Shading effect on physiological parameters and in vitro embryo production of tropical adapted Nellore heifers in integrated crop-livestock-forest systems

Tropical Animal Health and Production - The aim of this study was to evaluate the impact of increased shadow supply in integrated crop-livestock-forest systems on in vitro embryonic development and...     

Improving genomic prediction accuracy for meat tenderness in Nellore cattle using artificial neural networks

The goal of this study was to compare the predictive performance of artificial neural networks (ANNs) with Bayesian ridge regression, Bayesian Lasso, Bayes A, Bayes B and Bayes Cπ in estimating genomic breeding values for meat tenderness in Nellore cattle. The animals were genotyped with the Illumina Bovine HD Bead Chip (HD, 777K from 90 samples) and the GeneSeek Genomic Profiler (GGP Indicus HD, 77K from 485 samples). The quality control for the genotypes was applied on each Chip and comprised removal of SNPs located on non-autosomal chromosomes, with minor allele frequency <5%, deviation from HWE (p < 10^–6), and with linkage disequilibrium >0.8. The FImpute program was used for genotype imputation. Pedigree-based analyses indicated that meat tenderness is moderately heritable (0.35), indicating that it can be improved by direct selection. Prediction accuracies were very similar across the Bayesian regression models, ranging from 0.20 (Bayes A) to 0.22 (Bayes B) and 0.14 (Bayes Cπ) to 0.19 (Bayes A) for the additive and dominance effects, respectively. ANN achieved the highest accuracy (0.33) of genomic prediction of genetic merit. Even though deep neural networks are recognized to deliver more accurate predictions, in our study ANN with one single hidden layer, 105 neurons and rectified linear unit (ReLU) activation function was sufficient to increase the prediction of genetic merit for meat tenderness. These results indicate that an ANN with relatively simple architecture can provide superior genomic predictions for meat tenderness in Nellore cattle.     

Daily and seasonal variations in haematological and blood biochemical parameters in the tench, Tinca tinca Linnaeus, 1758

The purpose of the present study was to characterize daily variations in haematology and blood biochemistry in healthy male and female tench (Tinca tinca) in the four seasons of the year. Red blood cells, haematocrit and haemoglobin presented a similar daily profile in spring and summer, with high values during the scotophase. Total and differential types of leucocytes showed significant daily fluctuations, with a different pattern depending on the season and/or the type of leucocytes studied. A daily rhythm in plasma glucose and triglycerides was detected in winter, but significant changes in cholesterol concentrations were only detected in females during summer. The lowest mean level for triglycerides and cholesterol was observed in winter. The daily profile of plasma total proteins was similar in the four seasons, without a significant daily oscillation. All these daily and seasonal changes in haematology and blood biochemistry indicate that the time of the day and the season must be considered when such parameters are used for assessing the physiological status of the fish, and as biomarkers for disease and/or pollutant exposure.     

Genetic variation and genotype-environment interactions in short rotation <Emphasis Type="Italic">Populus</Emphasis> plantations in southern Europe

Growth and production in the first year, as additional selection criteria, were assessed for nine poplar clones to be used as short rotation woody crops (SRWC) in the production of biomass for energy purposes. In order to identify the most promising clones in terms of growth and yield and also to assess their stability, trials were established at different locations in Spain. The majority of these clones, which form part of the European list of base materials, have frequently been used in plantations aimed at timber production but not for biomass in Mediterranean conditions. Others, such as those selected in Italy specifically for biomass production (currently provisionally admitted), are being tested for the first time under different soil and climatic conditions in Southwest Europe. The early selection of clones for rapid juvenile growth provides a valuable additional input to the clonal selection process, especially where very short rotations are desired (no more than 3 years). In any case, determining clonal stability in terms of growth is of great use not only when deciding on the clones to be used in plantations but also when developing breeding programs. ANOVA and Genotype plus Genotype × Environment (GGE) biplot analyses were used to analyse the growth and stability of the clones, which were then ranked according to mean performance and stability. Differences were detected between clones as well as between the different environments tested. The biplot analysis allowed different groups of clones to be identified according to their performance and degree of interaction displayed, thus providing useful information for the selection process. The production of aboveground biomass in the first vegetative period ranged from 1.7 to 8.0 Mg DM ha⁻¹ at the different sites. ‘Monviso’, ‘Guardi’, ‘AF2’ and ‘2000 verde’ were the most productive clones whereas ‘Unal’, ‘Pegaso’ and ‘USA 49-177’ were the least productive. The stability analysis identified ‘AF2’, ‘Guardi’, ‘I-214’ and ‘MC’ as more stable clones while ‘Monviso’, ‘2000 verde’, ‘Unal’, ‘Pegaso’ and ‘USA 49-177’ were found to be specifically adapted to certain environments. This implies that where information on site conditions is not available, the ‘AF2’ and ‘Guardi’ clones offer greater assurance of successful establishment and higher initial growth. The growth of ‘Monviso’ ‘2000 verde’ ‘Unal’ ‘Pegaso’ and ‘USA 49-177’ clones is highly dependent on site conditions during the establishment phase. Similarly, the SH (Shore Henares river) and LT (La Tallada) sites were identified as the most highly discriminative environments for the set of clones while CS (Cubo de la Solana) and AR (Atarfe) were identified as those where performance levels were average.     

Genetic Characterization of Brazilian Annual <Emphasis Type="Italic">Arachis</Emphasis> Species from Sections <Emphasis Type="Italic">Arachis</Emphasis> and <Emphasis Type="Italic">Heteranthae</Emphasis> using RAPD Markers

The genus Arachis is divided into nine taxonomic sections. Section Arachis is composed of annual and perennial species, while section Heteranthae has only annual species. The objective of this study was to investigate the genetic relationships among 15 Brazilian annual accessions from Arachis and Heteranthae using RAPD markers. Twenty-seven primers were tested, of which nine produced unique fingerprintings for all the accessions studied. A total of 88 polymorphic fragments were scored and the number of fragments per primer varied from 6 to 17 with a mean of 9.8. Two specific markers were identified for species with 2n = 18 chromosomes. The phenogram derived from the RAPD data corroborated the morphological classification. The bootstrap analysis divided the genotypes into two significant clusters. The first cluster contained all the section Arachis species, and the accessions within it were grouped based upon the presence or absence of the ‘A’ pair and the number of chromosomes. The second cluster grouped all accessions belonging to section Heteranthae.     

Variability of hair coat and skin traits as related to adaptation in Criollo Limonero cattle

The variation in hair coat and skin histology traits of Criollo Limonero cattle was analyzed using 213 Criollo Limonero females. Skin biopsies were obtained from slick-haired (N = 16) and normal-haired (N = 14) animals. Measured traits included hair length (HL), color coat (CC), number of hair follicles per square centimeter (NHF), sweat glands per square centimeter (NSG), sweat glands size (SGS), sebaceous glands per square centimeter (NSBG), blood vessels per square centimeter (NBV), and thickness of epidermis (TE). Hair length differed (P < 0.001) between slick- and normal-haired animals (4.9 ± 0.12 vs 10.9 ± 0.20, respectively). Differences (P < 0.01) in CC (Bayo = 144/67.6% vs Red = 69/32.4%) and HL (slick-haired = 199/93.4% vs normal-haired = 14/6.5%) were found. Distribution of slick- and normal-haired animals differed (P < 0.01) between bayo-coated and red-coated (139/62.2% vs 9/4.2%; respectively). Most (P < 0.05) red-coated animals belonged to a single family. No differences (P > 0.05) were found between slick-haired and normal-haired animals in NHF (637 ± 164 vs 587 ± 144, respectively), NSG (556 ± 134 vs 481 ± 118, respectively), NSBG (408 ± 87 vs 366 ± 77, respectively), NBV (1628 ± 393 vs 1541 ± 346, respectively), and TE (1.24 ± 0.14 vs 1.32 ± 0.12, respectively). However, SGS was greater (P < 0.01) in slick-haired than normal-haired animals. In conclusion, Criollo Limonero cattle are predominantly bayo-coated, slick-haired, with a reduced number of hair follicles relative to Zebu cattle, sweat and sebaceous glands in proportion to hair follicle numbers, and with a high blood flow irrigating the skin. There is a sub-group of red-coated animals with yellow or cream skin, thicker epidermis, and with a higher frequency of normal-haired animals. It appears that the slick hair gene has been favored by natural selection in this breed.     

Hepatic profile of Gallus gallus Linnaeus, 1758 experimentally infected by Plasmodium juxtanucleare Versiani & Gomes, 1941

One of the species that causes avian malaria is Plasmodium juxtanucleare. It is commonly found in poultry, especially when the birds receive food free of coccidiostats. Since industrial and organic poultry breeding is increasing in the world and few studies have been conducted examining the clinical parameters of both healthy and infected birds, this work evaluated whether the infection caused by P. juxtanucleare in Gallus gallus provokes alterations in the birds' hepatic profile. We analyzed the activity of ALT and AST and carried out histological analyses of liver sections of infected fowls by intracelomic inoculation with infected blood from a donor fowl with a parasite load of around 7%. The infected birds' parasite load was evaluated during 45 days by means of blood smears. There was a positive correlation between the increase in parasite load and higher ALT activity in the infected fowls, but there was no significant variation of the AST activity between the control and infected groups, possibly because of the non-specificity of this enzyme as an indicator of hepatic lesion. The results show that infection caused by P. juxtanucleare in G. gallus provokes hepatic alterations, indicated by the increase in the ALT enzyme activity and by the inflammatory infiltrates found in the liver sections of the infected fowls.     

Morphology and growth characteristics of cultured Leptomonas ctenocephali from Ctenocephalides felis felis (Siphonaptera: Pulicidae) of dogs in Brazil

To confirm the taxonomic identification of a trypanosomatid found in the hindgut, rectum and Malpighian tubules of dog fleas captured in Belo Horizonte, Minas Gerais, Brazil, between April and November of 2005, 910 specimens of Ctenocephalides felis felis were removed from street dogs and dissected, and isolates from their digestive tracts were cultivated in NNN-alpha-MEM medium. Four different morphological forms were observed in culture: long, slender, twisted promastigotes with a long flagellum; short, stubby, non-twisted promastigotes; rounded amastigotes; and cyst-like bodies. Twisted and non-twisted promastigotes were frequently seen forming rosettes, and these two forms presented significant differences (P<0.01) in terms of their morphological characteristics. Unlike the promastigote forms observed throughout the culture period, rounded amastigotes were seen only in the lag phase, and the cyst-like bodies were only seen in the decline phase. The trypanosomatid DNA obtained from the culture was analyzed by the polymerase chain reaction (PCR) method and found to be negative for Leishmania infantum chagasi. Based on the growth pattern, morphological parameters and molecular analysis, the flagellates were confirmed to be Leptomonas ctenocephali. The significance of this infection for animals is also commented.     

Management practices to control gastrointestinal parasites in dairy and beef goats in Minas Gerais; Brazil

Parasitic infection is recognized worldwide as a limiting factor in the production of goats, and various control methods are used to reduce economic losses, often without considering the epidemiology of the parasites. This has led to the development of highly tolerant parasite populations and the presence of chemical residues in the beef and milk. The objective of this study was to determine the level of knowledge of goat farmers about parasitic diseases and to correlate this with the epidemiology of endoparasites and parasite control practices in goat farms in the state of Minas Gerais, Brazil. The analysis was based on a questionnaire applied by trained veterinarians. The sample was homogeneous throughout the state, covering 18.4% (157/853) of municipalities. Eighty-four dairy goat farms in 81 municipalities and 200 properties with beef goats in 76 municipalities were evaluated. The herd size per goat farm ranged from 4 to 57 (average 24) for beef herds and from 2 to 308 (average 63) for dairy farms. The majority of the beef herd production was extensive and semi-extensive (98.5%), while the dairy herds were maintained under intensive farming (98.8%). The mixed production of goats and sheep was reported by 36.5% of beef goat farmers and by 20.2% of dairy goat farmers. Among the beef goats farms on which the technological level was determined, 2.0% were categorized as having high technological level, 34.5% as medium, and 63.5% as low. Of the 84 dairy farms, 30% operated at a high, 47% at a medium, and 23% at a low technological level. The adoption of practices to reduce parasitism, such as the quarantine of animals, treatment of newly arrived animals, regular cleaning of the floor, and technical assistance, was significantly higher on dairy farms than on beef farms. Although 85.7% of dairy farmers and 83% of beef farmers medicate their animals, the treatments were performed without technical criteria, and deworming intervals ranged from 30 to 120 days or more. The average interval between treatments was significantly longer in dairy goat herds (4.8 months) than in the beef herds (3.6 months). The most commonly used drugs were macrocyclic lactones (37.7% in dairy and 39.5% in beef herds) and benzimidazoles (48.9% in dairy and 31.5% in beef herds). Goat production in Minas Gerais is still in its infancy, and even though using a control program associated with other health practices, producers still rely heavily on chemicals to get satisfactory results.