Nitrogen conservation in soil and crop residues as affected by crop rotation and soil disturbance under Mediterranean conditions

We investigated conservation and cycling of N under oat–oat and lupine–oat rotations in disturbed and undisturbed soil, when roots or roots plus aboveground residues were retained. Crop residues were labelled with ¹⁵N in Year 1, and differential soil disturbance was imposed after harvest. In Year 2, plant growth, N transfer from residue into the various sinks of the second crop (plant, soil, and residual residues), and changes in microbial activity and numbers were determined. Oat biomass was greater after lupine than after oat due to differences in supply of N from these residues. Buried residues of both crops appeared to decompose faster than when left on the soil surface. Lupine residues decomposed faster than oat residues. Oat biomass was not affected by soil disturbance if grown after lupine but decreased when oat straw was buried in the soil. More residue N was recovered from soil than from the crop. Most ¹⁵N was recovered from disturbed soil, which also had greater dehydrogenase activity and more culturable fungi. At the end of the oat–oat rotation, 20 and 5 kg N ha⁻¹ were derived from the roots of the first crop in undisturbed or disturbed soil, respectively. Equivalent values for the lupine–oat rotation were 18 and 44 kg N ha⁻¹. Returning aboveground residues provided an extra 52–80 kg N ha⁻¹ for oat and 61–63 kg N ha⁻¹ for lupine relative to treatments where they were removed. Over a year, lupine contributed 9 to 20 kg N ha⁻¹ more to the agroecosystem than did oat.     

Sorption and transport of sulfonamides in soils amended with wheat straw-derived biochar: effects of water pH,coexistence copper ion,and dissolved organic matter

Purpose

Sulfonamides are widely used for the prevention and treatment of bacterial infections, hard-degraded contaminants distributed in the environment if they are discharged into the soil and water. Biochar could probably influence the geochemical behavior of ionized antibiotics in the soils.

Materials and methods

To determine the sorption/desorption of three representative sulfonamides (SAs) in soils amended with biochar, we investigated the effects of water pH, Cu²⁺, and dissolved humic acid on the sorption of sulfamethoxazole (SMX), sulfamethazine (SMZ), and sulfadiazine (SD) onto two different soil samples (S1 pH?=?5.13 and S2 pH?=?7.33) amended with wheat straw-derived biochar (size 0.5～0.6 mm).

Results and discussion

Batch experiments showed that the sorption/desorption isotherms of SAs on soil with/without biochar followed the Freundlich model. The biochar had a strong adsorption potential for SMX, SMZ, and SD both in S1 and S2 at low water pH. Except for SMX, the presence of Cu²⁺ inhibited the sorption of SMZ and SD through competing hydrophobic adsorption region in soils. HA suppressed the sorption of three sulfonamides in soil S2 by electrostatic repulsion under alkaline condition. The soil leaching column experiments showed the SA transport in soils, and S1 and S2 amended with biochar (0.5 and 1.0 wt%) brought about 12–20 % increase in SMX, SMZ, and SD retention compared to the untreated soil.

Conclusions

The results indicated that the presence of biochar effectively mitigated the mobility of ionized antibiotics such as SMX, SMZ, and SD in soils, which helps us reconsider the potential risk of antibiotics in the environment.

     

Nitrogen addition impacts on the emissions of greenhouse gases depending on the forest type: a case study in Changbai Mountain,Northeast China

Purpose

Anthropogenic-induced greenhouse gas (GHG) emission rates derived from the soil are influenced by long-term nitrogen (N) deposition and N fertilization. However, our understanding of the interplay between increased N load and GHG emissions among soil aggregates is incomplete.

Materials and methods

Here, we conducted an incubation experiment to explore the effects of soil aggregate size and N addition on GHG emissions. The soil aggregate samples (0–10 cm) were collected from two 6-year N addition experiment sites with different vegetation types (mixed Korean pine forest vs. broad-leaved forest) in Northeast China. Carbon dioxide (CO₂), nitrous oxide (N₂O), and methane (CH₄) production were quantified from the soil samples in the laboratory using gas chromatography with 24-h intervals during the incubation (at 20 °C for 168 h with 80 % field water capacity).

Results and discussion

The results showed that the GHG emission/uptake rates were significantly higher in the micro-aggregates than in the macro-aggregates due to the higher concentration of soil bio-chemical properties (DOC, MBC, NO₃ ^?, NH₄ ⁺, SOC and TN) in smaller aggregates. For the N addition treatments, the emission/uptake rates of GHG decreased after N addition across aggregate sizes especially in mixed Korean pine forest where CO₂ emission was decreased about 30 %. Similar patterns in GHG emission/uptake rates expressed by per soil organic matter basis were observed in response to N addition treatments, indicating that N addition might decrease the decomposability of SOM in mixed Korean pine forest. The global warming potential (GWP) which was mainly contributed by CO₂ emission (>98 %) decreased in mixed Korean pine forest after N addition but no changes in broad-leaved forest.

Conclusions

These findings suggest that soil aggregate size is an important factor controlling GHG emissions through mediating the content of substrate resources in temperate forest ecosystems. The inhibitory effect of N addition on the GHG emission/uptake rates depends on the forest type.

     

Bacterial community incorporating carbon derived from plant residue in an anoxic non-rhizosphere soil estimated by DNA-SIP analysis

Purpose

Plant residues are one of the main sources of soil organic matter in paddy fields, and elucidation of the bacterial communities decomposing plant residues was important to understand their function and roles, as the microbial decomposition of plant residues is linked to soil fertility. We conducted a DNA stable isotope probing (SIP) experiment to elucidate the bacterial community assimilating 13-carbon (¹³C) derived from plant residue under an anoxic soil condition. In addition, we compared the bacterial community with that under the oxic soil condition, which was elucidated in our previous study (Lee et al. in Soil Biol Biochem 43:814–822, 2011).

Materials and methods

We used the ¹³C-labeled dried rice callus cells as a model of rice plant residue. A paddy field soil was incubated with unlabeled and ¹³C-labeled callus cells. DNA extracted from the soils was subjected to buoyant density gradient centrifugation to fractionate ¹³C-enriched DNA. Then, polymerase chain reaction (PCR) and denaturing gradient gel electrophoresis (DGGE) analysis of bacterial 16S rDNA band patterns and band sequencing method were used to evaluate bacterial community.

Results and discussion

DGGE analysis showed that the band patterns in the ¹³C-enriched fractions were distinctly changed over time, while the changes in the community structure before fractionation were minor. Sequencing of the ¹³C-labeled DGGE bands revealed that Clostridia were a major group in the bacterial communities incorporating the callus-derived carbon although Gram-negative bacteria, and Actinobacteria also participated in the carbon flow from the callus under the anoxic condition. The proportion of Gram-negative bacteria and Actinobacteria increased on 14 days after the onset of incubation, suggesting that the callus was decomposed by diverse bacterial members on this phase. When the bacterial groups incorporating the ¹³C were compared between under anoxic and oxic soil conditions, the composition was largely different under the two opposite conditions. However, some members of Gram-negative bacteria were commonly found under the anoxic and oxic soil conditions.

Conclusions

The majority of bacterial members assimilating the callus carbon was Clostridia in the soil under anoxic conditions. However, several Gram-negative bacterial members, such as Acidobacteria, Bacteroidetes, and Proteobacteria, also participated in the decomposition of callus under anoxic soil conditions. Our study showed that carbon flow into the diverse bacterial members during the callus decomposition and the distinctiveness of the bacterial communities was formed under the anoxic and oxic soil conditions.

     

Circulating oxidative stress status in dromedary camels infested with sarcoptic mange

Oxidative stress is an imbalance between radical-generating and radical-scavenging activity, resulting in oxidation products and tissue damage. This study was aimed to evaluate the status of oxidative stress indices in blood of camels naturally infested with S. scabiei. Forty-seven male camels (Camelus dromedaries) were divided according to the extent of the infested area with Sarcoptes scabiei into four groups, mild (MID, n = 12), moderate (MOD, n = 10), severely infested (SEV, n = 10) and healthy control group (n = 15). Blood was used for determination of red cell count (RBC), hemoglobin (Hb), packed cell volume (PCV), serum nitric oxide (NO^•, a free radical), ascorbate and albumin concentrations, and erythrocytic values of malondialdehyde (MDA, a marker of lipid peroxidation), protein carbonyls (PC, an indicator of protein oxidation), glutathione (GSH) superoxide dismutase (SOD) and catalase (CAT). Decreased levels (P < 0.05) of RBC, Hb, PCV, albumin and ascorbate were noticed in MOD and SEV compared to controls with the lowest values (P < 0.05) in SEV except for ascorbate, where MOD did not differ from SEV. Compared to controls, NO^• gradually increased (P < 0.05) in MID followed by MOD and SEV, whereas MDA and PC were higher (P < 0.05) in MOD and SEV. PC was higher (P < 0.05) in MOD than SEV. In addition, the antioxidants GSH, SOD and CAT were higher (P < 0.05) in MID and lower (P < 0.05) in MOD and SEV compared to controls. GSH was lower (P < 0.05) in SEV compared to MOD. Besides, Hb was negatively correlated with NO^• (r = −0.68, P < 0.001), MDA (r = −0.53, P < 0.001) and PC (r = −0.73, P < 0.001). In conclusion, dromedary sarcoptosis is accompanied by a state of oxidative stress process, which increased by increasing the area of infestation, and may contribute to the pathogenesis of the disease.     

Sources and seasonal dynamics of inoculum for brown spot disease of pear

The dynamics of the production of Stemphylium vesicarium conidia and Pleospora allii ascospores from different inoculum sources on the ground were compared in a model system of a wildflower meadow mainly composed of yellow foxtail, creeping cinquefoil and white clover. The meadow was either inoculated (each October) or not inoculated with a virulent strain of S. vesicarium, and either covered or not covered with a litter of inoculated pear leaves. Spore traps positioned a few centimetres above the ground were exposed for 170 7-day periods between October 2003 and December 2006. Ascospores and conidia were trapped in 46 and 25% of samples, respectively. Ascospore numbers trapped from the pear leaf litter were about five times higher than those from the meadow, while conidial numbers were similar from the different inoculum sources. The ascosporic season was very long, with two main trapping periods: December–April, and August–October; the former was most important for the leaf litter, the latter for the meadow. The conidial season lasted from April to November, with 92% of conidia caught between July and September. The fungus persistently colonized the meadow: the meadow inoculated in early October 2003 produced spores until autumn 2006. The present work demonstrates that orchard ground is an important source of inoculum for brown spot of pear. Thus, it is important to reduce inoculum by managing the orchard ground all year long.     

Climate change affects soil labile organic carbon fractions in a Tibetan alpine meadow

Purpose

Changes in bioactive soil C pools and their temperature sensitivities will dominate the fate of soil organic C in a warmer future, which is not well understood in highland ecosystems. This study was conducted in order to evaluate climate change, especially cooling effects, on soil labile organic C (LOC) pools in a Tibetan alpine meadow.

Materials and methods

A short-term reciprocal translocation experiment was implemented to stimulate climate warming (downward translocation) and cooling (upward translocation) using an elevation gradient on the Tibetan Plateau. Variations in soil microbial biomass C (MBC), dissolved organic C (DOC) and LOC were analyzed.

Results and discussion

Over the range of soil temperature from 0.02 to 5.5 °C, warming averagely increased soil MBC, DOC and LOC by 15.3, 17.0 and 3.7 % while cooling decreased them by 11.0, 11.9 and 3.2 %, respectively. Moreover, warming generally increased the proportion of DOC in LOC but cooling had an opposite effect, while the response of the MBC proportion to DOC and LOC varied depending on vegetation type. Soil MBC, DOC and LOC pools were positively related to soil temperature and showed a hump-shaped relationship with soil moisture with a threshold of about 30–35 %. Although soil DOC was more sensitive to warming (5.1 % °C^?1) than to cooling (3.0 % °C^?1), soil LOC showed a symmetrical response due to regulation by soil moisture.

Conclusions

Our results indicated that climate change would not only change the size of soil LOC pools but also their quality. Therefore, cooling effects and regulation of soil moisture should be considered to evaluate the fate of soil organic C in Tibetan alpine meadows in a warmer future.

     

Treatment additives reduced arsenic and cadmium bioavailability and increased 1,2-dichloroethane biodegradation and microbial enzyme activities in co-contaminated soil

Purpose

Bioremediation of co-contaminated environments is difficult because of the mixed nature of the contaminants and the fact that the two components often must be treated differently. This study investigated the use of inorganic treatment additives, namely calcium carbonate (CaCO₃), gypsum (CaSO₄·2H₂O), and disodium phosphate (Na₂HPO₄) to improve remediation of soil co-contaminated with 1,2-dichloroethane (1,2-DCA) and arsenic or cadmium.

Materials and methods

The soil samples were collected from a specific site in the Westville area in Durban, KwaZulu-Natal, South Africa. Microcosms were set up by artificially co-contaminating the soil sample (100 g mixed with 75 ml of synthetic groundwater in sterile screw-capped 250-ml serum bottles) with 1,2-DCA + risk elements; As³⁺ (150 mg/kg); or Cd²⁺ (170 mg/kg). Thereafter, each microcosm was amended with either 5 g CaCO₃, 2 g CaSO₄·2H₂O, or 1.12 g Na₂HPO₄ + 0.046 g NaCl, separately. The samples were analyzed for the degradation of 1,2-DCA using GC–MS, while total 1,2-DCA degrading bacterial populations were determined at different sampling times using a standard spread plate technique. Soil dehydrogenase and urease activities were also monitored during the experimental period using standard enzyme assays.

Results and discussion

Addition of CaCO₃ resulted in an approximately 2-fold increase in 1,2-DCA degradation in both the As³⁺ and the Cd²⁺ co-contaminated soil as compared to the co-contaminated soil without CaCO₃. All the treatment additives were more effective in the As³⁺ co-contaminated soil resulting in 11.19, 9.25, and 5.63% increase in 1,2-DCA degradation in the presence of CaCO₃, Na₂HPO₄ + NaCl, and CaSO₄·2H₂O, respectively, compared to the Cd²⁺ co-contaminated soil. The total 1,2-DCA degrading bacterial population increased in treated soils over time. Overall, soil dehydrogenase and urease activities were lower in the heavy metal co-contaminated samples compared to the treated soil. The inhibitory effect of heavy metal was less in As³⁺ co-contaminated soil for both CaCO₃- and Na₂HPO₄ + NaCl-treated soil, with up to 7.92% increase in dehydrogenase activity obtained compared to soil co-contaminated with Cd²⁺.

Conclusions

Results from this study indicate that treatment additives can be used to reduce bioavailable fractions of risk elements in the soil matrices, thereby limiting the toxicity of these risk elements to 1,2-DCA degrading microorganisms. Thus, this approach can be applied to enhance organic compound degradation in co-contaminated soil environments.

     

Identification and characterization of EST-SSRs in finger millet (<Emphasis Type="Italic">Eleusine coracana</Emphasis> (L.) Gaertn.)

In recent years, microsatellites have become the most used markers for studying population genetic diversity. The increased availability of the DNA sequences has given the possibility to develop EST-derived SSR markers. A total of 1,927 ESTs of Eleusine coracana available in the NCBI database were mined for SSRs. Di-nucleotides are the most occurring motifs accounting for more than 50% of the repeats, of which GA was the most abundant motif and tetra-nucleotides are the least occurring motifs. Of the 132 markers identified, 30 primer pairs based were synthesized. SSR markers were used for variety discrimination and genetic assessment in 15 finger millet accessions; 20 primers showed polymorphism and 13 primers were identified as having a PIC value above 0.5. On the basis of the distribution of these polymorphic alleles, the 15 accessions were classified into two groups. This study has demonstrated the potential of EST-derived SSR primer pairs in finger millet. These primers will serve as valuable source for further breeding programs.     

Phenotypic segregation and relationships of agronomic traits in Monastrell × Syrah wine grape progeny

The aim of this work was to study the phenotypic segregation of different agronomic and fruit quality traits, and their relationships, in Monastrell × Syrah wine grape progeny. Twenty-two agronomic traits were evaluated and compared for three consecutive years in this progeny. The results show the phenotypic diversity existing in a cross between two different wine grape cultivars. Most of the phenological, productive, morphological, and enological parameters evaluated displayed continuous variation within the progeny, suggesting a polygenic inheritance. Some correlations between traits were detected by the Spearman correlation test, although high coefficients were not found for most of them. Cluster analysis of the progeny grouped the hybrids based on criteria with significance for wine grape breeding. Also, we investigated the relationship between the skin color and total content of anthocyanins with the VvmybA genotype, using the CAPS (Cleaved Amplified Polymorphic Sequence) marker 20D18CB9. The results show that hybrids with two copies of the functional color allele tend to have increased anthocyanins content. Based on this study, 14 genotypes were pre-selected from the breeding population for additional quality studies.