A set of near-isogenic lines for blast resistance genes with an Indica-type rainfed lowland elite rice (Oryza sativa L.) genetic background

A set of near-isogenic lines for blast resistance genes was developed by using an Indica-type elite rice variety, IR49830-7-1-2-2, suitable for the rainfed lowland conditions in the tropics, as a genetic background. Initially, we revealed that IR49830-7-1-2-2 harbors five blast resistance genes - Pia, Pib, Pik-s, Pita, and Pi11(t) - by using a differential system involving 19 selected standard blast isolates from the Philippines. Based on this result, we developed nine near-isogenic lines (NILs) targeting eight resistance genes - Pik, Pi7(t), Pi3, Pi5, Pita-2, Piz-5, Pish, and Pi9 - by recurrent backcrossing. The introgression of each resistance gene in the NILs was confirmed by reaction patterns to the blast isolates, allelism tests, and DNA marker analysis. In addition, a genome-wide DNA marker survey revealed that most of the chromosome regions in each NIL were of the IR49830-7-1-2-2 type. The agricultural characteristics of most of the developed NILs were almost the same as those of IR49830-7-1-2-2. Moreover, with one exception, they showed submergence tolerance similar to IR49830-7-1-2-2. The developed NILs could be used as a multiline variety suitable for the rainfed lowland in the tropics.     

In vitro development of bovine nuclear transfer embryos reconstructed with mammary gland epithelial cells at different passages

In the present study, the effect of passage of nuclear donor cells on the in vitro development of nuclear transfer (NT) embryos was investigated using colostrum‐derived mammary gland epithelial (MGE) cells at different passages (3–30 passages) to find reliable passages for the efficiency of cloning. Development of NT embryos to the blastocyst stage was affected by the number of passages of MGE cells (P < 0.05). Nuclear transfer embryos reconstructed with MGE cells at 3–7 passages showed a significantly higher blastocyst development (31.3–48.5%) than those with the cells at 10–30 passages (2.5–12.5%, P < 0.05). No difference in the proportion of the MGE cells with normal diploid was observed among passage of 3, 15 and 30 (P > 0.05). The use of MGE cells at early passages for nuclear donor cells may be advantageous for the production of NT embryos.     

Application of GCOM-C SGLI for agricultural water management via field evapotranspiration

Paddy and Water Environment - Evapotranspiration is a key parameter in agricultural water planning and management strategies because it determines the crop and irrigation water requirements. With...     

The Effects of Frequent Electroejaculation on the Semen Characteristics of a Captive Siberian Tiger (Panthera tigris altaica)

Artificial insemination (AI) can help to avoid inbreeding and genetic degeneration for sustaining genetically healthy populations of endangered species in captivity. Collection of a sufficient quantity of viable sperm is an essential first step in the AI process. In the present study, we examined the effects of frequent electroejaculation on semen characteristics in a Siberian tiger. We collected semen in all 17 trials during 6 breeding seasons (6 years). The mean number of sperm and the percentage of motile sperm were 294.3 ± 250.2×10⁶/ejaculate and 82.4 ± 11.4%, respectively. The number of motile sperm tended to increase during frequent electroejaculation in the same breeding season. Semen collection by electroejaculation can be performed effectively up to the fourth sequential ejaculate, which contained the most sperm in the study. In conclusion, frequent collection of sperm by electroejaculation from tigers may be effective for collection of a large number of motile sperm.     

Therapeutic use of plants by local communities in and around Rema-Kalenga Wildlife Sanctuary: implications for protected area management in Bangladesh

Traditional systems of medicine have become a topic of global importance recently. Increased commercialization of economically important medicinal plants has resulted in overharvesting, threatening their survival. The present study was carried out to document the indigenous uses of medicinal plants by the local communities in and around Rema-Kalenga Wildlife Sanctuary, Bangladesh. Data collection was predominantly qualitative recording the species use, identifying their relative importance (RI) and assessing the informants’ consensus factor (F_ic) on associated knowledge. We interviewed 140 households of the local community and 5 local herbal practitioners. A total of 44 plant species were in use to treat 33 ailments under 10 broad disease categories. Five species were found to have high use versatility (RI > 1), Emblica officinale L. being the most versatile. Respiratory problems scored the highest F_ic value (0.56) involving the use of 30% of the species recorded. Terminalia bellerica Roxb., Sterculia villosa Roxb., Dillenia pentagyna Roxb. and Terminalia arjuna Bedd. were being harvested commercially. Use by the community, particularly for subsistence consumption, seemed to be sustainable, but commercial extraction of some species appeared unsustainable. Buffer zone-based commercial farming of medicinal plants with a commercial value could serve a dual purpose of assuring sustainable alternative income generation for local communities as well as conserving the natural resources in protected areas.     

Identification of a bacterium isolated from galls on carrot and weeds

In 2004, bacterial galls were found on the roots of carrots in Shizuoka Prefecture, Japan. Galls were about 0.1–2 cm in diameter, light brown in color and had rough surfaces. In 2005, similar galls were found on the roots of three weeds: henbit (Lamium amplexicaule L.), Persian speedwell (Veronica persica Poir.) and leaf mustard (Brassica juncea L.). A bacterium that forms white, rough colonies was isolated from the carrot and weeds galls. The bacterial isolates had properties identical with Rhizobacter dauci Goto and Kuwata. Phylogenetic analysis based on 16S rDNA sequences showed that the carrot isolate had the highest homology (similarity of 100%) with that of the type strain of R. dauci. Rep-PCR genomic fingerprinting using BOX A1R primer showed that the carrot and weeds isolates were nearly identical. Pathogenicity of the isolates was confirmed by inoculating the roots of carrots and the weeds. After 2–5 weeks, they formed galls on the roots of the original host species and on other plant species tested. The galls were indistinguishable from those formed naturally, and the inoculated bacterium was reisolated. Thus, the causal bacterium of carrot and weeds gall was identified as R. dauci, and the bacterium was found to have a wider host range than previously known. These weed hosts may serve as inoculum sources for carrot bacterial gall disease.     

An Improved Method for Isolating Violet Root Rot Fungus, Helicobasidium mompa, from Basidiocarps

Basidiocarps of the violet root rot fungus, Helicobasidium mompa, are less frequently used for isolation than are mycelial strands and sclerotia even though the basidiocarps are conspicuously produced at the trunk base of diseased plants. Basidiocarps are also more suitable for storage. This paper describes an improved method for obtaining pure cultures from basidiocarps using microcentrifuge tubes to facilitate the awkward steps of rinsing fungal materials under a dissecting microscope. Received 28 June 2000/ Accepted in revised form 4 August 2000     

Molecular markers for genotyping anastomosis groups and understanding the population biology of Rhizoctonia species

Soil-borne Rhizoctonia fungi cause serious diseases in several plant species. For the classification of these fungi, the number of nuclei in a hyphal cell and the anastomosis reaction are important criteria. Although Rhizoctonia spp. has a wide host range, the causal agents have been reported to be selective for host plant families or species and lead to severe disease. Reports of new diseases, particularly in new host plants, and severe damage in agricultural fields incurred by subdivided or newly found groups of Ceratobasidium and Waitea circinata (a varied teleomorph of Rhizoctonia) have been increasing in recent years. The food production environment is altering because of climate change, introduction of potential new host plants, and heavy use of chemicals that reduce microbial diversity. These changes favor the occurrence of new diseases incurred by undefined anastomosis groups (AGs) or subgroups of Rhizoctonia spp. On the basis of the phylogenetic relationships of AGs and subgroups in Rhizoctonia spp., molecular markers for discriminating the groups of the Rhizoctonia species complex have been developed. The application of genetic markers, in the form of microsatellites or simple sequence repeats (SSR), has become increasingly important in fungal genetics. The analyses of population genetics for Rhizoctonia spp. using SSR markers elucidated the modes of sexual and asexual reproduction, phylogeographical distributions, and global migrations associated with adaptation to agroecosystems.     

Isolation and measurement of carbonic anhydrase isoenzyme III in plasma, sera, and tissues of dogs

OBJECTIVE: To purify canine carbonic anhydrase isoenzyme III (CA-III) and determine plasma, serum, and tissue concentrations of CA-III in healthy dogs and dogs with experimentally induced muscle damage. ANIMALS: 121 healthy Beagles. PROCEDURE: Muscle was obtained from 2 Beagles after euthanasia, and CA-III was purified and characterized by use of column chromatography and electrophoresis, respectively. A CA-III-specific ELISA was developed to determine concentrations of CA-III in plasma of 116 dogs and tissues of 1 dog. Serum creatine kinase (CK) activity and CA-III concentration were also determined before and after induction of muscle damage by IM injection of 2 ml of 10% lidocaine to 2 dogs. RESULTS: Canine CA-III had a molecular weight of 28 kd and an isoelectric point of 8.2. Mean (+/- SD) concentration of CA-III in plasma of healthy dogs was 16.91 +/- 9.55 ng/ml. The highest tissue concentration of CA-III was detected in skeletal muscle. Serum concentration of CA-III increased and peaked within the first 2 to 3 hours after induction of muscle damage. The increase in CA-III concentration was more rapid than that of CK activity, and concentration reached its maximum and returned to baseline sooner than did CK activity. CONCLUSIONS AND CLINICAL RELEVANCE: The CA-III ELISA we developed was a sensitive method for determining CA-III concentrations in plasma, serum samples, and tissue specimens of dogs. Use of this ELISA requires only a small volume of serum and may enable the study of changes in CA isoenzyme concentrations associated with muscle disorders in dogs.