Gastric dilation and air sacculitis in farmed chinook salmon, Oncorhynchus tshawytscha (Walbaum)

A syndrome affecting cultured chinook salmon, Oncorhynchus tshawytscha (Walbaum), characterized by distended abdomens, gastric dilation, air sacculitis (GDAS), increased feed conversion rates and increased mortality has been recognized in New Zealand. Affected fish were most obvious in sea cages but were also present in fresh water. Mortality rates associated with this condition were highest in late summer and approached 6% per month. A dilated and flaccid stomach, without visible rugal folds containing copious oil, watery fluid or undigested feed was typical. Gastric mucosal ulceration or inflammation were not present. The air sacculitis consisted of a thickened, dilated bladder with a mixed mucosal inflammatory infiltrate and a luminal exudate associated with large numbers of morphologically diverse bacteria. Gastric dilation or air sacculitis occurred alone or together in the same fish. In a group of 20 subclinically affected fish with or without gastric dilation, there were no significant differences in weight, length, serum osmolality, sodium, total protein or packed cell volume. Twenty-three severely affected fish had significantly ( P  < 0.05) higher serum osmolality but similar sodium and total protein to that of clinically normal fish.     

Salmonella Brandenburg--emergence of a variant strain on a sheep farm in the South Island of New Zealand

Salmonella Brandenburg was initially diagnosed in New Zealand in an aborted ewe from a Merino flock in mid-Canterbury in1996. The following year, the disease occurred on farms in mid-Canterbury and on one farm near Winton in Southland (Bailey1997). Since then, this bacterium has caused widespread abortion and deaths in pregnant ewes in Southland, coastal Otago and south- and mid-Canterbury. In cattle, the same organism has caused diarrhoea and dysentery in calves and adult cattle, and abortions and deaths in first-calving cows and, to a lesser extent, in second-calving and older cows. Salmonella Brandenburg has also caused diarrhoea and fetal deaths in dogs, and diarrhoea and deaths in foals. The outbreak strain has been extensively studied using pulsed-field gel electrophoresis (PFGE). All isolates tested to date have had an indistinguishable molecular pattern with the exception of a single isolate from a sheep-yard dust sample recovered in October 2000 that is the subject of this report. The molecular pattern of the variant strain differed from that of the epidemic strain by the absence of one high molecular weight band and the addition of three lower molecular weight bands.     

Hydrologic Vulnerability of Sagebrush Steppe Following Pinyon and Juniper Encroachment

Woodland encroachment on United States rangelands has altered the structure and function of shrub steppe ecosystems. The potential community structure is one where trees dominate, shrub and herbaceous species decline, and rock cover and bare soil area increase and become more interconnected. Research from the Desert Southwest United States has demonstrated areas under tree canopies effectively store water and soil resources, whereas areas between canopies (intercanopy) generate significantly more runoff and erosion. We investigated these relationships and the impacts of tree encroachment on runoff and erosion processes at two woodland sites in the Intermountain West, USA. Rainfall simulation and concentrated flow methodologies were employed to measure infiltration, runoff, and erosion from intercanopy and canopy areas at small-plot (0.5 m²) and large-plot (13 m²) scales. Soil water repellency and vegetative and ground cover factors that influence runoff and erosion were quantified. Runoff and erosion from rainsplash, sheet flow, and concentrated flow processes were significantly greater from intercanopy than canopy areas across small- and large-plot scales, and site-specific erodibility differences were observed. Runoff and erosion were primarily dictated by the type and quantity of ground cover. Litter offered protection from rainsplash effects, provided rainfall storage, mitigated soil water repellency impacts on infiltration, and contributed to aggregate stability. Runoff and erosion increased exponentially (r² = 0.75 and 0.64) where bare soil and rock cover exceeded 50%. Sediment yield was strongly correlated (r² = 0.87) with runoff and increased linearly where runoff exceeded 20 mm·h^?1. Measured runoff and erosion rates suggest tree canopies represent areas of hydrologic stability, whereas intercanopy areas are vulnerable to runoff and erosion. Results indicate the overall hydrologic vulnerability of sagebrush steppe following woodland encroachment depends on the potential influence of tree dominance on bare intercanopy expanse and connectivity and the potential erodibility of intercanopy areas.     

Growth response of broilers to spray-dried plasma in pelleted or expanded feed processed at high temperature

A series of 4 experiments evaluated effects of mash conditioning temperature from a pellet mill or expander on performance of broilers fed pelleted diets containing spray-dried plasma (SDP). All experiments utilized Ross x Ross 308 male broilers randomly assigned to their respective treatments (6 or 10 broilers/pen and 8 or 10 pens/treatment). Treatments in Exp. 1 consisted of a control (0% SDP), SDP coated postpelleting, or SDP blended into the meal prepelleting. Experiment 2 and 3 included the same 3 treatments as in Exp. 1 but with additional treatments of SDP blended into the meal and conditioned at 90 or 95 degrees C before pelleting. In Exp. 4, treatments consisted of a control (0% SDP) or SDP blended into the meal and pelleted (85 degrees C conditioning temperature) or expanded (149 degrees C final effective temperature) and then pelleted. Corn-soybean meal-based diets were formulated to be equal in lysine and ME in all experiments. Pelleted diets were conditioned for 15 s at 85 degrees C, and expanded diets were conditioned at 95 degrees C, 29.7 MJ/t, 13.95 kg/cm2 cone pressure, exit temperature of 149 degrees C, and then pelleted through a 4 x 32-mm die. In Exp. 1, ADG and feed intake were improved (P < 0.05) for broilers fed SDP from d 1 to 28 of age, with greater BW at d 42. In Exp. 2, both in early (d 1 to 28 of age) phases, and overall (d 1 to 42 of age), broilers fed SDP had improved (P < 0.05) gain and efficiency. In Exp. 3, ADG, feed intake, efficiency of gain, and BW were improved (P < 0.01) for broilers fed SDP from d 1 to 21 of age, regardless of conditioning temperature. In Exp. 4, broilers fed SDP had improved (P < 0.05) gain, BW, and feed intake regardless of processing method. Overall, the results of all of the experiments demonstrated that pellet conditioning temperature from 85 to 95 degrees C and expander temperatures to 149 degrees C did not impair the positive growth effects of SDP in pelleted or expanded broiler feed.     

Targeted identification of genomic regions using TAGdb

Background

The introduction of second generation sequencing technology has enabled the cost effective sequencing of genomes and the identification of large numbers of genes and gene promoters. However, the assembly of DNA sequences to create a representation of the complete genome sequence remains costly, especially for the larger and more complex plant genomes.

Results

We have developed an online database, TAGdb, that enables researchers to identify paired read sequences that share identity with a submitted query sequence. These tags can be used to design oligonucleotide primers for the PCR amplification of the region in the target genome.

Conclusions

The ability to produce large numbers of paired read genome tags using second generation sequencing provides a cost effective method for the identification of genes and promoters in large, complex or orphan species without the need for whole genome assembly.     

Mineral acquisition by arbuscular mycorrhizal plants

Arbuscular mycorrhizal fungi (AMF) benefit plants by allowing them to grow and produce in relatively harsh mineral stress environments. This has been attributed extensively to ability of AMF to expand the volume of soil for which mineral nutrients are made available to plants compared to what roots themselves would contact. This article reviews the effects of AMF on enhancing/reducing acquisition of phosphorus (P), nitrogen (N), sulfur (S), boron (B), potassium (K), calcium (Ca), magnesium (Mg), sodium (Na), zinc (Zn), copper (Cu), manganese (Mn), iron (Fe), aluminum (Al), silicon (Si), and some trace elements in plants. The nutrients enhanced most in host plants grown in many soils (e.g., high and low soil pH) are P, N, Zn, and Cu, but K, Ca, and Mg are enhanced when plants are grown in acidic soils. Many AMF have also the ability to ameliorate Al and Mn toxicities for plants are grown in acidic soil.