Development and utilization of novel SSRs in foxtail millet [Setaria italica (L.) P. Beauv.]

Although the foxtail millet [Setaria italica (L.) P. Beauv.] is recently regarded as a model crop for studying functional genomics of biofuel grasses, its genetic improvement to some extent was limited due to the non‐availability of molecular markers, particularly the microsatellite markers and the saturated genetic linkage map. Considering this, we attempted to generate a significant number of microsatellite markers in cultivar ‘Prasad’. Two hundred and fifty‐six clones were sequenced to generate 41.82‐kb high‐quality sequences retrieved from genomic library enriched with dinucleotide repeat motifs. Microsatellites were identified in 194 (76%) of the 256 positive clones, and 64 primer pairs (pp) were successfully designed from 95 (49%) unique SSR‐containing clones. The 67.4% primer designing ability, 100% PCR amplification efficiency and 45.3% polymorphic potential in the parents of F₂ mapping population established the efficacy of genomic microsatellites. All the 64 microsatellite markers displayed high level of cross‐species amplification (~67%) in 10 millets and non‐millets species. These experimental findings suggest the utility and efficacy of SSRs in diverse genotyping applications, resolving QTLs, phylogenetic relationships and transferability in several important grass species.     

QTL analysis of morphological and developmental traits in the Ler × Cvi population of Arabidopsis thaliana

Drought frequently constrains production of wheat (Triticum aestivum L.), but development of tolerant cultivars is hampered by low heritability for drought tolerance and a lack of effective selection strategies. Our objective was to identify an optimum selection regime for wheat in drought-prone environments. Six-hundred entries derived from 10 crosses were developed by selection under continuous high moisture, alternating high with low moisture, alternating low with high moisture, and continuous low moisture conditions for five generations. The selections were evaluated in two low-yield, a medium-yield, and a high-yield environment in the Yaqui Valley, Sonora, Mexico. The mean performance of entries derived from a particular selection regime was dependant on the stress level of the evaluation environment. Lines developed and selected under continuous high moisture and continuous low-moisture regimes produced the highest mean yields in the low moisture evaluation environment. There was no relationship between continuous selection under either high yielding conditions or low yielding conditions and the mean performance of the resultant lines in their respective high and low yielding evaluation environments. The mean yield of lines selected using the alternating high/low moisture regime as well as the five highest yielding lines were superior in the HY environment, and had similar performance with other regimes under the low yielding evaluation environment. Our results indicate that alternating selection between high and low yielding environments is the most effective way to develop wheat germplasm adapted to environments where intermittent drought occurs. This revised version was published online in July 2006 with corrections to the Cover Date.     

Variant biochemical responses: intrinsic and adaptive system for ecologically different rice varieties

Journal of Crop Science and Biotechnology - India has a diverse range of agro-ecological conditions which support the cultivation of different rice varieties differing in the adaptation which is so...     

Variation of Phyllosphere Microflora of Different Rice Varieties in Sri Lanka and its Relationship to Leaf Anatomical and Physiological Characters

Anatomical and physiological characters of the leaf surface and its physico‐chemical environment substantially influence the density and diversity of phyllosphere‐inhabiting microorganisms, which may include natural antagonists of important pathogens. The objective of this investigation was to quantify the phyllosphere (i.e. leaf surface) microbial population in a range of rice varieties grown in Sri Lanka and to identify the leaf anatomical and physiological characters that determine the density and diversity of phyllosphere microbes. Fifteen rice varieties including both traditional and new high‐yielding varieties were used in a planthouse experiment and a field experiment in two consecutive seasons to quantify the phyllosphere microbial population and measure leaf characters that may influence it. There were highly significant intervarietal variations in the density and diversity of epiphytic bacterial, fungal and total microbial populations under both planthouse and field conditions. However, there was no difference between traditional and new, high‐yielding varieties in their capacity to harbour epiphytic microbes in the phyllosphere. Total microbial density (TMD) under both conditions showed positive correlations with leaf hair density, stomatal density and transpiration rate. Under planthouse conditions, TMD was also positively correlated with leaf hair length and negatively correlated with leaf temperature. These correlations can be explained in terms of providing favourable microsites on the phylloplane for epiphytic microbial growth.     

Potential of a novel antibiotic, 2-methylheptyl isonicotinate, as a biocontrol agent against fusarial wilt of crucifers

Screening for newer bioactive compounds from microbial metabolites resulted in the isolation of a novel antibiotic from the culture filtrate, Streptomyces sp 201, of a soil. The bioactive compound, with antifungal and antibacterial activity, was identified as 2-methylheptyl isonicotinate. The antifungal activity of live culture, culture broth and the isolated bioactive compound showed marked inhibition against dominant soil-borne phytopathogens such as Fusarium oxysporum Schlect, F moniliforme Sheldon, F semitectum Berkeley & Ravenel, F solani (Martius) Sacc and Rhizoctonia solani Kuehn. The compound had no effect on seed germination and seedling development as displayed by root and stem growth of the test plant species. In pot experiments with seedlings of cruciferous plants such as Raphanus sativus L (radish), Brassica campestris L (yellow mustard), Brassica oleracea var botrytis L (cauliflower), the antibiotic compound showed promising protective activity of 92% when seeds of the test plants were treated at a dose of 50 micrograms ml-1 prior to sowing. Seed treatment with a spore suspension (3 x 10(8) spores ml-1) of the Streptomyces sp 201 displayed protective activity in the range of 56-60%. Seeds coated with 2.5% methyl cellulose-amended spores of the antagonist showed protective activity in the range of 64-72%. Further, seed treatment with the culture filtrate of the antagonist also showed promising protective activity in the range of 64-84%.     

Comparison of virulence of various hantaviruses related to hemorrhagic fever with renal syndrome in newborn mouse model

The virulence of hantaviruses that are antigenically related but have different genetic characteristics from the prototype of hantavirus, Hantaan (HTN) virus, was examined in newborn mice. The H5 and B78 strains of the Amur (AMR) genotype, the Bao14 strain of the Far East (FE) genotype, and the 76-118 strain of HTN virus were inoculated subcutaneously (1focus-forming unit; FFU) into newborn mice. All of the AMR and FE genotype viruses inoculated mice were died by 16 days post-infection (dpi) and 21 dpi, respectively, while 50% of the HTN virus inoculated mice survived until 30 dpi. The AMR and FE genotype viruses inoculated mice had high viral titers in the lung (1.3x10(6) to 1.3x10(8) FFU/gram [g] tissue) , brain (2.1x10(7) to 1.2x10(9) FFU/g tissue), and kidney(2.5x10(5) to 1.6x10(7) FFU/g tissue), and showed a detectable level of antibodies (titers 1:16-1:32) at 14 dpi. In contrast, the HTN virus infected mice had viruses only in the lungs at low titers (1.1-5.3x10(5) FFU/g tissue). Observations of body-weight changes revealed that the AMR and FE genotype viruses inoculated mice had lower growth rates than the HTN virus inoculated mice. These data suggest that the AMR and FE genotype viruses are more virulent than the HTN virus in newborn mice.     

Evaluation of a single subcutaneous infusion of carboplatin as adjuvant chemotherapy for dogs with osteosarcoma: 17 cases (2006-2010)

Objective-To evaluate adverse effects and survival times in dogs with osteosarcoma that received a single SC infusion of carboplatin as adjunctive chemotherapeutic treatment following limb amputation or limb-sparing surgery. Design-Retrospective case series. Animals-17 client-owned dogs with spontaneously occurring osteosarcoma. Procedures-Medical records of dogs that underwent limb amputation or limb-sparing surgery followed by a single continuous SC infusion of carboplatin (total dose, 300 mg/m(2) infused over 3, 5, or 7 days) were evaluated. Signalment, tumor location, type of surgery (amputation or limb-sparing), duration of carboplatin infusion, results of hematologic and serum biochemical analyses, and adverse effects were recorded. Kaplan-Meier survival analysis was performed. Results-Median survival time for all dogs was 365 days. Nine dogs had adverse bone marrow-related (hematologic) effects, 1 had adverse gastrointestinal effects, and 7 had infections at the surgical site. No significant differences were detected in survival times of dogs grouped according to tumor location, type of surgery, duration of carboplatin infusion, or development of postoperative infection. Conclusions and Clinical Relevance-Median survival time and adverse effects in dogs with osteosarcoma that received a single SC infusion of carboplatin over a 3-, 5-, or 7-day period as adjunctive treatment following limb amputation or limb-sparing surgery were comparable to those of previously reported chemotherapy protocols requiring IV drug administration over several weeks. Further investigation is needed to evaluate the efficacy of this protocol as adjunctive treatment for osteosarcoma and other tumors in dogs.     

Effect of consumption of finger millet on hyperglycemia in non-insulin dependent diabetes mellitus (NIDDM) subjects

The effect of consumption of finger millet based diets on hyperglycemiawas studied in 6 noninsulin dependent diabetes mellitus (NIDDM) subjects.All the experimental diets were planned to be isocaloric and also tocontain 75 g equivalent of carbohydrate load so that glycemic responsecould be compared with a 75 g glucose load. The glycemic response tobreakfast items compared to that of glucose was determined by comparingthe areas under the 2 hr glucose response curve. Consumption of fingermillet based diets resulted in significantly lower plasma glucose levels,mean peak rise, and area under curve which might have been due to thehigher fiber content of finger millet compared to rice and wheat. Thelower glycemic response of whole finger millet based diets may also havebeen due to the presence of antinutritional factors in whole finger milletflour which are known to reduce starch digestibility and absorption.     

Selection of Yield-Associated Morphological and Biochemical Traits Using Correlation and Path Coefficient Analysis in Potato (<Emphasis Type="Italic">Solanum tuberosum</Emphasis> L.) in the Foothills of North-Western Himalayas

The objective of the study was to assess the direct and indirect effects of 13 important morphological and biochemical traits on yield enhancement in 28 advanced breeding lines of potato (Solanum tuberosum L.) in the foothills of north-western Himalayas. Tuber yield was positively correlated with number of tubers per plant (r?=?0.76), number of stems per plant (r?=?0.53), number of leaves per plant (r?=?0.43) and tuber weight (r?=?0.37). Furthermore, tuber yield exhibited a significant negative correlation with days to maturity (r?=???0.39). Days to 50% emergence had a significant negative correlation with protein content (r?=???0.42). Path analysis revealed that the components of yield, number of tubers per plant and tuber weight, had high positive direct effects (0.876 and 0.618, respectively) on tuber yield, whereas the effects of other traits were low (≤?0.128). Furthermore, tuber weight had an indirect negative effect on tuber yield through the number of tubers. Tuber size had a low correlation (0.19) with tuber yield because a positive indirect effect (0.451) through tuber weight was balanced by a negative indirect effect (??0.254) through tuber number. The number of stems and number of leaves had positive indirect effects (0.377 and 0.377, respectively) on tuber yield through tuber numbers, whereas days to maturity had a negative indirect effect (??0.298) through tuber numbers. There were virtually no indirect effects through the biochemical traits. The implications for potato breeding are discussed.     

Process Optimization for the Development of Nutritionally Enhanced Nuggets using Ficus geniculata: A Nutritional Approach

Plant Foods for Human Nutrition - Ficus geniculata (FG) is one of the underutilized fig species in India and throughout the world. However, the different parts of the plant have numerous...