Specific respiration rates, adenylates, and energy budgets of soil microorganisms after addition of transgenic Bt-maize straw

An arable soil was incubated with straw (stem+leaves) of two transgenic Bt-maize varieties (Novelis: event MON810 and Valmont: event Bt176) and the two corresponding near-isogenic varieties (Nobilis and Prelude). The aim was to evaluate the use of these substrates for microbial growth and maintenance in soil during early decomposition. The addition of Bt-maize straw increased CO₂ production rates and the specific respiration rates CO₂-C/microbial biomass C and CO₂-C/ATP significantly compared with the addition of non-Bt maize straw. This extra energy in the Bt-maize straw could not be used for microbial biomass or ATP and ADP production, and was lost for maintenance. In addition, increased death rates of microbial biomass occurred in the soils treated with the Bt-maize straw from day 3 to 21. Generally, most of the energy was stored in microbial biomass, whereas only 10% of energy was stored in ATP, and only 1-2% in ADP. The AEC (adenylate energy charge: (ATP+0.5×ADP)/(AMP+ADP+ATP)) was not affected by any treatment. The reasons for the lower efficiency of microbial substrate use after adding Bt-maize straw cannot be fully explained by the present experiment. However, a risk assessment has to look at the impact of transgenic plant material on soil microorganisms at different maturity stages.     

Tumor necrosis factor signaling requires iRhom2 to promote trafficking and activation of TACE

The cytokine tumor necrosis factor (TNF) is the primary trigger of inflammation. Like many extracellular signaling proteins, TNF is synthesized as a transmembrane protein; the active signal is its ectodomain, which is shed from cells after cleavage by an ADAM family metalloprotease, ADAM17 (TNFα-converting enzyme, TACE). We report that iRhom2 (RHBDF2), a proteolytically inactive member of the rhomboid family, is required for TNF release in mice. iRhom2 binds TACE and promotes its exit from the endoplasmic reticulum. The failure of TACE to exit the endoplasmic reticulum in the absence of iRhom2 prevents the furin-mediated maturation and trafficking of TACE to the cell surface, the site of TNF cleavage. Given the role of TNF in autoimmune and inflammatory diseases, iRhom2 may represent an attractive therapeutic target.     

The conflict over Veracel pulpwood plantations in Brazil — Application of Ethical Analysis

The large-scale pulp investment model, with its pressure on land, has created conflict and caused major disagreements and open hostility amongst the social movement and NGO networks, state actors, and the pulp and paper companies in Brazil. In this article, Ethical Analysis was applied in the assessment of the dynamics and possibilities of conflict resolution related to the expansion of pulpwood plantations in Brazil's Bahia State, particularly near Veracel Celulose. Ethical Analysis as a tool identifies the complex dynamics of contention through identifying bridges and rifts in the social, ecological and economic viewpoints of the main actors. The analysis was based on field research, interviews, and a review of existing literature. The results indicated that the conflict is marked by politics of power, and as long as this stage continues, the politics of cooperation and conflict resolution would be hard to achieve. The key actors have diverging interests, values and principles, and different ways of presenting their viewpoints. The current investment context is economically and institutionally peripheral and socially weak. Without a radical rethinking and emphasis on ethical and structural reworking of the investment model, the conflict will likely continue to deepen, aggravating investment risk for large-scale business and industrial forestry.     

Epizootic hemorrhagic disease virus infection of type I interferon receptor deficient mice

Type I interferon receptor deficient (IFNAR(-/-)) mice were infected with an Israeli isolate of serotype 7 of epizootic hemorrhagic disease virus (EHDV; Orbivirus, Reoviridae). Two out of two mice that received 5×10(5) 50% tissue culture infectious doses (TCID(50)) by intraperitoneal injection died or were euthanized in a moribund state on day 5 after infection. One mouse out of three that had been inoculated with 5×10(2) TCID(50) died on day 7 while the remaining mice did not show any clinical signs and survived until the end of the experiment. Spleens of all dead mice were highly positive in an EHDV real-time RT-PCR (quantification cycle values ≤15) and contained ≥10(5.8) TCID(50) of virus per ml of homogenate. The viral RNA content and virus titer in the spleens of the two surviving mice, on the other hand, were over 100-fold lower. Different from data reported for BTV, the outcome of EHDV infection of IFNAR(-/-) mice is dose-dependent and subclinical infections can occur.     

Assessing parent material uniformity of a red and black soil complex in the landscapes

The distribution of red and black soil (Xeralfs–Xerolls) associations in the Monarto area (South Australia) is complex and their genesis either being derived from a uniform parent material or a lithologic discontinuity is not known. The objectives of this study were (i) to assess Zr- and Ti-bearing grains as minerals resistant to chemical weathering prior to employing Zr and Ti in determining parent material uniformity, and (ii) to confirm whether pedological processes or a lithologic discontinuity may be responsible for the textural contrast within the red and black soil profiles. Scanning electron microscopy (SEM) and energy dispersive X-ray analysis (EDAX) were used to study chemical weathering and elemental composition of surfaces of Zr- and Ti-bearing grains. X-ray fluorescence (XRF) analysis was used to determine elemental concentrations in various soil fractions. Results showed that Zr-bearing grains consisted of only zircon having smooth clean surfaces, which are characteristic of a mineral resistant to chemical weathering. EDAX spectra confirmed that Zr was a specific element to represent zircon, suggesting its reliability to be used in assessing parent material uniformity. On the other hand, Ti derived not only from minerals (rutile/anatase) resistant but also from minerals (ilmenite/pseudorutile, biotite) susceptible to chemical weathering. This limited the usefulness of Ti as an index mineral for soil development studies. Except for Zr:Ti ratio, all other indicators of parent material uniformity, i.e., depth distribution curves of Zr and Y in various fractions and Y:Zr ratio showed no considerable inflection and variation with depth in a Xeralf (red soil). This indicated the Xeralf derived from a uniform parent material (mica schists), thereby texture contrast within a profile is due to pedological processes. On the other hand, depth distribution curves showed clear inflection and variation in Xerolls (black soils), indicating soils developed from lithologic discontinuities, so different trends in particle size fractions between 0–48 cm for MA5 and 0–59 cm for MA3 profiles compared to the underlying layers are due to parent material differences and not pedogenesis. The presence of complex red and black soil association in the landscape is attributed to the difference in parent materials, where the red soil developed from mica schist and the black soils from calcareous deposits.     

CO2 evolution and N mineralization after biogas slurry application in the field and its yield effects on spring barley

The objective of this study was to investigate the effects of biogas slurry derived from straw-rich farmyard manure on the soil microbial biomass, on the mineralization in the field and on the related crop yield. The experiment was carried out in the following four treatments: (1) fallow, (2) fallow + biogas slurry, (3) spring barley, and (4) spring barley + biogas slurry. The CO₂ evolution rate ranged between 15 and 120 mg C m⁻² h⁻¹ in both fallow treatments and showed a significant exponential relationship with the soil temperature at 5 cm depth. According to the extrapolation of the CO₂ evolution rates into amounts per hectare, approximately 200 kg C ha⁻¹ or 27% of the biogas slurry derived C were mineralized to CO₂ during a 50 days’ period to 18 June in the fallow treatment with biogas slurry. An additional amount of up to 29.5 kg inorganic N ha⁻¹ could be calculated as the sum of NH₄-N already present in biogas slurry at the time of amendment and from the amount of biogas slurry mineralized in the soil to NO₃-N. A good agreement between measured and modelled stocks of inorganic N at 0–60 cm depth was obtained after having five-fold increased soil organic C turnover compared to the default values of the model DNDC. The mineralization data are in line with an amount of up to 21 kg ha⁻¹ more N transferred by the barley plants to their aboveground biomass in biogas slurry treatment. The N not accounted for by the aboveground plant biomass could be explained by the belowground plant-derived N. CO₂ evolution from the soil surface, inorganic N content at 0–60 cm depth and N transfer into barley aboveground biomass lead apparently to similar results after the application of biogas slurry. The soil ATP content after harvest of the barley was significantly larger in the two treatments with biogas slurry, especially in the fallow treatment indicating a positive effect on the soil microbial community.     

N-linked glycosylation of folded proteins by the bacterial oligosaccharyltransferase

N-linked protein glycosylation is found in all domains of life. In eukaryotes, it is the most abundant protein modification of secretory and membrane proteins, and the process is coupled to protein translocation and folding. We found that in bacteria, N-glycosylation can occur independently of the protein translocation machinery. In an in vitro assay, bacterial oligosaccharyltransferase glycosylated a folded endogenous substrate protein with high efficiency and folded bovine ribonuclease A with low efficiency. Unfolding the eukaryotic substrate greatly increased glycosylation. We propose that in the bacterial system, glycosylation sites are located in flexible parts of folded proteins, whereas the eukaryotic cotranslational glycosylation evolved to a mechanism presenting the substrate in a flexible form before folding.     

Application of two-dimensional gel electrophoresis to interrogate alterations in the proteome of gentically modified crops. 3. Assessing unintended effects

The current procedures to assess the safety of food and feed derived from modern biotechnology include the investigation of possible unintended effects. To improve the probability of detecting unintended effects, profiling techniques such as proteomics are currently tested as complementary analytical tools to the existing safety assessment. An optimized two-dimensional gel electrophoresis (2DE) method was used as a proteomics approach to investigate insertional and pleiotropic effects on the proteome due to genetic engineering. Twelve transgenic Arabidopsis thaliana lines were analyzed by 2DE, and their seed proteomes were compared to that of their parental line as well as to 12 Arabidopsis ecotype lines. The genetic modification of the Arabidopsis lines, using three different genes and three different promoters, did not cause unintended changes to the analyzed seed proteome. Differences in spot quantity between transgenic and nontransgenic lines fell in the range of values found in the 12 Arabidopsis ecotype lines or were related to the introduced gene.