Development and Characterization of Novel Polymorphic Microsatellite Markers for Tapinoma indicum (Hymenoptera: Formicidae)

Tapinoma indicum (Forel) (Hymenoptera: Formicidae) is a nuisance pest in Asia countries. However, studies on T. indicum are limited, especially in the field of molecular biology, to investigate the species characteristic at the molecular level. This paper aims to provide valuable genetic markers as tools with which to study the T. indicum population. In this study, a total of 143,998 microsatellite markers were developed based on the 2.61 × 10⁶ microsatellites isolated from T. indicum genomic DNA sequences. Fifty selected microsatellite markers were amplified with varying numbers of alleles ranging from 0 to 19. Seven out of fifty microsatellite markers were characterized for polymorphism with the Hardy–Weinberg equilibrium (HWE) and linkage disequilibrium (LD) analysis. All seven microsatellite markers demonstrated a high polymorphic information content (PIC) value ranging from 0.87 to 0.93, with a mean value of 0.90. There is no evidence of scoring errors caused by stutter peaks, no large allele dropout, and no linkage disequilibrium among the seven loci; although loci Ti-Tr04, Ti-Tr09, Ti-Te04, Ti-Te13, and Ti-Pe5 showed signs of null alleles and deviation from the HWE due to excessive homozygosity. In conclusion, a significant amount of microsatellite markers was developed from the data set of next-generation sequencing, and seven of microsatellite markers were validated as informative genetic markers that can be utilized to study the T. indicum population.     

Modification of SWAT auto-calibration for accurate flow estimation at all flow regimes

To secure accuracy in the Soil and Water Assessment Tool (SWAT) simulation for various hydrology and water quality studies, calibration and validation should be performed. When calibrating and validating the SWAT model with measured data, the Nash–Sutcliffe efficiency (NSE) is widely used, and is also used as a goal function of auto-calibration in the current SWAT model (SWAT ver. 2009). However, the NSE value has been known to be influenced by high values within a given dataset, at the cost of the accuracy in estimated lower flow values. Furthermore, the NSE is unable to consider direct runoff and baseflow separately. In this study, the existing SWAT auto-calibration was modified with direct runoff separation and flow clustering calibration, and current and modified SWAT auto-calibration were applied to the Soyanggang-dam watershed in South Korea. As a result, the NSE values for total streamflow, high flow, and low flow groups in direct runoff, and baseflow estimated through modified SWAT auto-calibration were 0.84, 0.34, 0.09, and 0.90, respectively. The NSE values of current SWAT auto-calibration were 0.83, 0.47, ?0.14, and 0.90, respectively. As shown in this study, the modified SWAT auto-calibration shows better calibration results than current SWAT auto-calibration. With these capabilities, the SWAT-estimated flow matched the measured flow data well for the entire flow regime. The modified SWAT auto-calibration module developed in this study will provide a very efficient tool for the accurate simulation of hydrology, sediment transport, and water quality with no additional input datasets.     

A concept to define a quantitative measure of mixture state

Mixing is a mechanical operation to distribute components evenly in a plane or a space. Composite molding and textile manufacturing industries are routinely taking advantage of mixing operations in order to distribute raw materials uniformly or in a specific way during composite molding or textile producing processes. Key issues to identify any mixed state are (1) the time needed to accomplish through mixing (the time scale) and (2) the extent of the homogeneity of the mixture in a plane (the length scale). In this paper, a new concept of mixture status is focused on the length scale. The goal to derive a new concept of mixture status is to establish a measure to describe the mixed extent of a mixture consisting of two components, derived from clump size and clump distribution. To verify the usefulness of the newly conceived “Mixedness Index”, the suggested definition was compared with the existing coefficient of variation (CV) method based on simulation and experiments. Results showed a reasonable relationship between the Mixedness Index and observation, demonstrating the feasibility of the proposed Mixedness Index for industrial applications.     

Bioactive Compounds from Marine Sponges: Fundamentals and Applications

Marine sponges are sessile invertebrates that can be found in temperate, polar and tropical regions. They are known to be major contributors of bioactive compounds, which are discovered in and extracted from the marine environment. The compounds extracted from these sponges are known to exhibit various bioactivities, such as antimicrobial, antitumor and general cytotoxicity. For example, various compounds isolated from Theonella swinhoei have showcased various bioactivities, such as those that are antibacterial, antiviral and antifungal. In this review, we discuss bioactive compounds that have been identified from marine sponges that showcase the ability to act as antibacterial, antiviral, anti-malarial and antifungal agents against human pathogens and fish pathogens in the aquaculture industry. Moreover, the application of such compounds as antimicrobial agents in other veterinary commodities, such as poultry, cattle farming and domesticated cats, is discussed, along with a brief discussion regarding the mode of action of these compounds on the targeted sites in various pathogens. The bioactivity of the compounds discussed in this review is focused mainly on compounds that have been identified between 2000 and 2020 and includes the novel compounds discovered from 2018 to 2021.     

Characterization of culture supernatant proteins from Brucella abortus and its protection effects against murine brucellosis

In this study, we characterized the secreted proteins of Brucella abortus into the enriched media under the bacterial laboratory growth condition and investigated the pathogenic importance of culture supernatant (CS) proteins to B. abortus infection. CS proteins from stationary phase were concentrated and analyzed using 2D electrophoresis. In MALDI TOF/TOF analysis, more than 27 proteins including CuZn SOD, Dps, Tat, OMPs, Adh, LivF, Tuf, SucC, GroEL and DnaK were identified. Cytotoxic effects of CS proteins were found to increase in a dose-dependent manner in RAW 264.7 cells. Upon B. abortus challenge into phagocytes, however, CS proteins pre-treated cells exhibited lower bacterial uptake and intracellular replication compared to untreated cells. Immunization with CS proteins induced a strong humoral and cell mediated immune responses and exhibited significant higher degree of protection against virulence of B. abortus infection compared to mice immunized with Brucella broth protein (BBP). Taken together, these results indicate that B. abortus secreted a number of soluble immunogenic proteins under laboratory culture condition, which can promote antibody production resulted in enhancing host defense against to subsequently bacterial infection. Moreover, further analysis of CS proteins may help to understand the pathogenic mechanism of B. abortus infection and host–pathogen interaction.     

Elasticity, microstructure and thermal stability of foliage and fruit fibres from four tropical crops

A comparative analysis of the elasticity, microstructure and thermal stability of fibres (thickness ranging from 43.4 to 189.4 µm) isolated from pineapple leaves (PALF), coconut coir (COIR), banana leaf-stem (BAN) and oil palm empty fruit bunch (OPEFB) reported in this study. Statistical analysis of the mechanical properties derived from tensile test to rupture reveals significant differences (P<0.05) in the fibre strength (σ), stiffness (E) and extensibility (parameterized by the strain to rupture, ?). It is observed that COIR fibres yield the smallest strength, σ (=99.8±22.5 MPa), and stiffness, E (= 0.5±0.1 GPa), while PALF fibres yield the largest σ (=639.5±301.6 MPa) and E (=7.1±3.1 GPa); PALF fibres exhibit the smallest ? (=0.11±0.03) but OPEFB fibres yield the largest ? (=2.0±1.3). From scanning electron micrographs, it is observed that cellulose fibril rupture predominates in OPEFB, COIR and BAN fibres; a large proportion of the cellulose fibrils fail by pullout in PALF fibres. Thermogravimetric analysis reveals that all fibres are thermally stable up to 250 °C; the fibre residue ranges from 30 to 80 wt% after heating to 500 °C. In particular, BAN experiences the highest weight loss and PALF experiences the lowest weight loss. The findings lend to a simple approach for determining the performance of the composites by assessing the type of natural fibres for reinforcing polymeric matrices.     

Anticancer Potential of Syzygium Species: a Review

Plant Foods for Human Nutrition - Cancer is a preventable and treatable disease, however, the incidence rates are on the rise. Classical treatment modalities for cancer include surgery,...