Matrix assisted laser desorption ionization–time of flight (MALDI-TOF) mass spectrometry for identification of plant pathogenic Alternaria species

Identification of microorganisms by intact cell matrix-assisted laser desorption ionization–time-of-flight mass spectrometry (MALDI-TOF MS) is an emerging technology. In this work, intact MALDI-TOF MS was applied for rapid identification of plant pathogenic Alternaria species based on analysis of protein markers. An analysis of 60 isolates belonging to 12 Alternaria spp. showed characteristic protein finger prints that were specific at species level. When mass fragment data were subjected to partial least squares regression (PLS-R), all these 12 species formed separate groups. The method therefore permits rapid and direct identification of Alternaria spp. from small quantities of fungal mycelium.     

Clonal Propagation of Dioscorea Floribunda by Tissue Culture

A tissue culture method for rapid clonal multiplication of Dioscorea floribunda Mart and Gal. is described. Nodal segments were used as initial explants. Plantlets were obtained on Murashige and Skoog’s basal medium supplemented with 2 ppm kinetin with or without 0·2 ppm a-napthaleneacetic acid.     

Recombinant mid gut antigen (Bm95) as a vaccine against Indian Rhiphicephalus haemaphysaloides in Bos indicus cattle

In the present study, we report for the first time the efficacy of recombinant Bm95 mid gut antigen isolated from an Argentinean strain of Rhipicephalus microplus strain A in controlling the tick infestations in India. The synthetic gene for Bm95 optimized for expression in yeast was obtained and used to generate yeast transformants expressing Bm95 which was purified to apparent homogeneity. Liquid chromatography-mass spectrometry analysis of the purified protein confirmed its identity as Bm95. Vaccine was prepared by blending various concentrations of purified Bm95 with aluminium hydroxide as an adjuvant. Immunogenicity studies of the vaccine in rabbits and cattle indicated that the vaccine was highly immunogenic. The efficacy studies of the vaccine was done in cattle. Naïve Bos indicus cattle were vaccinated with the recombinant vaccine and were challenged with the larval, nymphal and adult forms of Rhiphicephalus haemaphysaloides. The vaccine protected the animals from larval, nymph and adult tick challenges with an efficacy of 98.7%, 84.6% and 78.9% respectively. The results obtained from the above studies clearly demonstrated the advantage and possibilities of the use of Bm95 in controlling R. haemaphysaloides infestations in the field.     

Role of beneficial microbial gene pool in mitigating salt/nutrient stress of plants in saline soils through underground phytostimulating signalling molecules

Soil salinity diminishes soil health and reduces crop yield, which is becoming a major global concern. Salinity stress is one of the primary stresses, leading to several other secondary stresses that restrict plant growth and soil fertility. The major secondary stresses induced in plants under saline-alkaline conditions include osmotic stress, nutrient limitation, and ionic stress, all of which negatively impact overall plant growth. Under stressed conditions, certain beneficial soil microflora ...     

Agro-morphological variation in “Jhinuwa” rice landraces (Oryza sativa L.) of Nepal

Jhinuwa is an aromatic rice (Oryza sativa L.) landrace from the Pokhara Valley of Nepal. A total of 210 accessions comprising seven types of Jhinuwa rice landraces were randomly collected from the rice fields to evaluate inter- and intra-population variability based on agro-morphological traits. The experiment was conducted in factorial randomized complete block design with three replicates in 2005. The first six principal components (PCs) accounted for 76.6 % variation for agro-morphological traits. Major traits that accounted for the variation by six PCs includes days to heading, days to maturity, total grain panicle^?1, fertile grain panicle^?1, culm length, panicle length, milling recovery, head rice recovery, aroma, 1,000 grain weight, sterile grain panicle^?1, grain sterility %, and leaf characteristics. Both principal coordinate analysis and cluster analyses revealed four phenotypic groups, two of which represent Bayarni, Jhinuwa, and Biramphul while the other two account for Tunde and Pakho Tunde. Tunde, Pakho Tunde, Kalo Bayarni, and Seto Bayarni showed higher intra- as well as inter-population variation compared to other populations. The phenotypic and genotypic coefficients of variation, broad sense heritability (h ²B) and genetic advance (GA) as a percent of the mean assessed for 210 accessions revealed high h ²B and GA estimates for leaf width, leaf length breadth ratio, ligule length, sterile grain panicle^?1, grain sterility % and 1,000 grain weight. The current study demonstrates that improvement in Jhinuwa rice landrace is possible by selecting superior accessions from existing natural populations while selection should be focussed to market traits with higher h ²B and GA estimates.     

Effect of consumption of finger millet on hyperglycemia in non-insulin dependent diabetes mellitus (NIDDM) subjects

The effect of consumption of finger millet based diets on hyperglycemiawas studied in 6 noninsulin dependent diabetes mellitus (NIDDM) subjects.All the experimental diets were planned to be isocaloric and also tocontain 75 g equivalent of carbohydrate load so that glycemic responsecould be compared with a 75 g glucose load. The glycemic response tobreakfast items compared to that of glucose was determined by comparingthe areas under the 2 hr glucose response curve. Consumption of fingermillet based diets resulted in significantly lower plasma glucose levels,mean peak rise, and area under curve which might have been due to thehigher fiber content of finger millet compared to rice and wheat. Thelower glycemic response of whole finger millet based diets may also havebeen due to the presence of antinutritional factors in whole finger milletflour which are known to reduce starch digestibility and absorption.     

Physical and hydraulic properties of baked ceramic aggregates used for plant growth medium.

Baked ceramic aggregates (fritted clay, arcillite) have been used for plant research both on the ground and in microgravity. Optimal control of water and air within the root zone in any gravity environment depends on physical and hydraulic properties of the aggregate, which were evaluated for 0.25-1-mm and 1-2-mm particle size distributions. The maximum bulk densities obtained by any packing technique were 0.68 and 0.64 g cm-3 for 0.25-1-mm and 1-2-mm particles, respectively. Wettable porosity obtained by infiltration with water was approximately 65%, substantially lower than total porosity of approximately 74%. Aggregate of both particle sizes exhibited a bimodal pore size distribution consisting of inter-aggregate macropores and intra-aggregate micropores, with the transition from macro- to microporosity beginning at volumetric water content of approximately 36% to 39%. For inter-aggregate water contents that support optimal plant growth there is 45% change in water content that occurs over a relatively small matric suction range of 0-20 cm H2O for 0.25-1-mm and 0 to -10 cm H2O for 1-2-mm aggregate. Hysteresis is substantial between draining and wetting aggregate, which results in as much as a approximately 10% to 20% difference in volumetric water content for a given matric potential. Hydraulic conductivity was approximately an order of magnitude higher for 1-2-mm than for 0.25-1-mm aggregate until significant drainage of the inter-aggregate pore space occurred. The large change in water content for a relatively small change in matric potential suggests that significant differences in water retention may be observed in microgravity as compared to earth.     

Alterations in activated T‐cell cytokine expression in healthy dogs over the initial 7 days of twice daily dosing with oral cyclosporine

Cyclosporine is a powerful T‐cell inhibitor used in the treatment of immune‐mediated and inflammatory diseases in the dog. There is limited information on how to best monitor patients on cyclosporine therapy. Currently, pharmacokinetic and pharmacodynamic assays are available. Pharmacokinetic assays that measure the concentration of cyclosporine in the blood are used to assess if an appropriate drug concentration has been achieved; however, target blood drug concentrations have not been shown to reliably correlate with suppression of T‐cell function in the dog. In human transplant recipients, therapeutic drug monitoring has shifted to include pharmacodynamic‐based monitoring. Our laboratory has validated a RT‐qPCR assay to measure the pharmacodynamic effects of cyclosporine in the dog. In this study, activated T‐cell expression of IL‐2 and IFN‐γ was measured using RT‐qPCR daily for 7 consecutive days in 8 healthy Walker hounds receiving oral cyclosporine at a dosage of 10 mg/kg every 12 hr. Cytokine production was found to be markedly decreased within 24 hr after the initiation of cyclosporine and remained significantly decreased for the duration of the project. Based on these results, cyclosporine causes a rapid drop in T‐cell cytokine production that is sustained with continued dosing in healthy dogs. Although performed in healthy dogs, this study demonstrated a marked decrease in cytokine suppression within 24 hr of drug administration, suggesting that pharmacodynamic monitoring of cyclosporine's effects on T cells could be considered within several days of commencing therapy in dogs suffering from life‐threatening immune‐mediated disorders.     

Increased production of green mussels (Perna viridis) using longline culture and an economic comparison with stake culture on the north coast of Java,Indonesia

The effectiveness of green mussel (Perna viridis) cultivation was compared between longline culture and the traditional bamboo stake method using different mussel densities in a rural area on the north coast of Java, Indonesia. The study took place in a rural area about 2 km north‐east from the city of Semarang where unsustainable shrimp and fish pond culture in the past has led to massive mangrove loss, spiralling environmental degradation and socio‐economic disintegration. Mangrove‐friendly alternatives for a sustainable socio‐economic recovery of local livelihoods are urgently being sought. Longlines were more successful than the stake method in spat collection. Longlines also showed a small but significantly higher relative weight gain and specific growth rate for mussels than bamboo stakes. Mussels in lower densities showed higher survival and grew to larger individual sizes, but initial seeding density had no significant effect on relative weight gain or specific growth rate per stocking. Slightly lower set‐up costs and time investment and somewhat higher yields for longlines give an almost twofold higher income per time unit of own time invested by the farmer for longline culture over the traditional stake culture method. The profitability of mussel culture using the stake method is below the average hourly wage for skilled labour, but above that when using the longline method. We conclude that green mussel culture using the longline system is feasible as an alternative to less sustainable forms of livelihood for the local communities in mangrove areas.     

Biodegradation of Congo Red Azo Dye by Aspergillus spp,Isolated from Dye Contaminated Soils

In the present study, it has been aimed to determine the non target effects of Congo red on soil enzyme activities namely amylase, protease, catalase, glucose oxidase and laccases, following the standard procedures. Further, it is also aimed to decolourize the dye effluents by using immobilized fimgal cultures namely Aspergillus spp. isolated from textile effluents and estimate the percentage of decolourization by dye decolourization assay method. The selected fungi were found efficient and dominant type in dye decolourization with the production of laccase and other enzymes. Except laccase, all the enzymes showed maximum activity at 14 days followed by declining trend at 21 days. Maximum enzyme activity was noticed with Aspergillus niger. 95% of decolourization was found within 4-24 h in sodium alginate immobilized fungal cultures compared to controls. The above results clearly indicate the efficiency of these fungi in selective bioremediation of dye contaminated sites.