Using ecological trajectories to track long-term taxonomic and functional changes in benthic shallow soft-bottom communities (Bay of Saint-Brieuc,English Channel)

1. Taxonomic and functional trajectories of benthic assemblages were studied in shallow soft-bottom sediments in the bay of Saint-Brieuc (Western English Channel). Changes were assessed at different spatial and temporal scales using a macrobenthic dataset based on 38 stations sampled in 1987 and 2019, coupled with data from one station sampled annually between 2005 and 2019 as part of the European Water Framework Directive monitoring programme.
2. Taxonomic trajectories indicated 1) changes in the structure and distribution of benthic assemblages, 2) an homogenization of the assemblages, and 3) significant functional shifts.
3. Fishing activities and nutrient enrichment are probably strong drivers of the observed changes, as suggested by the higher mortality rate of fragile, flexible, tubiculous and burrowing species, and the increase in the abundance of opportunistic species in the assemblages. Certain populations of macroinvertebrates seem jointly controlled by climate change and by the aforementioned local factors of disturbance.
4. The Community Trajectory Analysis framework appears as a new and interesting method to track ecological changes in marine ecosystems by measuring change with respect to a baseline state, to help define ecological recovery (station returning to the initial ecological state) and departure (station presenting increased changes over time), and to analyse trajectory similarity.
5. According to the degradation of habitat over time, we identify the need for the implementation of knowledge-based conservation strategies, especially within Natura 2000 sites.

     

Indirect host effect on ectomycorrhizal fungi: Leaf fall and litter quality explain changes in fungal communities on the roots of co-occurring Mediterranean oaks

Host trees can modify their soil abiotic conditions through their leaf fall quality which in turn may influence the ectomycorrhizal (ECM) fungal community composition. We investigated this indirect interaction using a causal modelling approach. We identified ECM fungi on the roots of two coexisting oak species growing in two forests in southern Spain - Quercus suber (evergreen) and Quercus canariensis (winter deciduous)-using a PCR-based molecular method. We also analysed the leaf fall, litter and soil sampled beneath the tree canopies to determine the concentrations of key nutrients. The total mycorrhizal pool was comprised of 69 operational taxonomic units (OTUs). Tomentella and Russula were the most species-rich, frequent and abundant genera. ECM fungi with epigeous and resupinate fruiting bodies were found in 60% and 34% of the identified mycorrhizas, respectively. The calcium content of litter, which was significantly higher beneath the winter-deciduous oak species due to differences in leaf fall quality, was the most important variable for explaining ECM species distribution. The evaluation of alternative causal models by the d-sep method revealed that only those considering indirect leaf fall-mediated host effects statistically matched the observed covariation patterns between host, environment (litter, topsoil, subsoil) and fungal community variables.     

Energy and protein requirements for maintenance and growth of Boer crossbred kids

Meat production by goats has become an important livestock enterprise in several parts of the world. Nonetheless, energy and protein requirements of meat goats have not been defined thoroughly. The objective of this study was to determine the energy and protein requirements for maintenance and growth of 34 (3/4) Boer x (1/4) Saanen crossbred, intact male kids (20.5 +/- 0.24 kg of initial BW). The baseline group was 7 randomly selected kids, averaging 21.2 +/- 0.36 kg of BW. An intermediate group consisted of 6 randomly selected kids, fed for ad libitum intake, that were slaughtered when they reached an average BW of 28.2 +/- 0.39 kg. The remaining kids (n = 21) were allocated randomly on d 0 to 3 levels of DMI (treatments were ad libitum or restricted to 70 or 40% of the ad libitum intake) within 7 slaughter groups. A slaughter group contained 1 kid from each treatment, and kids were slaughtered when the ad libitum treatment kid reached 35 kg of BW. Individual body components (head plus feet, hide, internal organs plus blood, and carcass) were weighed, ground, mixed, and subsampled for chemical analyses. Initial body composition was determined using equations developed from the composition of the baseline kids. The calculated daily maintenance requirement for NE was 77.3 +/- 1.05 kcal/kg(0.75) of empty BW (EBW) or 67.4 +/- 1.04 kcal/kg(0.75) of shrunk BW. The daily ME requirement for maintenance (118.1 kcal/kg(0.75) of EBW or 103.0 kcal/kg(0.75) of shrunk BW) was calculated by iteration, assuming that the heat produced was equal to the ME intake at maintenance. The partial efficiency of use of ME for NE below maintenance was 0.65. A value of 2.44 +/- 0.4 g of net protein/kg(0.75) of EBW for daily maintenance was determined. Net energy requirements for growth ranged from 2.55 to 3.0 Mcal/kg of EBW gain at 20 and 35 kg of BW, and net protein requirements for growth ranged from 178.8 to 185.2 g/kg of EBW gain. These results suggest that NE and net protein requirements for growing meat goats exceed the requirements previously published for dairy goats. Moreover, results from this study suggest that the N requirement for maintenance for growing goats is greater than the established recommendations.     

Toll-like receptor 3 (TLR3): a new marker of canine monocytes-derived dendritic cells (cMo-DC)

Toll-like receptors (TLRs) are a family of functionally important receptors for recognition of pathogen-associated molecular pattern (PAMP) since they trigger the pro-inflammatory response and upregulation of costimulatory molecules, linking the rapid innate response to adaptative immunity. In human leukocytes, TLR3 has been found to be specifically expressed in dendritic cells (DC). This study examined the expression of TLR3 in canine monocytes-derived DC (cMo-DC) and PBMC using three new anti-TLR3 mAbs (619F7, 722E2 and 713E4 clones). The non-adherent cMo-DC generated after culture in canine IL-4 plus canine GM-CSF were labelled with the three anti-TLR3 clones by flow cytometry, with a strong expression shown for 619F7 and 722E2 clones. By contrast, TLR3 expression was low to moderate in canine monocytes and lymphocytes. These results were confirmed by Western blot using 619F7 and 722E2 clones and several polypeptide bands were observed, suggesting a possible cleavage of TLR3 molecule or different glycosylation states. In addition, TLR3 was detectable in immunocytochemistry by using 722E2 clone. In conclusion, this first approach to study canine TLR3 protein expression shows that three anti-TLR3 clones detect canine TLR3 and can be used to better characterize canine DC and the immune system of dogs.     

Assessment of genetic variability in grapefruits (Citrus paradisi Macf.) and pummelos (C. maxima (Burm.) Merr.) using RAPD and SSR markers

The genetic variability of 38 grapefruit (Citrus paradisi Macf.) and three pummelos (C. maxima (Burm.) Merr..) accessions was evaluated using RAPD, and single sequence repeat (SSR) analyses. Approximately49% of the 198 RAPD were polymorphic, and 4.6 alleles per SSR loci were identified. PIC values changed from 0.093 to 0.450. A UPGMA phenetic tree was constructed and two main grapefruit groups were identified. The grapefruit accessions `do Cabo' and `Siamesa-Filipinas'clustered very close to the pummelos in Group A. The Group B consisted of three sub-groups, which comprised all of the other grapefruit accessions. The majority of grapefruit accessions showed a narrow genetic base suggesting that the observed morphological polymorphism within the group must be associated with somatic mutations, which were not detected by these molecular markers. This revised version was published online in August 2006 with corrections to the Cover Date.     

Influence of oil type on the amounts of acrylamide generated in a model system and in French fries

Acrylamide formation was studied by use of a new heating methodology, based on a closed stainless steel tubular reactor. Different artificial potato powder mixtures were homogenized and subsequently heated in the reactor. This procedure was first tested for its repeatability. By use of this experimental setup, it was possible to study the acrylamide formation mechanism in the different mixtures, eliminating some variable physical and chemical factors during the frying process, such as heat flux and water evaporation from and oil ingress into the food. As a first application of this optimized heating concept, the influence on acrylamide formation of the type of deep-frying oil was investigated. The results obtained from the experiments with the tubular reactor were compared with standardized French fry preparation tests. In both cases, no significant difference in acrylamide formation could be found between the various heating oils applied. Consequently, the origin of the deep-frying vegetable oils did not seem to affect the acrylamide formation in potatoes during frying. Surprisingly however, when artificial mixtures did not contain vegetable oil, significantly lower concentrations of acrylamide were detected, compared to oil-containing mixtures.     

Changes in soil chemistry associated with the establishment of forest gardens on eroded,acidified grassland soils in Sri Lanka

Topsoil properties were determined in forest gardens established about 20 years ago on eroded grassland soils (abandoned tea lands) in the wet zone of the Sri Lankan highlands. They were compared with adjacent, eroded grasslands (abandoned tea lands) on strongly weathered soils vs soils at earlier stages of pedogenic development in a two-way analysis of variance. Soil pH in forest gardens was, on average, 6.1, nearly one unit higher than in the adjacent grasslands. In the garden soils, the cation exchange capacity (CEC measured at pH 4.8) was nearly double, exchangeable calcium concentrations five times and exchangeable magnesium three times as high as in the grasslands soils. Total soil N content was found to be nearly 40% higher in the gardens. Topsoil gravel contents in the gardens were less than half as high as in the grasslands. The increases in exchangeable bases and N in gardens, relative to grasslands, were attributed to increased nutrient retention and acquisition. Higher retention was partly due to the higher CEC_pH4.8, and probably to reduced erosion and increased, continuous fine root density in the garden topsoils. Higher field CEC in gardens was likely to result from generally higher C contents and from the reversal of acidification, presumably caused by base accumulation and decomposition processes. Our results suggest that forest garden establishment on degraded grasslands can lead to accumulation of mobile nutrients in the topsoil, probably due to increased nutrient retention, subsoil uptake and litter input exceeding nutrient uptake by the standing biomass.     

Prediction of annual tree growth and survival for thinned and unthinned even-aged maritime pine stands in Portugal from data with different time measurement intervals

An annual individual tree survival and growth model was developed for pure even-aged stands of maritime pine in Portugal, using a large data set containing irregularly time-spaced measurements and considering thinning effects. The model is distance-independent and is based on a function for diameter growth, a function for height growth and a survival function. Two approaches are compared for modeling annual tree growth. The first approach directly estimates a future diameter or height using well-known growth functions formulated in difference form. The second approach estimates diameter or height using a function in differential form estimating the increment over a year period. In both approaches, the function parameters were related to tree and stand variables reflecting the competition status of the tree as well as of a thinning response factor. Variable growth and survival rates were assumed in the modeling approaches. An iterative method was used to continuously update tree and stand attributes using a cut-off to convert the survival probability for a living or a dead tree. The individual tree diameter growth model and the survival probability model were fitted simultaneously using seemingly unrelated regression (SUR). Parameters of the height function were obtained separately as the number of observations for height was much lower than the number of observations for diameter, which may affect the statistical inference and the estimation of contemporaneous cross-equation error correlation inherent to the system of equations. PRESS residuals were used to evaluate the predictive performance of the diameter and the height growth functions. Additional statistics based in the log likelihood function and also in the survival probability were computed to evaluate the survival function. The second modeling approach, which integrates components of growth expansion and decline, performed slightly better than the first approach. A variable accounting for the thinning response that was tested proved to be significant for predicting diameter growth, even if the model already included competition-related explanatory variables, namely the basal area of trees larger than the subject tree. However, this thinning response factor was not significant for predicting height growth.     

Characterization of kafirin and zein oligomers by preparative sodium dodecyl sulfate-polyacrylamide gel electrophoresis

Quantitative and qualitative analysis of uncooked zein and kafirin fractions were performed through sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and electrophoretic profiles. Kafirins and zeins present the same oligomer and monomer compositions with the exception of a 66 kDa oligomer that is only present in kafirins. The quantitative analysis showed differences between zein and kafirin. The composition of each oligomer was established via preparative SDS-PAGE. Part of the cooked oligomers resists reduction; the presence of those oligomers could be related to the decrease on protein digestibility with the cooking process.