for seeds stored for 12 weeks and then scarified (69%). In S. macrostachya the undried control seeds had the highest germination, followed by that of the refrigeration storage treatment, without predrying (99% and 97%, respectively). The average values for the growth parameters were greater in full shade for D. jorgei, while S. macrostachya seedlings showed greater growth rates in partial shade. Two months growth is recommended before D. jorgei seedlings are of the sufficient size and leaf number for field planting. On the other hand, a period of 4 months is recommended for S. macrostachya, due to its relatively slow growth.     

Transmission of resistance to common scab from the diploid to the tetraploid level via 4x-2x crosses in potatoes

Summary Diploid potato clones selected for their reaction to common scab and their ability to produce 2n male gametes were used in a series of crosses to a susceptible tetraploid female parent (cv. Shepody). In addition, two tetraploid clones were also selected for their reaction to common scab and crossed with Shepody as a female parent. Results indicated that resistance to common scab can be effectively transmitted from the diploid to the tetraploid level via 4x-2x crosses. Diploid parents producing 2n pollen via either first division or second division restitution can be used to transmit scab resistance. A relatively small proportion of resistant individuals could be recovered from susceptible x susceptible crosses in both 4x-2x and 4x-4x combinations. The data support a previously developed hypothesis that scab resistance is relatively simply inherited.     

Field resistance to bacterial canker in some cherry seedling populations

In 9–13 year old cherry seedling populations, totalling 1,033 individuals, a preliminary selection was made in 1963, for field resistance to bacterial canker (Pseudomonas syringae van Hall).The field resistance of the three cherry species used, P. avium, P. cerasus and P. avium × P. cerasus, has shown to be low, high and very high, respectively.     

Feature extraction and recognition technique for human pulse signals

In Chinese traditional medicine, the pulse signal plays an important role for diagnosis. To investigate the effective technique for identifying heroin druggers through the pulse signal, the feature extraction algorithm based on the biocepstrum and the third-order cepstrum entropy of the pulse signal is studied. On the basis of concise and rigorous discussion for the algorithm, the biocepstrum-based diagonal slice components are estimated for human pulse signals of 20 heroin druggers and 20 healthy normal subjects. The magnitude of the sample value of diagonal slice at m=n=1 and the third-order cepstrum entropy of magnitudes of sample values of the diagonal slice within a particular region are used as two feature parameters for every human pulse signal to form a feature vector. A classifier based on the criterion of squared Mahalanobis distance is successfully designed. Applying the designed classifier to 40 feature vectors, the correct identification rate reaches 87.5%. The research result shows that the method of the feature extraction and classifier design presented in is valuable for identifying the human pulse signals of heroin druggers.     

Variation for plant characters and for performance of softwood cuttings of Rosa canina ‘Inermis’ seedlings

Summary Thirty, one-season-old Rosa canina Inermis seedlings (8–12 mm in diameter) were grown in the greenhouse. After 5 months, single-node softwood cuttings were made of each plant. Analysis of variance demonstrated marked differences between the internode length, number of leaflets per leaf and the leaf area of the original seedling, and between the time of axillary bud-break, axillary sprout length and weight of adventitious roots of their 23-day-old cuttings. Clonal root weight of cuttings was highly significantly correlated with: number of leaflets per leaf (r=–0.65), leaf area (r=+0.65), and days to axillary bud-break (r=+0.62). The origin of heterogeneity among Inermis seedling rootstocks, its probable effect on the flower production of cut roses and its possible use in the selection for clonal rootstocks are discussed.