Acceleration of emergence of bacterial antibiotic resistance in connected microenvironments

The emergence of bacterial antibiotic resistance is a growing problem, yet the variables that influence the rate of emergence of resistance are not well understood. In a microfluidic device designed to mimic naturally occurring bacterial niches, resistance of Escherichia coli to the antibiotic ciprofloxacin developed within 10 hours. Resistance emerged with as few as 100 bacteria in the initial inoculation. Whole-genome sequencing of the resistant organisms revealed that four functional single-nucleotide polymorphisms attained fixation. Knowledge about the rapid emergence of antibiotic resistance in the heterogeneous conditions within the mammalian body may be helpful in understanding the emergence of drug resistance during cancer chemotherapy.     

Using near-infrared hyperspectral images on subalpine fir board. Part 1: Moisture content estimation

Abstract

In this study, moisture content (MC) images of subalpine fir (abies lasiocarpa Hook) boards were derived from near-infrared hyperspectral images in the 947–1637 nm range. One hundred and seven cubic samples with the size of 4 cm were prepared from 14 boards. All samples were dried to various MCs during several steps until being completely dried. Hyperspectral images and weight measurements were acquired over each sample at each drying step. The samples have MC ranging from 1% to 137% (dry basis). The images were first calibrated into reflectance. Then, bad pixels were found and replaced by a corrected value using a median filter. A modified version of the boxplot method was used to find abnormal spectra that were then removed. The remaining spectra were converted into absorbance spectra. They were then split into a calibration and a validation data-set according to the boards they were extracted from to build and validate a partial least squares (PLS) regression model between the near-infrared absorbance spectra and the measured MCs. The PLS model was applied first to the sample images, then to the whole board images in order to produce 2D images of MC.     

Diallel analyses reveal the genetic control of resistance to ascochyta blight in diverse chickpea and wild Cicer species

Ascochyta blight is a major fungal disease affecting chickpea production worldwide. The genetics of ascochyta blight resistance was studied in five 5 × 5 half-diallel cross sets involving seven genotypes of chickpea (ICC 3996, Almaz, Lasseter, Kaniva, 24B-Isoline, IG 9337 and Kimberley Large), three accessions of Cicer reticulatum (ILWC 118, ILWC 139 and ILWC 184) and one accession of C. echinospermum (ILWC 181) under field conditions. Both F₁ and F₂ generations were used in the diallel analysis. The disease was rated in the field using a 1–9 scale. Almaz, ICC 3996 and ILWC 118 were the most resistant (rated 3–4) and all other genotypes were susceptible (rated 6–9) to ascochyta blight. Estimates of genetic parameters, following Hayman’s method, showed significant additive and dominant gene actions. The analysis also revealed the involvement of both major and minor genes. Susceptibility was dominant over resistance to ascochyta blight. The recessive alleles were concentrated in the two resistant chickpea parents ICC 3996 and Almaz, and one C. reticulatum genotype ILWC 118. The wild Cicer accessions may have different major or minor resistant genes compared to the cultivated chickpea. High narrow-sense heritability (ranging from 82% to 86% for F₁ generations, and 43% to 63% for F₂ generations) indicates that additive gene effects were more important than non-additive gene effects in the inheritance of the trait and greater genetic gain can be achieved in the breeding of resistant chickpea cultivars by using carefully selected parental genotypes.     

Comparison of rapid diagnostic tests to detect <Emphasis Type="Italic">Mycobacterium avium</Emphasis> subsp. <Emphasis Type="Italic">paratuberculosis</Emphasis> disseminated infection in bovine liver

Mycobacterium avium subsp. paratuberculosis (MAP) causes Johne’s disease, a chronic enteritis in cattle and other domestic and wild ruminants. The presence of MAP in tissues other than intestines and associated lymph nodes, such as meat and liver, is a potential public health concern. In the present study, the relationship between the results of rapid diagnostic tests of the Johne’s disease, such as serum ELISA, rectal scraping PCR, and acid-fast staining, and the presence of MAP in liver was evaluated. Blood, liver, and rectal scraping samples were collected from 200 slaughtered cattle with unknown Johne’s disease status. ELISA was performed to determine the MAP antibody activity in the serum. Acid-fast staining was performed on rectal scraping samples, and PCR was performed on rectal scraping and liver samples. PCR-positive liver samples were used for mycobacterial culture. Overall, the results of this study demonstrated that MAP can be detected and cultured from liver of slaughtered cattle and rapid diagnostic tests of Johne’s disease have limited value in detecting cattle with MAP infection in liver. These findings show that the presence of MAP in liver tissue may occur in cows with negative results for rapid diagnostic tests and vice versa. Hence, liver might represent another possible risk of human exposure to MAP. Given concerns about a potential zoonotic role for MAP, these results show the necessity to find new methods for detecting cattle with MAP disseminated infection.     

Histomorphometrical and stereological study of the oesophagus in the adult male Persian squirrel (Sciurus anomalus)

The Persian squirrel (Sciurus anomalus) is habitat in the Middle East countries and feed on pine acorns and other seeds. The present study was carried out to investigate the histological and volumetric features of the oesophagus in Persian squirrels. Five adult male Persian squirrels were included in the study. The cervical, thoracic and abdominal oesophagus of all subjects were processed routinely and sectioned in a serial manner. Then, the total volume of the oesophagus and its different layers were estimated using Cavalieri's principle. Histological assessment revealed a non‐keratinized stratified squamous epithelium lining the mucosa. No glands were seen in the lamina propria and submucosa. Lamina muscularis was present as a distinct layer of smooth muscle cells separating the lamina propria from the tunica submucosa. The tunica muscularis consisted of two distinct layers of striated muscle fibres: inner circular and outer longitudinal that was intermingled with few scattered smooth muscle fibres especially in the abdominal region. The thoracic region contained more amount of the lamina muscularis and tunica muscularis in comparison to the cervical or abdominal regions. The obtained results revealed that the histological structure of the Persian squirrel oesophagus has differences and similarities with other rodents and even with other species of squirrel. These findings would be useful to improve the knowledge in the areas of histological structure of the rodent digestive system.     

Productivity and water use efficiency of sweet sorghum as affected by soil water deficit occurring at different vegetative growth stages

The growth and production of sweet sorghum [Sorghum bicolor (L.) Moench] crops under semi-arid conditions in the Mediterranean environment of southern Italy are constrained by water stress. The effects of temporary water stress on growth and productivity of sweet sorghum were studied during three seasons at Rutigliano (Bari, Italy). The aim of this research was to evaluate the sensitivity of phenological stages subjected to the same water deficit. In a preliminary study it was observed that stomata closed when pre-dawn leaf water potential (Ψ_b) became lower than −0.4 MPa. This criterion was used in monitoring plant water status in three different plots: one never stressed and two stressed at different phenological stages (‘leaf’ and ‘stem’) when mainly leaves or stems were growing, respectively. An evaluation of the sensitivity of phenological stages subjected to identical water stress was obtained by comparing the above-ground biomass and WUE of drought crops with those of the well-irrigated crop (up to 32.5 t ha⁻¹ of dry matter and 5.7 g kg⁻¹). The sensitivity was greatest at the early stage (‘leaf’), when a temporary soil water stress reduced the biomass production by up to 30% with respect to the control and WUE was 4.8 g kg⁻¹ (average of three seasons). These results help quantify the effects of water constraints on sweet sorghum productivity. An irrigation strategy based on phenological stage sensitivity is suggested.     

Leaf type is not associated with ascochyta blight disease in chickpea (Cicer arietinum L.)

The three major leaf types in chickpea are normal compound leaf, simple leaf and multipinnate. Simple leaf types are less commonly cultivated worldwide and are often reputed to be susceptible to ascochyta blight disease, whereas other leaf types range from resistant to susceptible. This study determined the association between host plant resistance to ascochyta blight and different leaf types in segregating populations derived from crosses between disease resistant and susceptible chickpea genotypes. In addition, the inheritance of disease resistance and leaf type was investigated in intraspecific progeny derived from crosses between two resistant genotypes with normal leaf type (ICC 3996 and Almaz), one susceptible simple leaf type (Kimberley Large) and one susceptible multipinnate leaf type (24 B-Isoline). Our results showed that, in these segregating populations, susceptibility to ascochyta blight was not linked to multipinnate or simple leaf types; resistance to ascochyta blight depended more on genetic background than leaf shape; leaf type was controlled by two genes with a dihybrid supplementary gene action; normal leaf type was dominant over other leaf types; and inheritance of ascochyta blight resistance was controlled by two major genes, one dominant and one recessive. Since there was no linkage between ascochyta blight susceptibility and leaf type, breeding various leaf types with ascochyta blight resistance is a clear possibility. These results have significant implications for chickpea improvement, as most current extra large seeded kabuli varieties have a simple leaf type.     

Analysis of the effect of ozone on soybean in the Mediterranean region: I. The consequences on crop-water status

This study was carried out over three successive years (2003–2004–2005) in the southern Mediterranean region of Europe. Soybean plants were subjected to well-watered and water-stress conditions, and three levels of ozone (zero, low and high) in open top chambers (OTC) during the growing seasons.

The paper has four objectives: (i) to reproduce in OTCs the ozone concentrations actually observed in the field; (ii) to analyze the effect of ozone on well-watered crops by comparing a “control” (OTC ozone filtered treatment) with two ozone levels (at the end of the soybean growing seasons accumulated AOT40 values were 3400 and 9000 ppb h for low and high ozone treatments, respectively); observations were carried out both at leaf scale (stomatal conductance) and at canopy scale (determination of daily evapotranspiration, AET); (iii) to take into consideration the effect of drought, where the leaf and canopy scale observations were also implemented on water-stressed crops; and (iv) to analyze and verify the reliability of the ozone exposure–plant response relationship.

In well-watered conditions, an increase in ozone concentration levels reduced stomatal conductance and AET. Reductions in AET were 14% and 28% at low and high ozone levels, respectively, as compared to the control treatment. Hence, the results of daily AET were consistent with stomatal conductance results.

In water stress conditions, on the contrary, an increase in ozone had no effect on stomatal conductance and AET.

During the 3-year study, significant relationships were found between AOT40 and relative (low or high to control ozone treatment) values of stomatal conductance and AET in well-watered conditions. The reliability observed for these relationships suggest that they will be useful in soybean growth and yield-prediction models.     

Chemometrics Approaches to Monitoring of Biogenic Amines Changes in Three Fish Species

The biogenic amine contents in fillets of three freshwater fish of kutum (Rutilus frisii), common carp (Cyprinus carpio), and Caspian salmon (Salmon caspius) were monitored during storage at 4°C for 20 days. The amounts of biogenic amines were determined at regular intervals using high performance liquid chromatography after derivatization with benzoyl chloride. Significant differences in the levels of selected biogenic amines among the fish samples were found (p < 0.05) during storage times. While the amount of putrescine, cadaverine, histamine, and tyramine in the fish fillets increased during the storage time, the changes in spermine and spermidine contents of the fish species were minor and both showed low and inverse correlations with storage time. For each of the three fish species, the sensory acceptability limit was found to be 4–8 days. The quality and biogenic amine indices of fish samples showed high correlation with storage time (r > 0.9). The principal component analysis of the results indicated that the formation of biogenic amines displays a certain behavioral pattern in all fish samples.