Combining ability for rancidity and associated traits in pearl millet (Pennisetum glaucum)

Pearl millet occupies an important place in attaining nutritional security in marginal areas; however, as it develops off-flavours, it is less preferred by food industry. The objective of the current study was to determine the variations in rancidity-related traits and estimate the combining ability of inbreds and hybrids for these traits under varied environmental conditions. In this study, 32 hybrids were developed from eight lines and four testers using line × tester mating design and evaluated along with parents and checks 86M86 and HHB 67 for yield and rancidity-associated traits in three environments. The hybrids L7T2 and L6T1 are identified as promising hybrids for grain yield and rancidity. Higher variance due to specific combining ability and predictability ratio for grain yield and rancidity-associated characters indicate the predominance of non-additive gene action. The tester T1 recorded a significant negative GCA effect with low alcoholic acidity. A significant and positive SCA for grain yield was observed in L3T1 and L7T2, whereas for rancidity in L5T4. Alcoholic acidity showed a significant positive association with 1000 seed weight, lipase and lipoxygenase in parents and negative association with 1000 seed weight in hybrids.     

Evaluation of housekeeping genes as references for quantitative real-time PCR analysis of gene expression in the murrel <Emphasis Type="Italic">Channa striatus</Emphasis> under high-temperature stress

Quantitative real-time polymerase chain reaction is the most advanced method of quantifying gene expression studies; however, the significance of the obtained results strongly depends on the normalization of the data to compensate for differences between the samples. In the present study, expression analysis of six different constitutively expressed genes viz. 18S ribosomal RNA, glyceraldehyde-3-phosphate dehydrogenase (gapdh), beta actin (βactin), ribosomal binding protein L13, tubulin and TATA-box-binding protein (tbp) were carried out to test their efficacy as reference genes in three different tissues, namely liver, gill and muscle of murrel Channa striatus exposed to high temperature for variable time periods. The stability and suitability of the genes were determined by using bioinformatic tools: GeNorm, NormFinder and BestKeeper. Based on the results, tub/βactin could be used as the reference genes for liver and gill tissues and βactin/gapdh could be the reference genes for muscle tissues in Channa striatus under both short- and long-term thermal stress.     

Evidence for two predominant viral lineages,recombination and subpopulation structure in begomoviruses associated with yellow vein mosaic disease of okra in India

Yellow vein mosaic disease (YVMD) caused by whitefly‐transmitted begomoviruses is an economically significant viral disease of okra. In this study, a survey of begomoviruses associated with YVMD was carried out in eight states and two union territories of India. A total of 92 full‐length DNA‐A components were sequenced and characterized. Sequence comparisons and population structure analysis revealed the existence of four begomovirus species. Two novel species were detected with several recombinationally derived genome fragments that probably originated from begomoviruses known to infect malvaceous and non‐malvaceous hosts. Among the four species, Bhendi yellow vein Maharastra virus (BYVMaV) and Bhendi yellow vein Madurai virus (BYVMV) were found to be predominant in okra, with BYVMV having a pan‐India distribution. There was evidence for a high degree of genetic variability and subpopulation structure within these four species. Neutrality tests suggested the occurrence of purifying selection acting upon these populations. The results of the current study have uncovered the diversity and genetic structure of okra‐infecting begomoviruses in India and generated potentially useful information for developing management strategies for YVMD.     

Fatty acid composition in each structural part of soybean seed and sprout

Fatty acid composition and C_18:2:C_18:3 of soybean seed and sprout is important for soy-industries to manufacture quality products. Six soybean varieties were analyzed by gas chromatography to determine fatty acid composition and linoleic to linolenic acid ratio (C_18:2:C_18:3) in seed, sprout, and their structural parts. In the case of whole seed and its structural parts, significant variation in fatty acid composition and C_18:2:C_18:3 were observed between varieties except palmitic acid (C_16:0), while all the parameters were significantly different for seed parts. Significant interactions of variety with seed parts were observed for oleic acid (C_18:1), C_18:2 and C_18:2:C_18:3. The highest saturated fatty acid, C_18:1 and polyunsaturated fatty acid were recorded in seed coat, cotyledon, and seed axis, respectively. The lowest C_18:2:C_18:3 was found in seed axis. In the case of sprout study, variety had significant effect on all the parameters observed for whole sprout, cotyledon, root, and except C_18:3 for hypocotyl. Culture days had significant effect on C_16:0, C_18:2 and C_18:3 in whole sprouts, while only on C_18:3 and C_18:2:C_18:3 in cotyledon. For hypocotyl, culture days had significant effect on C_18:1, C_18:2 and C_18:2:C_18:3, however, C_16:0, C_18:1, C_18:3, and C_18:2:C_18:3 were significantly different in root. In sprout, days and variety interacted significantly for C_16:0, C_18:3 and C_18:2:C_18:3, and C_18:1, C_18:2, C_18:3, and C_18:2:C_18:3, respectively for whole, cotyledon, and root. The significantly lowest C_18:2:C_18:3 (1.1) was observed in hypocotyl and root of Hwangkeumkong in 5 days. Knowledge of fatty acid composition and C_18:2:C_18:3 of seed, sprout, and their parts could be applicable for oil and other soy-food industries to make quality products.     

Improving soil organic carbon pools through inclusion of summer mungbean in cereal-cereal cropping systems in Indo-Gangetic plain

Long-term effect of mungbean inclusion in lowland rice-wheat and upland maize-wheat systems on soil carbon (C) pools, particulate organic C (POC), and C-stabilization was envisaged in organic, inorganic and without nutrient management practices. In both lowland and upland systems, mungbean inclusion increased very-labile C (Cfrac₁) and labile C (Cfrac₂) in surface soil (0–0.2 m). Mungbean inclusion in cereal-cereal cropping systems improved POC, being higher in lowland (107.4%). Lowland rice-based system had higher passive C-pool (11.1 Mg C ha^?1) over upland maize-based system (6.6 Mg C ha^?1) indicating that rice ecology facilitates the stabilization of passive C-pool, which has longer persistence in soil. Organic nutrient management (farmyard manure + full crop residue + biofertilizers) increased Cfrac₁ and carbon management index (CMI) over inorganic treatment. In surface soil, higher CMI values were evident in mungbean included cropping systems in both lowland and upland conditions. Mungbean inclusion increased grain yield of cereal crops, and yield improvement followed the order of maize (23.7–31.3%) > rice (16.9–27.0%) > wheat (lowland 7.0–10.7%; upland 5.4–16.6%). Thus, the inclusion of summer mungbean in cereal-cereal cropping systems could be a long-term strategy to enrich soil organic C and to ensure sustainability of cereal-cereal cropping systems.     

Endophytes from maize with plant growth promotion and biocontrol activity under drought stress

In the present study, 39 endophytic bacteria were isolated from different crops with main focus on maize roots and seeds. Endophytes were screened for drought stress tolerance, plant growth promoting (PGP) traits and antifungal activity. Out of 39 isolates, 32 could show drought tolerance up to–1.02 matric potential (MPa) and exhibited most of the plant growth promoting traits. But, only five isolates could show antagonistic activity against plant fungal pathogens. Based on the results, 10 promising isolates namely FTR, NFTR, FMZR9, FMZR2, MZ30V92, MRC12, MRC31, MRC33, MRC41 and MRR2 were selected and identified using biochemical and 16S rDNA gene sequencing as Pseudomonas aeruginosa (strains FTR and NFTR), Pseudomonas monteilii (strain FMZR2), Pseudomonas putida (strain FMZR9), Acitenobacter brumalii (strain MZ30V92), Enterobacter asburiae (strain MRC12), Sinorhizobium meliloti (strain MRC31), Pseudomonas thivervalensis (strain MRC33), Pseudomonas fulva (strain MRC41), and Pseudomonas lini (strain MRR2). Further, at–1.02 MPa all the 10 isolates showed PGP traits, and 3 isolates (FTR, NFTR and MRC12) showed antifungal activity. Thus, indicating that drought tolerant plant growth promoting antagonistic endophytic bacteria (PGPAE) helps in plant growth and disease management under drought stress.     

Soil quality assessment under shifting cultivation and forests in Northeastern Himalaya of India

The study aimed to evaluate the impact of shifting cultivation on soil quality, in Wokha district of Nagaland, using weighted soil quality index (SQIw). Four forest sites and three sites under shifting cultivation were selected and physical (texture and bulk density) and chemical (pH, electrical conductivity, cation exchange capacity, organic carbon, available N, P, K, exchangeable cations) parameters were analyzed. The SQIw was calculated on a minimum data set selected by principal component analysis, followed by varimax rotation algorithm and through subsequent normalization of the parameters using the linear scoring function. Significant (P < 0.05) variations in SQIw were found across the depth of the soil and land use according to severity of factors associated with land use. Three different classes of soil quality were also identified: high quality (SQIw > 0.70) for two forest soils (FS1 and FS2) and land under shifting cultivation (JH1), low quality (SQIw < 0.50), only to FS3, and intermediate quality (0.50 < SQI < 0.70) in all other soils. The approach used in this study proved to be sensitive to evaluate the soil quality, however further research is required to better understand the sustainability of shifting cultivation by including more physical, biological and chemical indicators.     

Suppression of Botryosphaeria canker of apple by arbuscular mycorrhizal fungi

Stem brown canker or Botryosphaeria canker disease impairs the growth and kills the shoots, limbs and even trunks of infected apple trees. Apple roots are usually colonized by arbuscular mycorrhizal fungi, which may have a positive influence on plant growth and suppression of diseases. In order to assess the efficacy of AM to suppress the disease severity and plant growth enhancement, nine AMF inoculation treatments (Sclerocystis dussi, Glomus intraradices, G. fasciculatum, G. bagyaraji, G. leptotichum, G. monosporum, Gigaspora margarita, a mixed AM culture and a non-mycorrhizal control treatment) were used in this present study. Two-year-old potted apple plants, maintained under glasshouse conditions, were either pre-inoculated with AMF followed by stem inoculation with Botryosphaeria ribis or simultaneously inoculated with Botryosphaeria ribis and AM. The results indicated that the incidence of canker was less severe in plants inoculated with AMF in comparison to non-mycorrhizal control. Timing of inoculation also had a significant effect on disease development and plant survival. Plants pre-inoculated with mycorrhiza performed better over those inoculated simultaneously with Botryosphaeria ribis and AM fungi. Furthermore, AM inoculation resulted in improved survival and growth of AMF-colonized plants; though, it varied by species of AM fungi utilized.