Registration of visible and near infrared unmanned aerial vehicle images based on Fourier-Mellin transform

The combination of aerial images acquired in the visible and near infrared spectral ranges is particularly relevant for agricultural and environmental survey. In unmanned aerial vehicle imagery, such a combination can be achieved using a set of several embedded cameras mounted close to each other, followed by an image registration step. However, due to the different nature of source images, usual registration techniques based on feature point matching are limited when dealing with blended vegetation and bare soil patterns. Here, another approach is proposed based on image spatial frequency analysis. This approach, which relies on the Fourier-Mellin transform, has been adapted to homographic registration and distortion issues. It has been successfully tested on various aerial image sets, and has proved to be particularly robust and accurate, providing a registration error below 0.3 pixels in most cases.     

Oceanographic changes and exploitation drive the spatio‐temporal dynamics of Atlantic bluefin tuna (Thunnus thynnus)

Atlantic bluefin tuna (ABFT) has always displayed spectacular changes in its spatial distribution, but the underlying mechanism of such variations still remains obscure. This study focuses on this challenging issue by scrutinizing the intriguing ‘Brazilian episode’ during which a large quantity of ABFT (a temperate species) was caught during the 1960s in the equatorial Atlantic. To investigate this event, we applied a niche model to an extensive data set of catch and environmental variables from 1960 to 2009. ABFT exhibited a remarkably large ecological niche, which matches well with our current knowledge of ABFT. Our results also depicted a high probability of ABFT occurrence in the South Atlantic and, more interestingly, favorable environmental conditions in the western equatorial Atlantic during the 1960s, but not later. ABFT could thus have migrated from their northern spawning grounds to the South Atlantic during the 1960s through the western equatorial Atlantic, playing the role of an ‘ecological bridge’. We argue that the rarity of ABFT in the southern Atlantic during the last four decades would result from the interaction of several processes, particularly oceanographic conditions, migratory behavior, density‐dependence, exploitation levels and population structure. Examination of the catch data further indicated that the fish caught in the equatorial Atlantic were from the western stock and we concluded that the lack of rebuilding of this stock could result from a regime shift due to the combination of oceanographic changes in the equatorial Atlantic and overfishing in the North Atlantic in the 1960s and 1970s.     

Evidence of altitudinal increase in photosynthetic capacity: gas exchange measurements at ambient and constant CO2 partial pressures

? Because all microclimatic variables change with elevation, it is difficult to compare plant performance and especially photosynthetic capacity at different elevations. Indeed, most previous studies investigated photosynthetic capacity of low- and high-elevation plants using constant temperature, humidity and light but varying CO₂ partial pressures (P _{CO 2}).

? Using gas exchange measurements, we compared here maximum assimilation rates (A _max) at ambient and constant-low-elevation P _{CO 2}for two temperate tree species along an altitudinal gradient (100 to 1600 m) in the Pyrénées mountains.

? Significant differences in A _max were observed between the CO₂ partial pressure treatments for elevations above 600 m, the between-treatment differences increasing with elevation up to 4 μmol m^?2 s^?1. We found an increase in A _max with increasing elevation at constant-low-elevation P _{CO 2} but not at ambient P _{CO 2} for both species. Given a 10% change in P _{CO 2}, a proportionally higher shift in maximum assimilation rate was found for both species.

? Our results showed that high elevation populations had higher photosynthetic capacity and therefore demonstrated that trees coped with extreme environmental conditions by a combination of adaptation (genetic evolution) and of acclimation. Our study also highlighted the importance of using constant CO₂ partial pressure to assess plant adaptation at different elevations.

     

Does maternal environmental condition during reproductive development induce genotypic selection in Picea abies?

In forest trees, environmental conditions during reproduction can greatly influence progeny performance. This phenomenon probably results from adaptive phenotypic plasticity but also may be associated with genotypic selection. In order to determine whether selective effects during the reproduction are environment specific, single pair-crosses of Norway spruce were studied in two contrasted maternal environments (warm and cold conditions). One family expressed large and the other small phenotypic differences between these crossing environments. The inheritance of genetic polymorphism was analysed at the seed stage. Four parental genetic maps covering 66 to 78% of the genome were constructed using 190 to 200 loci. After correcting for multiple testing, there is no evidence of locus under strong and repeatable selection. The maternal environment could thus only induce limited genotypic-selection effects during reproductive steps, and performance of progenies may be mainly affected by a long-lasting epigenetic memory regulated by temperature and photoperiod prevailing during seed production.     

Investigations on the role of cuticular wax in resistance to powdery mildew in grapevine

Cuticular wax on the plant epidermis inhibits or enhances prepenetration events of powdery mildew (Erysiphe necator Schwein). We examined the role of cuticular leaf and berry waxes as a resistance mechanism in four grapevine genotypes (Italia?×?Mercan-174, Gürcü, Isabella, Özer Karas?) resistant to powdery mildew after natural infection and inoculation. To understand cuticular wax properties, we determined the amount of wax and antifungal effects of thin layer chromatography (TLC) fractions from cuticular leaf and berry waxes, then assessed the chemical composition of fractions with different antifungal activities using gas chromatography/mass spectrometry (GC/MS). Susceptible genotypes Cabernet Sauvignon and Italia were used for comparison. Resistant and sensitive genotypes did not differ significantly in the total amount of wax on leaves and berries; however, 27 fatty acids, 26 alkanes, 6 terpenes, 4 indole derivatives and 4 ketones, and 3 amides, 3 phenols and 3 steroids were detected in fractions with high antifungal activity (≥75% inhibition of germination) in leaf and/or berry cuticular waxes of resistant genotypes only. These compounds may be evaluated as markers for powdery mildew resistance during genotype selection in a grapevine breeding program.     

Characterization of plum procyanidins by thiolytic depolymerization

The phenolic compounds of 'Green Gage' (GG) plums ( Prunus domestica L.), "Rainha Claudia Verde", from a 'protected designation of origin' (PDO), in Portugal, were quantified in both flesh and skin tissues of plums collected in two different orchards (GG-V and GG-C). Analyzes of phenolic compounds were also performed on another GG European plum obtained in France (GG-F) and two other French plums, 'Mirabelle' (M) and 'Golden Japan' (GJ). Thiolysis was used for the first time in the analysis of plum phenolic compounds. This methodology showed that the flesh and skin contain a large proportion of flavan-3-ols, which account, respectively, for 92 and 85% in GJ, 61 and 44% in GG-V, 62 and 48% in GG-C, 54 and 27% in M, and 45 and 37% in GG-F. Terminal units of procyanidins observed in plums are mainly (+)-catechin (54-77% of all terminal units in flesh and 57-81% in skin). The GJ plums showed a phenolic composition different from all of the others, with a lower content of chlorogenic acid isomers and the presence of A-type procyanidins as dimers and terminal residues of polymerized forms. The average degree of polymerization (DPn) of plum procyanidins was higher in the flesh (5-9 units) than in the skin (4-6 units). Procyanidin B7 was observed in the flesh of all GG plums and in the skin of the Portuguese ones. Principal component analysis of the phenolic composition of the flesh and skin of these plums obtained after thiolysis allowed their distinction according to the variety and origin, opening the possibility of the use of phenolic composition for variety/origin identification.     

Apple polyphenols and fibers attenuate atherosclerosis in apolipoprotein E-deficient mice

Atherosclerosis, which is closely linked to nutritional habits, is a major cause of mortality in Western countries. Most of the previous investigations carried out on health effects of apples have been focused on their capacity to lower lipid concentration as well as on their antioxidant effects. The aim of the present study was to investigate the antiatherosclerotic effects of apple polyphenols and fibers. A crude apple polyphenol extract and low-viscosity apple fibers isolated from cider apples were administered separately or in association with the diet of apo E-deficient mice. After 4 months of supplementation, lipemia and oxidative stress biomarkers were measured and atheroslerotic lesions assessed by histomorphometry. Total plasmatic cholesterol and triacylgycerol levels were not affected by supplementation, and hepatic cholesterol level was lower in the group supplemented with both fibers and polyphenols. Uric acid concentrations and antioxidant capacity (FRAP) in plasma were reduced in all groups supplemented with polyphenols or fibers. The mean lesion area was reduced by 17, 38, and 38%, respectively, for the polyphenol, fiber, and polyphenol + fiber groups. Apple constituents supplied at nutritional doses therefore limit the development of atherosclerotic lesions in the aorta of apo E-deficient mice. On the basis of the results, we hypothesize that apple fibers and polyphenols may play a role in preventing atherosclerosis disease by decreasing uric acid plasma level.     

Contribution of phytoecological data to spatialize soil erosion: Application of the RUSLE model in the Algerian atlas

Among the models used to assess water erosion, the RUSLE model is commonly used. Policy makers can act on cover (C-factor) and conservation practice (P-factor) to reduce erosion, with less costly action on soil surface characteristics. However, the widespread use of vegetation indices such as NDVI does not allow for a proper assessment of the C-factor in drylands where stones, crusted surfaces and litter strongly influence soil protection. Two sub-factors of C, canopy cover (CC) and soil cover (SC), can be assessed from phytoecological measurements that include gravel-pebbles cover, physical mulch, annual and perennial vegetation. This paper introduces a method to calculate the C-factor from phytoecological data and, in combination with remote sensing and a geographic information system (GIS), to map it over large areas. A supervised classification, based on field phytoecological data, is applied to radiometric data from Landsat-8/OLI satellite images. Then, a C-factor value, whose SC and CC subfactors are directly derived from the phytoecological measurements, is assigned to each land cover unit. This method and RUSLE are implemented on a pilot region of 3828 km² of the Saharan Atlas, composed of rangelands and steppe formations, and intended to become an observatory. The protective effect against erosion by gravel-pebbles (50%) is more than twice that of vegetation (23%). The C-factor derived from NDVI (0.67) is higher and more evenly distributed than that combining these two contributions (0.37 on average). Finally, priorities are proposed to decision-makers by crossing the synthetic map of erosion sensitivity and a decision matrix of management priorities.     

Structure and Origin of Xanthomonas arboricola pv. pruni Populations Causing Bacterial Spot of Stone Fruit Trees in Western Europe

ABSTRACT Xanthomonas arboricola pv. pruni, the causal agent of bacterial spot on stone fruit, was found in 1995 in several orchards in southeastern France. We studied population genetics of this emerging pathogen in comparison with populations from the United States, where the disease was first described, and from Italy, where the disease has occurred since 1920. Four housekeeping genes (atpD, dnaK, efp, and glnA) and the intergenic transcribed spacer region were sequenced from a total of 3.9 kb of sequences, and fluorescent amplified fragment length polymorphism (FAFLP) analysis was performed. A collection of 64 X. arboricola pv. pruni strains, including 23 strains from France, was analyzed. The X. arboricola pv. pruni population had a low diversity because no sequence polymorphisms were observed. Population diversity revealed by FAFLP was lower for the West European population than for the American population. The same bacterial genotype was detected from five countries on three continents, a geographic distribution that can be explained by human-aided migration of bacteria. Our data support the hypothesis that the pathogen originated in the United States and subsequently has been disseminated to other stone-fruit-growing regions of the world. In France, emergence of this disease was due to a recent introduction of the most prevalent genotype of the bacterium found worldwide.