Association of a novel SNP in exon 10 of the IGF2 gene with growth traits in Egyptian water buffalo (Bubalus bubalis)

Insulin-like growth factor 2 (IGF2) plays an important role in muscle growth and it might be used as a marker for the growth traits selection strategies in farm animals. The objectives of this study were to detect polymorphisms in exon 10 of IGF2 and to determine associations between these polymorphisms and growth traits in Egyptian water buffalo. PCR-single-strand conformation polymorphism (SSCP) and DNA sequencing methods were used to detect any prospective polymorphism. A novel single nucleotide polymorphism (SNP), C287A, was detected. It was a non-synonymous mutation and led to replacement of glutamine (Q) amino acid (aa) by histidine (H) aa. Three different SSCP patterns were observed: AA, AC, and CC, with frequencies of 0.540, 0.325, and 0.135, respectively. Association analyses revealed that the AA individuals had a higher average daily gain (ADG) than other individuals (CC and AC) from birth to 9 months of age. We conclude that the AA genotype in C287A SNP in the exon 10 of the IGF2 gene is associated with the ADG during the age from birth to 9 months and could be used as a potential genetic marker for selection of growth traits in Egyptian buffalo.     

Molecular identification of chlamydial cause of abortion in small ruminants in Jordan

Chlamydophila abortus (Ch. abortus) is the etiological agent of ovine enzootic abortion (OEA) and one of the most common infectious agents of abortion in small ruminants worldwide. RFLP-PCR analysis of the outer membrane protein gene (OMP2 gene) was used for diagnosis and characterization of chlamydial causes of abortion in small ruminants in Jordan. Sixty-six placental tissues and 15 vaginal swabs were collected from aborted ewes and does to identify cause of abortion in Jordan. Thirty-eight placental samples (58 %) and 13 vaginal swabs (87 %) were positive for chlamydial DNA. Shedding of bacteria in vaginal swabs was detected within 7 days after abortion. The results of this study showed that chlamydiosis is one of the important causes of abortion in small ruminants in Jordan. In addition, vaginal swab is an excellent sample for molecular diagnosis of chlamydiosis. DNA sequencing and RFLP analysis of the OMP2 reveal that all chlamydial cause of abortion in small ruminants in Jordan are due to Ch. abortus. While, Ch. pecorum was not detected in any sample. OMP2 gene of the isolated Jordanian strain was identical (100 %) to Ch. abortus FAS strain. In conclusion, Ch. abortus is an important cause of abortion in Jordan; vaginal swab within 7 days of abortion can be used for molecular diagnosis of chlamydiosis in small ruminants.     

Development of a new method, based on a bioreactor coupled with an L-lactate biosensor, toward the determination of a nonspecific inhibition of L-lactic acid production during milk fermentation

The development and characteristics of a bioreactor employing bacteria (Streptococcus thermophilus) encapsulated in Ca-alginate beads coupled with an L-lactate biosensor are reported. The biosensor comprises a carbon paste electrode modified with enzymes HRP (horseradish peroxidase), LOD (lactate oxidase), and FcH (ferrocene) as redox mediator. The measurement of L-lactate is based on the signal produced by H(2)O(2), the product of the enzymatic oxidation of L-lactate by LOD. The detection of H(2)O(2) is performed at the electrode surface via HRP/FcH at low operating potential (-100mV vs Ag/AgCl). Optimization studies were performed using the bioreactor in conjunction with an L-lactate electrode operating in a flow injection system to assess the ability of encapsulated bacteria to ferment carbohydrate solutions. The possibility of using the developed method to assess the fermentation capability of milk samples was evaluated. Bronopol (2-bromo-2-nitro propane-1,3-diol) was chosen to simulate the effect of an inhibitory agent of milk fermentation. The obtained results indicated that the evaluation of the amount of L-lactate amount produced through the bioreactor could be used as a measure of inhibition of lactic acid production in milk samples.     

Status and ethno-medicinal usage of invasive plants in traditional health care practices: a case study from northeastern Bangladesh

Species diversity and ethno-medicinal usage of 39 species of invasive plants were explored in and around two protected areas, Khadimnagar National Park (KNP) and Rema-Kalenga Wildlife Sanctu- ary (RKWS), of northeastern Bangladesh,. Status of invasive plants were investigated in 60 sample plots with 5 different habitat types, including forest, roadside, homestead, fallow land and others (ponds, canals, water logged areas, agricultural land, etc.). Data about the usage of invasive plants in traditional health care were collected through interviewing 110 households. Among the five habitat types, fallow land (28 species) pos- sessed the highest number of species, followed by roadside (25 species), forest (23 species), homestead (22 species) and others (13 species). Based on the survey, invasive plants of study areas were also categorized into five degrees of invasiveness e.g., naturalized, introduced, possibly invasive, moderately invasive and highly invasive. Additionally, there is the linear trend between degrees of invasiveness and use percentage of invasive plants. Total 39 species of invasive plants belonging to 29 fami- lies were recorded, which are generally used to treat 37 diseases, ranging from simple headache to highly complicated eye and heart diseases. The majority of the species used by the local inhabitants were herbs (16 spe- cies), followed by some shrubs (11 species), climbers (5 species), trees (5 species) and grasses (2 species). The use percentage of aboveground plant parts were higher (70.58%) than that of underground plant parts (16.18%).     

Relationships between frost hardiness,root growth potential,and photosynthesis of nursery-grown white spruce seedlings

• Context  

Root growth is a characteristic to which nursery personnel is particularly attentive. The increase in root growth of white spruce seedlings in the autumn relies on the current season’s photosynthates. Needle hardening or a decrease in the mass of photosynthetically active foliage as a result of early frost may negatively affect the seedling’s photosynthetic capacity and its ability to fuel root growth.     

Homestead forest resources and their role in household economy: A case study in the villages of Gazipur Sadar Upazila of central Bangladesh

This study examines the species composition, diversity and economic importance of homestead forests in the household economy of central Bangladesh. The study documents 57 homestead forest species and their main usage in 90 households across three villages of Gazipur Sadar Upazila. Homestead forests in Bangladesh comprise a mixture of fruit, timber and bamboo species. While superficially homestead forestry appears unimportant in rural livelihoods, in reality the contribution is huge, both as a source of food security and for other necessary household materials. A clear understanding of the physical characteristics and economic role of homestead forests in rural livelihoods is vital for ensuring sustainable resource management. Income and production of homestead forestry on a per hectare basis are found to vary widely between landholding size classes. Significant relationships are identified between forest performance (production and income) and species richness and education level. Homestead forestry appears to be a potential subsistence income generating land-use practice in the study area. The economic scope of homestead forestry can be further enhanced provided the appropriate species composition of the forest is achieved and the education of forest owners is ensured through targeted management and policy interventions.     

Compounds Identified from Marine Mangrove Plant (Avicennia alba) as Potential Antiviral Drug Candidates against WDSV,an In-Silico Approach

Walleye dermal sarcoma virus (WDSV) is a type of retrovirus, which affects most of the adult walleye fishes during the spawning time. The virus causes multiple epithelial tumors on the fish’s skin and fins that are liable for more than 50% of the mortality rate of fish around the world. Till now, no effective antiviral drug or vaccine candidates have been developed that can block the progression of the disease caused by the pathogen. It was found that the 582-amino-acid (aa) residues long internal structural gag polyprotein of the virus plays an important role in virus budding and virion maturation outside of the cell. Inhibition of the protein can block the budding and virion maturation process and can be developed as an antiviral drug candidate against the virus. Therefore, the study aimed to identify potential natural antiviral drug candidates from the tropical mangrove marine plant Avicennia alba, which will be able to block the budding and virion maturation process by inhibiting the activity of the gag protein of the virus. Initially, a homology modeling approach was applied to identify the 3D structure, followed by refinement and validation of the protein. The refined protein structures were then utilized for molecular docking simulation. Eleven phytochemical compounds have been isolated from the marine plant and docked against the virus gag polyprotein. Three compounds, namely Friedlein (CID244297), Phytosterols (CID12303662), and 1-Triacontanol ({"type":"entrez-protein","attrs":{"text":"CID68972","term_id":"813536909"}}CID68972) have been selected based on their docking score −8.5 kcal/mol, −8.0 kcal/mol and −7.9 kcal/mol, respectively, and were evaluated through ADME (Absorption, Distribution, Metabolism and Excretion), and toxicity properties. Finally, molecular dynamics (MD) simulation was applied to confirm the binding stability of the protein-ligands complex structure. The ADME and toxicity analysis reveal the efficacy and non-toxic properties of the compounds, where MD simulation confirmed the binding stability of the selected three compounds with the targeted protein. This computational study revealed the virtuous value of the selected three compounds against the targeted gag polyprotein and will be effective and promising antiviral candidates against the pathogen in a significant and worthwhile manner. Although in vitro and in vivo study is required for further evaluation of the compounds against the targeted protein.     

Improved efficiency of detection of potato mop-top furovirus in potato tubers and in the roots and leaves of soil-bait plants

Summary A reverse trancription-polymerase chain reaction (RT-PCR) assay was devised and shown to be sensitive and reliable for the detection of potato mop-top virus (PMTV) RNA sequences in the flesh of virus infected potato tubers, and in the roots and leaves of soil-bait plants. This assay was compared with an enzyme-linked immunosorbent assay incorporating PMTV specific monoclonal antibodies (TAS-ELISA). The tests were devised to improve the efficiency of detection of viruliferousSpongospora subterranea in agricultural soils, and PMTV in potato tubers. RT-PCR detected PMTV RNA sequences in the roots and leaves of bait plants after three weeks growth in viruliferous soil, three weeks before the bait plants themselves developed symptoms, and two weeks before the virus was detected by TAS-ELISA. Both RT-PCR and TAS-ELISA detected PMTV in the tubers of primary-infected potatoes. RT-PCR and TAS-ELISA were shown to be more sensitive and reliable than conventional baittests and sap inoculation methods for the detection and diagnosis of PMTV.     

Fish assemblages of Red Sea backreef biotopes

• 1. Fish assemblages of shallow‐lagoonal biotopes (seagrass beds, coral patches, reef flat and sand) were examined within the Nabq Managed Resource Protected Area (MRPA), South Sinai, Egypt. This protected area supports a small‐scale artisanal Bedouin fishery, managed by gear restrictions and a network of no‐take zones (NTZs).
• 2. Coral patches showed highest species richness and diversity of fish, followed in order by the reef flat, shallow seagrass beds and sandy bottoms.
• 3. There were clear differences in fish assemblages between the biotopes surveyed, little differences between sampling areas and no significant differences in fish assemblages between no‐take and take zones, suggesting species characteristic of these shallow‐water biotopes are dispersed along the coast irrespective of fishing pressure.
• 4. Nine species (Acanthurus nigrofuscus, Asterropteryx semipunctatus, Cryptocentrus caeruleopunctatus, Cheilio inermis, Thalassoma rueppellii, Lethrinus mahsena, Lethrinus nebulosus, Parupeneus forsskali and Pomacentrus trilineatus) had a 95% correlation to the pattern of assemblage distribution, indicating these species are the most important determinants of the fish community.
• 5. Approximately one‐third of fishes recorded appeared to be juveniles, with seagrass beds having a particularly high proportion of juvenile fish, including several commercial species.
• 6. The structure of the fish assemblage and fish size suggests that shallow‐water biotopes in Nabq MRPA may be acting as nursery areas of commercial fish for the Bedouin fishery.

Copyright © 2006 John Wiley & Sons, Ltd.