Structure and species composition of novel forests dominated by an introduced species in northcentral Puerto Rico

The African tulip tree, Spathodea campanulata Beauv., is an introduced species forming novel forest types in Puerto Rico. These forests develop naturally after deforestation, agricultural use and land abandonment, and there are many questions as to their ecological characteristics. We sampled structure and species composition of large, small, and juvenile trees (≥10, ≥2.5 to <10, and <2.5 cm diameter at breast height, respectively) in nine secondary forests dominated by S. campanulata on alluvial, karst, and volcanic substrates in northcentral Puerto Rico. No differences were found in S. campanulata forest structure between substrates. Of a total of 79 species found, 17 were introduced. Forests on karst and alluvium had the highest and lowest global species richness, respectively. Species richness increased from large to small to juvenile trees in most sites, but more so on karst. The percentage of introduced species was inversely related to species richness of tree size classes on all substrate types. The dominance of S. campanulata in the large tree size class was highest and lowest in alluvial and volcanic sites, respectively, and decreased from large to small to juvenile trees on all substrate types. Species richness of S. campanulata forests is lower than that of native forests on equivalent substrates. Although land use history affects composition, the juvenile tree species established in S. campanulata forests seems to correspond to the geological substrate were sites are found. This study shows S. campanulata restores forest structure and native tree species on abandoned agriculture and grazing lands in Puerto Rico. Management of these novel forests should consider them as resources were natural processes have the potential of making them more diverse.     

Identification of risk factors associated with highly pathogenic avian influenza H5N1 virus infection in poultry farms, in Nigeria during the epidemic of 2006-2007

We conducted a matched case-control study to evaluate risk factors for infection with highly pathogenic avian influenza (HPAI) H5N1 virus in poultry farms during the epidemic of 2006-2007 in Nigeria. Epidemiologic data were collected through the use of a questionnaire from 32 case farms and 83 control farms. The frequency of investigated exposure factors was compared between case and control farms by using conditional logistic regression analysis. In the multivariable analysis, the variables for (i) receiving visitors on farm premises (odds ratio [OR]=8.32; 95% confidence interval [CI]=1.87, 36.97; P<0.01), (ii) purchased live poultry/products (OR=11.91; 95% CI=3.11-45.59; P<0.01), and (iii) farm workers live outside the premises (OR=8.98; 95% CI=1.97, 40.77; P<0.01) were identified as risk factors for HPAI in poultry farms. Improving farm hygiene and biosecurity should help reduce the risk for influenza (H5N1) infection in poultry farms in Nigeria.     

Irrigation in Northern Mesopotamia: Water for the Assyrian Capitals (12th–7th centuries BC)

Hydraulic engineering projects in ancientAssyria (nowadays, northern Iraq) have beenwitnessed for many centuries, from the end ofthe second to the middle of the firstmillennium BC. The use of both philologicaland archaeological evidence enables us toreconstruct the different stages of thehydraulic enterprises in Assyria, as well asthe specific terminology used in this fieldof technological knowledge. The Assyriankings changed the location of their capitalseveral times, either by founding newcities or by converting older settlementsinto royal residences. Establishment ofthese new capitals included theconstruction of canal systems, whichbrought water drawn from rivers or thesurrounding mountains to irrigate theirfields and gardens. This paper focuseson these projects and reviews their mainfeatures. It also points out themethodological difficulties encounteredwhen using the available sources.     

Emerging forests on abandoned land: Puerto Rico’s new forests

The species composition of forests change continuously as the earth’s biota evolves and adjusts to environmental change. Humans are accelerating the rate of species turnover by moving species around the planet and dramatically changing environmental conditions. Our focus is on new forests in Puerto Rico that emerge naturally on abandoned lands previously converted to agriculture and degraded. These forest stands have combinations of species that are new to the island’s landscapes. New forests exhibit high species dominance during forest establishment, which includes dominance by alien tree species. These alien tree species establish and maintain forest cover, which may facilitate regeneration of native tree species. Landscape analysis and literature review revealed that these emerging stands are highly fragmented (60% were <1 ha in 1991), function as refugia for native organisms, and at 60–80 years old have similar species richness and structural features as native stands of similar age. However, the island’s new forests exhibit important differences from mature native forests on unconverted forestlands. New forests have fewer endemic species and fewer large trees (≥55 cm dbh) than mature native forests; they have higher soil bulk density and lower soil carbon and litter stocks; and they accumulate aboveground biomass, basal area, and soil carbon more slowly than native forests of similar age. We suggest that new forests will become increasingly prevalent in the biosphere in response to novel environmental conditions introduced to the planet by humans.     

Acculturation, economics and food insecurity among refugees resettled in the USA: a case study of West African refugees

OBJECTIVES: To assess the occurrence and severity of food insecurity, and examine associations between food insecurity and measures of socio-economic status and indicators of acculturation. DESIGN: Structured interviews among a non-probability sample of West African refugees at baseline and 6 months' follow-up.Setting Mid-sized city in north-eastern USA. SUBJECTS: One hundred and one caregivers with children under the age of 5 years and who have been living the USA for fewer than 4 years. RESULTS: Food insecurity was indicated in approximately half of households (53%). The occurrence of food insecurity was associated with measures of socio-economic status such as income, employment status and participation in the Food Stamp Program (P < 0.05). Measures of acculturation such as difficulty in the shopping environment and language difficulty were also associated with the occurrence and severity of food insecurity, as was time lived in the USA (P < 0.05). Among households who had been in the USA for 1 year or less, food insecurity was indicated in 73%, whereas among households who had been in the USA for at least 3 years food insecurity was indicted in 33%. CONCLUSIONS: Refugees are a potentially vulnerable group and our results echo others in suggesting a need for more thorough monitoring of the health and well-being of recently resettled refugees. These results also suggest that reliance on employment as the sole indicator of success in the resettlement process may be too narrow an indicator. Future research should focus on a wider range of measures of health and well-being.     

Temporal sequence of cell wall disassembly events in developing fruits. 2. Analysis of blueberry (Vaccinium species)

Softening and pathogen susceptibility are the major factors limiting the marketing of blueberries as fresh fruits, and these traits are associated with fruit cell wall structure. However, few studies that characterize wall modifications occurring during development and ripening have been reported for this fruit. In this study the ripening-associated modifications of blueberry fruit cell walls (composition, pectin and hemicellulose solubilization, and depolymerization) at five stages of ripeness have been analyzed. Xylose was found to be the most abundant noncellulosic neutral sugar associated with fruit walls, and the observed high Xyl/Glc ratio suggested that xylans, which are usually a minor hemicellulosic fruit wall component, are abundant in blueberry. The pectic matrix showed increased solubilization at early and intermediate stages of ripening, but no changes were detected in late ripening. Furthermore, little reduction in pectin polymer size occurred during blueberry ripening. In contrast, hemicellulose levels decreased as ripening progressed, and a clear depolymerization of these components was observed. A model for cell wall degradation in this fruit is discussed.     

Whole-tree water balance and indicators for short-term drought stress in non-bearing ‘Barnea’ olives

Drainage-weighing lysimeters allowed monitoring of water balance components of non-bearing olive (Olea europaea cv Barnea) trees over a 3-month period including short-term events of controlled but severe water stress. The objective of the study was to evaluate a variety of soil and plant-based water status and drought stress monitoring methods on the basis of tree-scale evapotranspiration (ET). As the trees entered into and recovered from water stress, meteorological data, actual ET (ET_a), soil water content and changes in leaf turgor pressure were continuously monitored. Additionally, midday measurements of stem water potential, stomatal conductance, canopy temperature, and quantum yield of PSII photochemistry were conducted. Diurnal (dawn to dusk) measurements of all the above were made hourly on days of maximum stress. Shoot elongation rate was measured for periods of stress and recovery. Quantum yield of PSII photochemistry, stomatal conductance, and stem water potential all successfully indicated reductions in whole-tree water consumption beginning at moderate stress levels. These measured parameters fully recovered to the levels of non-stressed trees soon after water application was renewed. Shoot elongation was reduced 25-30% for the 10-day period during and following drought and recovered thereafter to levels of non-stressed trees. Whole-tree ET_a was reduced by as much as 20% even following full recovery of the leaf level parameters, suggesting reduced canopy size and growth due to the stress period. Non-destructive, continuous (turgor pressure) and remotely sensed (canopy temperature) methods showed promising potential for monitoring effects of water stress, in spite of technological and data interpretation challenges requiring further attention.     

Zebrafish (Danio rerio) as an animal model for bath infection by Flavobacterium psychrophilum

Flavobacterium psychrophilum is the causative agent of bacterial cold-water disease and rainbow trout syndrome in freshwater salmonid fish worldwide, generating injuries and high mortality rates. Despite several studies on this bacterium, the infection mechanism remains unknown due to limitations in the employed animal models. In this work, we propose using zebrafish (Danio rerio) as a model for studying bacterial pathogenicity. To substantiate this proposal, zebrafish infection by F. psychrophilum strain JIP 02/86 was characterized. Zebrafish larvae were infected using the bath method, and morphological changes and innate immune system activation were monitored using transgenic fish. Salmonid-like infection phenotypes were observed in 4.74% of treated larvae, as manifested by fin, muscle and caudal peduncle damage. Symptomatic and dead larvae accounted for 1.35% of all challenged larvae. Interestingly, infected larvae with no infection phenotypes showed stronger innate immune system activation than specimens with phenotypes. A failure of function assay for myeloid factor pu.1 resulted in more infected larvae (up to 43.5%), suggesting that low infection rates by F. psychrophilum would be due to the protective actions of the innate immune system against this bacterium in zebrafish larvae. Our results support the use of zebrafish as an infection model for studying F. psychrophilum. Furthermore, the percentage of infected fish can be modulated by disturbing, to varying extents, the differentiation of myeloid cells. Using this evidence as a starting point, different aspects of the infection mechanism of F. psychrophilum could be studied in vivo.     

Proteome half-life dynamics in living human cells

Cells remove proteins by two processes: degradation and dilution due to cell growth. The balance between these basic processes is poorly understood. We addressed this by developing an accurate and noninvasive method for measuring protein half-lives, called "bleach-chase," that is applicable to fluorescently tagged proteins. Assaying 100 proteins in living human cancer cells showed half-lives that ranged between 45 minutes and 22.5 hours. A variety of stresses that stop cell division showed the same general effect: Long-lived proteins became longer-lived, whereas short-lived proteins remained largely unaffected. This effect is due to the relative strengths of degradation and dilution and suggests a mechanism for differential killing of rapidly growing cells by growth-arresting drugs. This approach opens a way to understand proteome half-life dynamics in living cells.