Effects of soil‐surface microbial community phenotype upon physical and hydrological properties of an arable soil: a microcosm study

The nature of the first few millimetres of the soil surface strongly affects water infiltration rates, generation of run‐off, soil detachment and sediment transport. We hypothesized that the phenotypic community structure of the soil‐surface microbiota affects the physical and hydrological properties of an arable soil. A range of contrasting microbial community phenotypes were established in microcosms by manipulating the wavelength of light reaching the soil surface, with the microcosms being incubated in the field for approximately 6 months. Phenotypes were characterized by phospholipid fatty acid (PLFA), ergosterol and chlorophyll analysis. The microcosms were then subjected to simulated rainfall at an intensity of 60 mm hour⁻¹ for 20 minutes at a slope gradient of 9°. Water infiltration rates, run‐off generation, soil loss (including a particle‐size analysis of the sediment) and soil‐surface shear strength were quantified. Distinct microbial phenotypes developed on the soil surfaces with UV‐A and restricted‐UV treatments when compared with subsurface layers. There was significantly greater fungal biomass in the no‐light treatment when compared with all other treatments, with approximately 4.5 times more ergosterol being extracted from the subsurface layer of the no‐light treatment when compared with other treatments. The no‐light treatment produced the greatest amount of run‐off, which was approximately 15% greater than the restricted photosynthetically‐active radiation (PAR) treatment. Significant differences between treatments were also found in shear strengths, with increasing strength being correlated with increasing ergosterol concentration. Water infiltration, erosion and the sediment concentrations in run‐off were not significantly different between treatments. This work demonstrates that the quality of light reaching the soil surface affects the microbial phenotype, in turn producing functional consequences with regard to the physical and hydrological properties of arable soil surfaces.     

Dynamic oxygen mapping in the root zone by fluorescence dye imaging combined with neutron radiography

Purpose  

The rooted zone of a soil, more precisely the rhizosphere, is a very dynamic system. Some of the key processes are water uptake and root respiration. We have developed a novel method for measuring the real-time distribution of water and oxygen concentration in the rhizosphere as a biogeochemical interface in soil. This enables understanding where and when roots are active in respect to root respiration and water uptake and how the soil responds to it.     

Effects of Supplemental Calcium on Ion Accumulation,Transport and Plant Growth of Salt Sensitive Brassica Rapa Landrace

ABSTRACT

Effects of three supplemental calcium (Ca⁺⁺; 2.5, 5.0, and 10 mole m^?3) concentrations on ion accumulation, transport, selectivity, and plant growth of salt-sensitive species, Brassica rapa ‘Sani’ in saline medium were investigated. Supplemental Ca⁺⁺ in the presence of 125 mol m^?3 sodium chloride (NaCl) did not improve the dry weight and leaf area indicating no role played by Ca⁺⁺ in the alleviation of salinity induced growth inhibition. However, calcium chloride (CaCl₂) did significantly affect sodium (Na⁺), potassium (K⁺), and Ca⁺⁺ contents of roots and shoots. The ion contents of shoots were significantly greater than those of roots per g dry weight, indicating ion transportation to shoots is greater than ion accumulation in roots. Use of CaCl₂ in 125 mol m^?3 NaCl reduced the Na⁺ content but increased K⁺ and Ca⁺⁺ contents in shoots. Sodium contents in shoots differed among the supplemental Ca⁺⁺ treatments indicating the role of CaCl₂ in Na⁺ ions transportation. Calcium content in shoots declined significantly in the control treatment (0 CaCl₂) but increased significantly in 10 mol m^?3 CaCl₂. The root also showed the effects of Ca⁺⁺ on the reduction of Na⁺ content and the increase of K⁺ and Ca⁺⁺ content. Unexpectedly, 5 mol m^?3 CaCl₂ induced the highest Na⁺ content in roots at 16 days after treatment. Supplemental CaCl₂ application influenced the K⁺ or Ca⁺⁺ selectivity over Na⁺ in two ways, ion accumulation at roots and transport to shoots. However, high CaCl₂ treatments allowed greater Ca⁺⁺ selectivity over Na⁺ than low CaCl₂. Likewise, high supplemental CaCl₂ showed higher K⁺ selectivity over Na⁺ than low CaCl₂. A marked increase in K⁺ versus Na⁺ selectivity for the transport process occurred at 10 mol m^?3 CaCl₂ treatments. The roots and shoots exhibited higher K⁺/Na⁺ and Ca⁺⁺/Na⁺ ratios in high CaCl₂ treatment than in low. The results are discussed in context to supplemental Ca⁺⁺ concentrations, ions accumulation, transportation and selectivity of salt sensitive Brassica rapa cultivar.     

The pond's shape matters: differential growth,physiological condition and survival of epibenthic Farfantepenaeus aztecus postlarvae

As a function of the water quality provided by square, circular and oval experimental ponds, the growth, survival and oxygen requirements in epibenthic postlarvae of Farfantepenaeus aztecus were analysed in relation to their routine metabolism and apparent heat increment. Temperature, oxygen concentration, pH and salinity were measured daily in two experimental ponds of each shape. The postlarvae oxygen consumption during two 24‐h cycles, their growth, physiological condition and survival and the productivity in the ponds were estimated. Low values of pH, oxygen concentration and phytobenthos productivity, and reduced postlarvae relative growth and survival were observed in the square ponds. We suggest that the latter results from a deficient water circulation related to the effect of the pond's shape on dissolved oxygen levels and, consequently, on growth and survival. The postlarvae routine metabolism, including feeding, varied between 1.91 and 2.25 mg O₂ h^?1 g^?1 wet weight, whereas the minimum oxygen concentration needed in the ponds is approximately 4.25 mg O₂ L^?1. These conditions were achieved in the oval ponds concurrent with higher survival and growth values, in which individuals distributed randomly, for which we suggest that oval‐shaped ponds could be the most adequate for the culture of this and other penaeid species.     

Age and growth of the largemouth perch Percichthys colhuapiensis in the Negro river, Argentine Patagonia

Largemouth perch (Percichthys colhuapiensis) represents one of the most economically important fish species in the Argentine Patagonia. However, little research has been done on the age and growth and population dynamics of this fish, though both studies are essential to properly deal with fisheries forecasts and management. As a contribution to elaborating management programmes for P. colhuapiensis, we evaluated the age and growth of this species in the Negro river via scale and whole otolith reading methods. The sample consisted of 579 specimens ranging in total length (TL) from 90 to 475 mm, captured seasonally from December 1994 to December 1995. The formation of scale annuli (end of winter) and the hyaline zone on otoliths (winter) of adult fish coincided with the beginning of the spawning season (end of winter-beginning of spring). The maximum estimated age was 11 years, which indicates that this is a relatively long-lived species. Otoliths were useful for ageing specimens 1–5 years-old, but above this age whole otoliths yielded lower age estimates than scales. Isometric growth of weight with length was found for total population, juveniles, and separate sexes (p > 0.25 in all cases). No significant differences between the length–weight relationships of sexes were observed (p > 0.10). Length at first maturity was significantly higher for males (TL₅₀ = 271 mm TL; r = 0.88) than for females (TL₅₀ = 243 mm TL; r = 0.96) (p < 0.01). Largemouth perch exhibited a consistent pattern of increase in length with age, with a period of fast growth during the first 5 years, and a slow-growing phase during the rest of his life. The growth parameters based on scale data were L∞: 462.1 mm, k = 0.23 and t₀ = −0.94 for total population, L∞: 402.3 mm, k = 0.33 and t₀ = −0.67 for males, and L∞: 548.4 mm, k = 0.15 and t₀ = −1.59 for females, whereas those based on otolith reading were L∞: 537.4 mm, k = 0.17 and t₀ = −1.0 for total population, L∞: 497.6 mm, k = 0.21 and t₀ = −0.79 for males, and L∞: 582.0 mm, k = 0.14 and t₀ = −1.53 for females. Scales are concluded to be the best structure to age P. colhuapiensis because they rendered L∞ values closer to the maximum TL observed, high precision, easiness of collection, low processing time, and the possibility of performing non-destructive monitoring studies.     

Association mapping reveals loci associated with multiple traits that affect grain yield and adaptation in soft winter wheat

Genome-wide association studies (GWAS) are useful to facilitate crop improvement via enhanced knowledge of marker-trait associations (MTA). A GWAS for grain yield (GY), yield components, and agronomic traits was conducted using a diverse panel of 239 soft red winter wheat (Triticum aestivum) genotypes evaluated across two growing seasons and eight site-years. Analysis of variance showed significant environment, genotype, and genotype-by-environment effects for GY and yield components. Narrow sense heritability of GY (h ²  = 0.48) was moderate compared to other traits including plant height (h ²  = 0.81) and kernel weight (h ²  = 0.77). There were 112 significant MTA (p < 0.0005) detected for eight measured traits using compressed mixed linear models and 5715 single nucleotide polymorphism markers. MTA for GY and agronomic traits coincided with previously reported QTL for winter and spring wheat. Highly significant MTA for GY showed an overall negative allelic effect for the minor allele, indicating selection against these alleles by breeders. Markers associated with multiple traits observed on chromosomes 1A, 2D, 3B, and 4B with positive minor effects serve as potential targets for marker assisted breeding to select for improvement of GY and related traits. Following marker validation, these multi-trait loci have the potential to be utilized for MAS to improve GY and adaptation of soft red winter wheat.     

Characterization of resistance to the wheat stem sawfly in spring wheat landrace accessions from targeted geographic regions of the world

Plant landraces have long been recognized as potential gene pools for biotic and abiotic stress-related genes. This research used spring wheat landrace accessions to identify new sources of resistance to the wheat stem sawfly (WSS) (Cephus cinctus Norton), an important insect pest of wheat in the northern Great Plains of North America. Screening efforts targeted 1409 accessions from six geographical areas of the world where other species of grain sawflies are endemic or where a high frequency of accessions possesses the resistance characteristic of solid stems. Resistance was observed in approximately 14% of accessions. Half of the lines displayed both antixenosis and antibiosis types of resistance. Among the resistant accessions, 41% had solid or semi-solid stems. Molecular genetic screening for haplotypes at the solid stem QTL, Qss.msub.3BL, showed that 15% of lines shared the haplotype derived from ‘S-615’, the original donor of the solid stem trait to North American germplasm. Other haplotypes associated with solid stems were also observed. Haplotype diversity was greater in the center of origin of wheat. Evaluation of a representative set of resistant landrace accessions in replicated field trials at four locations over a three year period identified accessions with potential genes for reduced WSS infestation, increased WSS mortality, and increased indirect defense via parasitoids. Exploitation of distinct types of plant defense will expand the genetic diversity for WSS resistance currently present in elite breeding lines.     

The effect of urban refuse compost and different tractors tyres on soil physical properties, soil erosion and maize yield

Application of urban refuse compost to agricultural soil could help to solve municipalities' problems related to the increasing production of waste only if soil property improvement and environmental conservation can be demonstrated. The use of low-pressure tractor tyres is another proposal in modern agriculture for reducing soil compaction. This study thus aimed to detect the effects of both compost and low-pressure tractor tyres on soil loss, runoff, aggregate stability, bulk density, penetrometer resistance and maize (Zea mays L.) yield. A 3-year field experiment was carried out on a hilly (15% slope) clay loam soil in central Italy. Twelve plots (200 m² each) were monitored with tipping-pot devices for runoff and soil erosion measurement. Treatments were: compost addition (64 Mg ha⁻¹), mineral fertilisation, use of low-pressure tyres, use of traditional tyres, with three replicates, in a fully randomised block design. Compost was applied once at the beginning of the experiment. Runoff reduction due to compost ranged between 7 and 399 m³ ha⁻¹ during seasons, while soil erosion was reduced between 0.2 and 2.4 Mg ha⁻¹. Mean weight diameter (MWD) of stable aggregates, measured on wheel tracks, increased by 2.19 mm, then progressively decreased. Compost significantly increased bulk density by 0.08 Mg m⁻³ due to its inert fraction content. This effect was less evident in the second and third year, probably due to harrowing. Maize yields were slightly, but significantly, reduced in composted plots by 1.72 Mg ha⁻¹ in the third year. Low-pressure tyres significantly reduced soil loss in the third year by 1 Mg ha⁻¹. Furthermore, they did not significantly influence runoff volumes and soil structural stability. Low-pressure tyres or compost addition were singly able to prevent an increase in penetrometer resistance due to agricultural machinery traffic. Low-pressure tyres increased the maize yield during the 3 years and the difference (0.4 Mg ha⁻¹) became significant in the third year. In conclusion, results show the positive lasting effect of compost in ameliorating soil physical properties and reducing runoff and soil erosion. Low-pressure tyres appear justifiable both for the observed increase of grain production and reduction of soil compaction. This latter effect is, nevertheless, masked by compost addition which is also able to reduce penetrometer resistance. Further research is required to explain the causes of the slight inhibition of grain yield observed when compost was compared with mineral fertilisation.     

Chemical comparison of goldenseal (Hydrastis canadensis L.) root powder from three commercial suppliers

The characterization of herbal materials is a significant challenge to analytical chemists. Goldenseal (Hydrastis canadensis L.), which has been chosen for toxicity evaluation by NIEHS, is among the top 15 herbal supplements currently on the market and contains a complex mixture of indigenous components ranging from carbohydrates and amino acids to isoquinoline alkaloids. One key component of herbal supplement production is botanical authentication, which is also recommended prior to initiation of efficacy or toxicological studies. To evaluate material available to consumers, goldenseal root powder was obtained from three commercial suppliers and a strategy was developed for characterization and comparison that included Soxhlet extraction, HPLC, GC-MS, and LC-MS analyses. HPLC was used to determine the weight percentages of the goldenseal alkaloids berberine, hydrastine, and canadine in the various extract residues. Palmatine, an isoquinoline alkaloid native to Coptis spp. and other common goldenseal adulterants, was also quantitated using HPLC. GC-MS was used to identify non-alkaloid constituents in goldenseal root powder, whereas LC-MS was used to identify alkaloid components. After review of the characterization data, it was determined that alkaloid content was the best biomarker for goldenseal. A 20-min ambient extraction method for the determination of alkaloid content was also developed and used to analyze the commercial material. All three lots of purchased material contained goldenseal alkaloids hydrastinine, berberastine, tetrahydroberberastine, canadaline, berberine, hydrastine, and canadine. Material from a single supplier also contained palmatine, coptisine, and jatrorrhizine, thus indicating that the material was not pure goldenseal. Comparative data for three commercial sources of goldenseal root powder are presented.     

Chemical authentication of extra virgin olive oil varieties by supervised chemometric procedures.

This work has focused on discriminating extra virgin olive oils from Sabina (Lazio, Italy) by olive fruit variety (cultivar). A set of oils from five of the most widespread cultivars (Carboncella, Frantoio, Leccino, Moraiolo, and Pendolino) in this geographical area was analyzed for chemical composition using only the Official Analytical Methods, recognized for the quality control and commercial classification of this product. The obtained data set was converted into a computer-compatible format, and principal component analysis (PCA) and a method based on the Fisher F ratio were used to reduce the number of variables without a significant loss of chemical information. Then, to differentiate these samples, two supervised chemometric procedures were applied to process the experimental data: linear discriminant analysis (LDA) and artificial neural network (ANN) using the back-propagation algorithm. It was found that both of these techniques were able to generalize and correctly predict all of the samples in the test set. However, these results were obtained using 10 variables for LDA and 6 (the major fatty acid percentages, determined by a single gas chromatogram) for ANN, which, in this case, appears to provide a better prediction ability and a simpler chemical analysis. Finally, it is pointed out that, to achieve the correct authentication of all samples, the selected training set must be representative of the whole data set.