The use of citrus tristeza virus (CTV) containing a green fluorescent protein gene as a tool to evaluate resistance/tolerance of transgenic citrus plants

The T36 strain of citrus tristeza virus (CTV) expressing green fluorescent protein gene (CTV-GFP) was used to detect replication of CTV in wild-type (WT) ‘Hamlin’ sweet orange plants and those transformed with the use of Agrobacterium tumefaciens strain harboring a binary vector with a coat protein gene from either T36 or T30 isolate of CTV. Soil-adapted WT and transgenic plants were challenged with CTV by grafting shoots from CTV-GFP infected plants. None of the transgenic plants appeared to be able to inhibit CTV replication as CTV-associated GFP fluorescence in all of them was detected by fluorescent microscopy. For the purpose of comparison of two different methods, CTV multiplication in transgenic plants was also examined by enzyme-linked immunosorbent assay (ELISA) assays. GFP-labeled CTV represents a useful tool for estimation of susceptibility of citrus cultivars or transgenic lines to CTV infection. This method using CTV-GFP is simpler, cheaper and less time-consuming than ELISA.     

Structural comparison of arabinoxylans from two barley side-stream fractions

The structures of barley ( Hordeum vulgare) arabinoxylans isolated from two industrial side fractions, barley husks (BH) and barley fiber (BF), were characterized. Arabinoxylans were extracted with saturated barium hydroxide after enzymatic pretreatment. Barium hydroxide was selective toward arabinoxylans, and only a minor amount of glucose-containing material was coextracted. Acid methanolysis followed by gas chromatography, 1H NMR spectroscopy, and specific enzymatic treatments followed by anion exchange chromatography with pulse amperometric detection (HPAEC-PAD) revealed that the chemical structure of barley husk arabinoxylan (BHAX) clearly differed from that of barley fiber arabinoxylan (BFAX). BFAX was more branched, containing more beta-D-xylopyranosyl (beta-D-Xylp) residues carrying alpha-L-arabinofuranosyl (alpha-L-Araf) units at both O-2 and O-3 positions. BHAX, on the other hand, contained more 2-O-beta-D-Xyl p-alpha-L-Ara f substituents than BFAX. BHAX and BFAX also differed with respect to the hydrodynamic properties investigated with multidetector size exclusion chromatography. BFAX had a higher weight-average molar mass and larger hydrodynamic volume, the latter indicating less dense conformation than BHAX. Mn, Mw /Mn, Rh, and the Mark-Houwink a value were also determined for both arabinoxylans.     

Diverse antimicrobial killing by Enterococcus faecium E 50-52 bacteriocin

An effective bacteriocin was identified and characterized. Lactic acid bacteria were screened against Campylobacter jejuni. One bacteriocin producer, Enterococcus faecium (NRRL B-30746), was studied. The isolate was grown, and the bacteriocin was purified to single-band homogeneity. Biochemical traits indicated that the peptide was a Class IIa bacteriocin, and it was named E 50-52. The bacteriocin had a molecular weight of 3339.7 and an isoelectric point of 8.0. The minimal inhibitory concentrations of E 50-52 against C. jejuni, Yersinia spp., Salmonella spp., Escherichia coli O157:H7, Shigella dysenteriae, Morganella morganii, Staphylococcus spp., and Listeria spp. ranged from 0.025 to 32 microg/mL. In therapeutic broiler trials, oral treatment with E 50-52 reduced both C. jejuni and Salmonella enteritidis by more than 100,000-fold in the ceca, and systemic S. enteritidis was reduced in the liver and spleen. The wide range of antibacterial activity of bacteriocin E 50-52 against pathogens provides a promising alternative to antibiotics.     

Effect of humic preparation on winter wheat productivity and rhizosphere microbial community under herbicide-induced stress

Purpose

The aim of the present work was to study the effect of humic preparation on the yielding capacity of winter wheat, the dynamics of mineral nutrients in the rhizosphere, and the activity of rhizosphere microbial community, as well as the protective properties of humate treatment under the stress caused by the application of a sulfonylurea herbicide.

Materials and methods

The humic preparation BIO-Don is prepared from vermicompost by alkaline extraction. The effect of humic preparation was estimated in a field experiment. The contents of the mobile ammonium and nitrate, exchangeable potassium, phosphorus, and humus were determined. Sampling and nutrient determination were performed in the tillering, booting, and grain maturing stages. Production experiments on the study of the combined effect of the humic preparation and the sunfonylurea pesticide Granstar Pro were performed in 2015 and 2017. The dynamics of mobile phosphorus in soil was studied. The abundance of culturable bacteria in the rhizosphere and bacterial species with different ecological strategies was determined. The dominant bacterial species were identified by MALDI-TOF mass spectrometry.

Results and discussion

The results of a small-plot experiment showed that at the tillering stage, the use of humic preparation has led to significantly higher supply of soil with mobile phosphorus. The winter wheat yield was 32.0 dt/ha in the control and 39.2 dt/ha with humic preparation or 22.5% gain in yield. The results of production experiment show that the application of sulfonylurea herbicide induced a chemical stress on winter wheat plants, but the use of humic preparation reduced this effect and increased the availability of phosphorus compounds. The treatment of plants with pesticides caused the general decrease in abundance of bacteria in the rhizosphere. The effect on quickly growing bacteria is more pronounced, while slowly growing bacteria and fungi are more resistant to this impact.

Conclusions

The application of humic preparation to winter wheat plantations allows to decrease the toxic effect of sulfonylurea herbicide, improve the supply of soil with mineral nutrients, and increase the crop yield. The favorable effects of humic preparation can be related to the active regulation of phosphorus mobilization by plants through the mechanism of root exudates due to the activation of root microbiota.

     

Polycyclic aromatic hydrocarbons in atmospheric particulate depositions and urban soils of Moscow,Russia

Purpose

The study was conducted to quantify the polycyclic aromatic hydrocarbons (PAHs) accumulation in urban soils from different functional areas via atmospheric inputs with particulate matter.

Materials and methods

PAH concentration and pattern were measured in the particulate matter of snow depositions, in the upper layers of artificial soils from densely built-up areas and in the undisturbed natural soils (Umbric Retisols) from green park area. Samples were collected in 2011–2013 at 58 sites with different traffic activities located at the territory of the Eastern Administrative Okrug of Moscow. The soil samples and filters with particulate matter were extracted by pressurized liquid extraction using Dionex ASE200. Clean-up analyses were performed on SPE cartridges filled with silica gel. Concentrations of PAHs were determined by high-performance liquid chromatography using an Agilent 1100 System equipped with fluorescent detector.

Results and discussion

Mean values of PAH input with snow particles were 45–57 μg/m² for recreational and residential zones, and 140–264 μg/m² for traffic zones. The samples of depositions from different functional areas showed a similar PAH pattern and consisted primarily of 3–4-ring PAHs. Total PAH concentrations in upper layers of artificial soils showed similar mean values of 1.43–2.21 μg/g for all functional zones. The PAH content in soils from the park area was twofold lower than that from the built-up area (0.34–0.63 μg/g), despite equal levels of atmosphere contamination on these territories. The upper layers of natural soils from recreational and traffic zones showed slight differences in PAH content, though PAH input with snow was fivefold higher in the traffic zone. Compared with airborne depositions, soils contained significant amounts of 5–6-ring PAHs.

Conclusions

A high level of soil PAH contamination in urban areas of Moscow, several orders of magnitude higher than the current PAH input to them from the atmosphere, indicates a lack of direct connection of the PAH pool in soils with this source. The high PAH content in the upper layer of constructed soils can be the result of repeated use of materials subjected to a constant technogenic impact for the production of artificial soils.

     

Impact of soil organic matter on calcium carbonate equilibrium and forms of Pb in water extracts from Kastanozem complex

Purpose

Accounting for ionic strength and ion association, the degree of calculated supersaturation with CaCO₃ of gleyic solonetz and molic solonetz soil solution is high. The purpose of the research was to reveal the effect of the water-dissolved organic matter (DOM) on the calcium carbonate equilibrium (CCE) in soil solution, to create a thermodynamic model of carbonate association and complexation with DOM and heavy metals (HMs), and to correct the principal of soil management.

Materials and methods

Object of research—Kastanozem complex of the dry steppe, Rostov Oblast, Russia. The water extraction of soluble salts was made at the water-to soil-ratio 5:1 and analyzed using standard methods. DOM content was determined by Strosser (J Agrobiol 27:49–60, 2010). The soil solution macro-ion equilibrium composition was calculated using ION-2 program (Endovitsky et al. 2009). DOM role in soil solution supersaturation with СаСО₃ was assessed, comparing C content in real solution and in identical artificial solution prepared without organic matter. Taking into account the ion association, the molar fractions of free and bound HM ion were calculated using microelement association coefficient, k_as(ME). The soil liquid-phase saturation with CaCO₃ was characterized by the ratio of the real solubility product (S) to the thermodynamic solubility product (S⁰): К?=?S/S⁰.

Results and discussion

The soil solution supersaturation with CaCO₃ was characterized by the product of analytical concentrations (S), equilibrium concentrations [accounting ion activity (S^I), ion association (S^II), ion association and complexation (S^III)], and the thermodynamic solubility product (S⁰). To evaluate the role of DOM in soil solution supersaturation with CaCO₃, the initial pure Ca (HCO₃)₂ solution series was prepared. The humic and fulvic acids from the illuvial horizon of gleyic solonetz with concentrations of 20 mg C L^?1 and 120 mg C L^?1 decreased the CaCO₃ precipitation compared with initial soil solution. The release of CaCO₃ from soil water extracts containing water-soluble organic matter was 1.2–1.9 times less compared with identical artificial solution not containing organic matter. The HM binding by carbonates is proportional to the DOM content.

Conclusions

In molic solonetz and gleyic solonetz, the neutralization of the soda should be assessed by the soil solution supersaturation with CaCO₃. To calculate the degree of HM passivation in soil solution containing DOM, the coefficient of soil solution oversaturation with CaCO₃ is proposed. For reducing soil organic matter and DOM mobility and loss from soil, as well as for Pb passivation, intra-soil mechanical processing, intra-soil waste management, and intra-soil watering are proposed.

     

Risk factors for stillbirth and foetal mummification in four Brazilian swine herds

The objective of this study was to identify the risk factors of stillbirth and foetal mummification in 565 farrowings of four commercial pig farms in Brazil. Stillborn piglets were observed in 31.3% of the litters and the stillborn risk was 5.6%. Mummified foetuses occurred in 42.1% of the litters and the mummification risk was 3.4%. The potential risk factors were included in multivariable logistic regression models as categories: herd (1–4); parity (1, 2–5 and >5); litter size (<10, 10–12 and >12 piglets); farrowing length (≤3 or >3 h); presence of mummified foetuses (yes or no); farrowing induction (yes or no); use of oxytocin (yes or no); use of vaginal palpation (yes or no); body condition score (<3, 3 and ≥4), and placental production index (PPI) (≤5 or >5) which was measured as the ratio of total foetal weight to total placental weight. Duration of farrowing and use of farrowing induction, oxytocin or vaginal palpation were not included in the model that investigated the risk factors of foetal mummification. Two models were used to investigate the risk factors of stillbirth, one with and the other without the inclusion of farrowing length. When compared to sows of parity 2–5, sows of parity >5 had 1.7- and 1.6-times higher odds (P < 0.05) for stillbirth in the models with and without the inclusion of farrowing length, respectively. In both models, sows with more than 12 piglets/litter had 3.6-times higher odds of stillbirth occurrence compared to sows with less than 10 piglets (P < 0.05). Sows with prolonged farrowing (>3 h) had 2.0-times higher odds of stillbirth occurrence than sows with short farrowing (P < 0.05). Sows with more than 12 piglets/litter had 14.5-times higher odds of mummification compared to sows with less than 10 piglets (P < 0.05). Sows of parities 1 and >5 had 3.5- and 2.0-times, respectively, higher odds of mummification in comparison to sows of parity 2–5 (P < 0.05). Sows with low PPI had 1.7-times higher odds of mummification compared to those with high PPI (P < 0.05). A large litter, a high-parity and a prolonged farrowing increased the risk of stillbirth. The probability of having a mummified foetus was increased in very young and older sows, when having a large litter and a litter with a less efficient placenta.     

Effect of environmental variables on performance of Jerusalem artichoke (<Emphasis Type="Italic">Helianthus tuberosus</Emphasis> L.) cultivars in a long term trial: a statistical approach

Tuber yield, together with tuber number and size are the basic agronomic and breeding traits in Jerusalem artichoke and can be significantly affected by environmental factors. We report the results of a long term trial on the performance of 20 Jerusalem artichoke cultivars. The random model for means with restricted maximum likelihood (REML) procedure was used to estimate the overall effects of the genotype, environment and genotype by environment interaction on traits. The partial least square regression (PLSR) model was used for modeling genotype by environment interaction variance components with a set of available correlated environmental variables. The REML variance component estimates model revealed that tuber number and yield are more dependent on GE interaction which allowed identification of best genotypes for specific environments. The PLSR model revealed that the most important climatic variables for optimal emergence, canopy development, high tuber number and yield are adequate soil and air temperatures in April. For larger tuber mass, precipitation variables and even distribution of rainfall were the most important factor, together with soil and air temperature in June when tuber growth is initiated. The knowledge obtained in this study is valuable for the identification and understanding of key environmental factors that contribute to the performance of Jerusalem artichoke.