Nutritional Environment of Tropical Peat Soils in Sarawak,Malaysia Based on Soil Solution Composition

It has been considered that natural peat soils and swamp forest ecosystems in the tropics are quite oligotrophic. This concept seems to be related to the low mineral contents in the soil solid phase of the peat soils. However, some nutritional elements such as K, Mg, Ca, and/or P may be abundant in the soil solution phase and could easily migrate in peat soils. In order to analyze the nutritional environment of peat soils, chemical composition of the soil solid phase and soil solution was compared.

This study was carried out in Naman Forest Reserve, Sibu and in/around Sg. Talau Peat Research Station, Mukah, Sarawak, Malaysia. In both areas, each of the three study sites with a different depth of underlying mineral layer was selected for sampling of soil and soil solution. All the soils studied except for one shallow peat profile were classified into Oligotrophic peat based on Fleischer’s criteria. The soil solution collected monthly showed the following characteristics in its composition.

1. Concentrations of Al, Si, and Fe were higher in the soil solution from the shallow peat than in that from the deep peat, reflecting the effect of underlying mineral layers on the soil solution composition.

2. Concentrations of Na, Mg, and Cl in the soil solution and Na and Mg contents in the soil solid phase reflected the distance from the sea. In the Naman series, accumulation of K and Ca in the soil solution was larger in the surface layer in the deep peat than in the shallow peat, though such clear trend was not observed for the K content in the soil solid phase.

3. The concentrations of N and P were fairly high in the soil solution in all the profiles except for P in the profile near the center of the peat dome. Dissolved P consisted mostly of ortho-phosphate, whereas a larger part of N was in the organic form.

4. At the Sago plantation farm on deep peat, depletion of K and P was observed during the rainy season. Such instability in the concentrations in the soil solution was attributed to forest clear-cutting and subsequent disturbance of nutrient cycling.

In general, the concentrations of N, P, K, and Ca in the soil solution were not low even in the Oligotrophic peat. However, in taking account of the fact that the peat soils showed low mineral contents in the available forms and that the bulk density was also quite low, the potential capacity to supply K, Ca, and/ or P was not necessarily high in spite of the apparent high intensity observed for the soil solution composition. Therefore, from the viewpoint of nutrient dynamics, the potential for the use of reclaimed peat land was considered to be rather limited especially under low input management.     

Antifreeze Peptides and Glycopeptides,and Their Derivatives: Potential Uses in Biotechnology

Antifreeze proteins (AFPs) and glycoproteins (AFGPs), collectively called AF(G)Ps, constitute a diverse class of proteins found in various Arctic and Antarctic fish, as well as in amphibians, plants, and insects. These compounds possess the ability to inhibit the formation of ice and are therefore essential to the survival of many marine teleost fishes that routinely encounter sub-zero temperatures. Owing to this property, AF(G)Ps have potential applications in many areas such as storage of cells or tissues at low temperature, ice slurries for refrigeration systems, and food storage. In contrast to AFGPs, which are composed of repeated tripeptide units (Ala-Ala-Thr)_n with minor sequence variations, AFPs possess very different primary, secondary, and tertiary structures. The isolation and purification of AFGPs is laborious, costly, and often results in mixtures, making characterization difficult. Recent structural investigations into the mechanism by which linear and cyclic AFGPs inhibit ice crystallization have led to significant progress toward the synthesis and assessment of several synthetic mimics of AFGPs. This review article will summarize synthetic AFGP mimics as well as current challenges in designing compounds capable of mimicking AFGPs. It will also cover our recent efforts in exploring whether peptoid mimics can serve as structural and functional mimics of native AFGPs.     

Immunization of proteins from Toxascaris leonina adult worm inhibits allergic specific Th2 response

Recently, the influence of parasitic infections on the incidence of allergic diseases has become the focus of increased attention. In order to ascertain whether parasite-derived proteins could inhibit the allergic specific Th2 response, we applied excretory-secretory protein (Tl-ES) or total protein (Tl-TP) of the adult worm Toxascaris leonina to asthma model mice prior to or simultaneously with OVA challenge, after which we assessed the OVA-specific Th2 responses. The group subjected to immunization with Tl-ES and Tl-TP (immunized group) evidenced a thinning of the bronchial epithelial and muscle layer, a disruption and shedding of epithelial cells, a reduction in the number of goblet cells, and a reduction in mucus production as compared to the group treated with Tl-ES coupled with OVA challenge (challenge with OVA groups) and the OVA-induced asthma group. The administration of Tl-ES and Tl-TP, regardless of injection time, was shown to inhibit the recruitment of inflammatory cells into the airway, and in particular, macrophages, neutrophils, and lymphocytes were significantly reduced as the result of the parasite proteins. However, the total number of eosinophils was slightly reduced as the result of the administration of parasite proteins. Sensitization and OVA challenge was shown to accelerate the secretion of Th2 cytokines (IL-4 and IL-5) within the lung, but in the immunized groups, those levels were lower. The administration of Tl-TP and OVA challenge group also evidenced a significant reduction in IL-4 levels as compared to the OVA-challenged group. The concentrations of Th2 cytokines in the Tl-ES and OVA challenge group were more similar to those observed in the OVA-challenged group. The concentration of IL-10 and TGF-beta in the lung was decreased substantially in the OVA-only challenge group, but the Tl-TP immunized group exhibited significantly induced IL-10 cytokine. OVA-specific IgG2a, IgG1, and IgE levels in the immunized groups were significantly lower than those detected in the OVA-challenged group. In conclusion, parasite-derived protein is able to inhibit OVA-specific Th2 responses, and in particular, immunization with parasite proteins exerts a more profound protective effect than is seen with the treatment of allergic reactions. The results of our study are encouraging in terms of our further understanding of the molecular basis of immune evasion by nematodes.     

Evaluation of standardized ileal digestible lysine requirement for 8–20 kg pigs fed low crude protein diets

Two experiments were conducted to determine the standardized ileal digestible lysine (SID Lys) requirement for weaned pigs fed with low crude protein (CP) diet. In Experiment 1, 144 pigs were fed a normal CP (20%) diet with 12.3 g/kg SID Lys and five low CP (18.5%) diets providing SID Lys levels of 9.8, 11.1, 12.3, 13.5, and 14.8 g/kg, respectively, for 28 days. Reducing dietary CP from 20% to 18.5% enhanced (p < 0.05) the growth performance. The average daily gain (ADG) and gain to feed ratio (G:F) increased (linear and quadratic; p < 0.05), serum urea nitrogen (SUN) decreased (linear and quadratic; p < 0.05) as SID Lys increased. The SID Lys levels required to maximize ADG and optimize G:F were 12.8 and 13.1 g/kg using a curvilinear plateau model, and to minimize SUN was 13.4 g/kg using a two‐slope broken‐line model, which averaged 13.1 g/kg SID Lys. In Experiment 2, 18 pigs were used in a 12‐day N balance trial and received the same diets of Experiment 1. Total N excretion was decreased when dietary CP reduced and further decreased when SID Lys increased. Collectively, 1.5% dietary CP reduction improved the growth performance and decreased the N excretion; the optimal SID Lys requirement was at 13.1 g/kg of 8–20 kg pigs fed with 18.5% CP diet.     

Whole genome detection of signature of positive selection in African cattle reveals selection for thermotolerance

As African indigenous cattle evolved in a hot tropical climate, they have developed an inherent thermotolerance; survival mechanisms include a light‐colored and shiny coat, increased sweating, and cellular and molecular mechanisms to cope with high environmental temperature. Here, we report the positive selection signature of genes in African cattle breeds which contribute for their heat tolerance mechanisms. We compared the genomes of five indigenous African cattle breeds with the genomes of four commercial cattle breeds using cross‐population composite likelihood ratio (XP‐CLR) and cross‐population extended haplotype homozygosity (XP‐EHH) statistical methods. We identified 296 (XP‐EHH) and 327 (XP‐CLR) positively selected genes. Gene ontology analysis resulted in 41 biological process terms and six Kyoto Encyclopedia of Genes and Genomes pathways. Several genes and pathways were found to be involved in oxidative stress response, osmotic stress response, heat shock response, hair and skin properties, sweat gland development and sweating, feed intake and metabolism, and reproduction functions. The genes and pathways identified directly or indirectly contribute to the superior heat tolerance mechanisms in African cattle populations. The result will improve our understanding of the biological mechanisms of heat tolerance in African cattle breeds and opens an avenue for further study.     

Electrical properties of ultrafine nylon-6 nanofibers prepared via electrospinning

We report on the preparation and electrical characterization of nylon-6 nanofibers via electrospinning technique. During electrospinning, the polymer solution became highly ionized and emerging out of the micro-tip syringe by forming mesh-like ultrafine nanofibers structure in between the main fibers. The resultant nylon-6 nanofibers were well-oriented with uniform structure. The diameter of the ultrafine nanofibers (7 to 40 nm) is one order less than those of main fibers (100 to 200 nm). The current-voltage (I-V) measurements revealed a linear curve with an occurrence of negative differential resistance (NDR) behavior. The existence of NDR region in the nylon-6 nanofibers can be attributed to the tunneling current through the ultrafine structures. The fabrication of nanofibers, in the form of ultrafine mesh-like form, is relatively fast and inexpensive, and it paves the way to build up of new dimension for nano device applications.     

Effect of dietary substitution of sea tangle (ST), Laminaria japonica with rice bran (RB) on growth and body composition of juvenile abalone (Haliotis discus)

Dietary substitution effect of sea tangle (ST) with rice bran (RB) on growth and carcass composition of juvenile abalone (Haliotis discus) was determined. Juvenile abalone was acclimated to the experimental conditions for 4 weeks. Seventy juvenile abalone averaging 0.43 g were randomly distributed into each of the 18, 70 L plastic rectangular containers. The experimental diets were fed to abalone once a day at a satiation level with a little leftover. The feeding trial lasted for 16 weeks. Survival of abalone was not affected by dietary substitution of ST with RB. However, weight gain of abalone fed the RB40 diet was higher than that of abalone fed the all other diets except for the RB0 diet. No significant difference in weight gain was found in abalone fed between the RB0 and RB100 diets. SGR of abalone fed the RB40 diet was higher than that of abalone fed the all other diets. Also SGR of abalone fed the RB0 diet was higher than that of abalone fed the RB100 diet, but not different from that of abalone fed the RB20, RB60 and RB80 diets. Moisture, crude protein and ash content of the soft body of abalone were affected by dietary substitution of ST with RB. In conclusion, the 100% ST could be substituted with RB without a retardation of weight gain of abalone when the 20% ST was included into the experimental diet. However, the best growth performance was obtained in abalone fed the RB40 diet substituting 40% ST with RB.     

Comparative genetic analyses of Korean bat coronaviruses with SARS-CoV and the newly emerged SARS-CoV-2

BackgroundBats have been considered natural reservoirs for several pathogenic human coronaviruses (CoVs) in the last two decades. Recently, a bat CoV was detected in the Republic of Korea; its entire genome was sequenced and reported to be genetically similar to that of the severe acute respiratory syndrome CoV (SARS-CoV).ObjectivesThe objective of this study was to compare the genetic sequences of SARS-CoV, SARS-CoV-2, and the two Korean bat CoV strains 16BO133 and B15-21, to estimate the likelihood of an interaction between the Korean bat CoVs and the human angiotensin-converting enzyme 2 (ACE2) receptor.MethodsThe phylogenetic analysis was conducted with the maximum-likelihood (ML) method using MEGA 7 software. The Korean bat CoVs receptor binding domain (RBD) of the spike protein was analyzed by comparative homology modeling using the SWISS-MODEL server. The binding energies of the complexes were calculated using PRODIGY and MM/GBGA.ResultsPhylogenetic analyses of the entire RNA-dependent RNA polymerase, spike regions, and the complete genome revealed that the Korean CoVs, along with SARS-CoV and SARS-CoV-2, belong to the subgenus Sarbecovirus, within BetaCoVs. However, the two Korean CoVs were distinct from SARS-CoV-2. Specifically, the spike gene of the Korean CoVs, which is involved in host infection, differed from that of SARS-CoV-2, showing only 66.8%–67.0% nucleotide homology and presented deletions within the RBD, particularly within regions critical for cross-species transmission and that mediate interaction with ACE2. Binding free energy calculation revealed that the binding affinity of Korean bat CoV RBD to hACE2 was drastically lower than that of SARS-CoV and SARS-CoV-2.ConclusionsThese results suggest that Korean bat CoVs are unlikely to bind to the human ACE2 receptor.     

Preparation of zero-valent Co/N-CNFs as an immobilized thin film onto graphite disc for methanol electrooxidation

In this study, we developed new method to prepare one-pot current collector/electrode plate to be utilized in the fuel cell technology. In situ preparation of zero-valent N-doped Co carbon nanofibers (Co/N-CNFs) as an immobilized thin film onto graphite disc was achieved by electrospinning technique, followed by calcination at 1100 oC in argon atmosphere. This catalyst was used for methanol electrooxidation in alkaline media. The effects of nitrogen doping and immobilization on the activity and stability of the prepared catalysts were studied using cyclic voltammetry and chronoamperometry, respectively. SEM, TEM, EDX, XRD, and TGA were used to characterize the morphology and composition of Co/N-CNFs catalysts. The results showed that the electrocatalytic activity as well as the stability of Co/N-CNFs towards methanol electrooxidation in alkaline media were significantly affected by both nitrogen doping and immobilization of the catalyst on the graphite disc. Moreover, the methanol concentration has also affected the electrocatalytic activity of Co/N-CNFs-supported immobilized onto graphite disc and Co/N-CNFs-unsupported graphite disc.     

Growth and Body Composition Effects of Tuna Byproduct Meal Substituted for Fish Meal in the Diet of Juvenile Abalone,Haliotis discus

The effects on growth and body composition that result from tuna byproduct meal (TBM) substituted for fish meal in the diet of juvenile abalone, Haliotis discus, were determined. One thousand two hundred sixty juvenile abalone were randomly distributed into 18 70‐L plastic rectangular containers. Six experimental diets were prepared in triplicate. The TBM0 diet included 28% fish meal and 13% soybean meal as the protein source. Twenty‐five, 50, 75, and 100% of the fish meal were substituted with TBM. Finally, salted sea tangle was prepared. The essential amino acids, such as isoleucine, lysine, and valine, tended to decrease with the dietary substitution of TBM for fish meal in the experimental diets. The weight gain and specific growth rate (SGR) of abalone that were fed the TBM25 diet were higher than those of abalone that were fed the other diets. The crude protein content of the soft body of the abalone linearly decreased with the dietary substitution of TBM for fish meal. In conclusion, as much as 75% of the fish meal in the diet of abalone can be replaced with TBM without retardation in weight gain and SGR of the abalone when 28% fish meal was included.