Connectivity in Heterogeneous Landscapes: Analyzing the Effect of Topography

Animal response to landscape heterogeneity directs dispersal and affects connectivity between populations. Topographical heterogeneity is a major source of landscape heterogeneity, which is rarely studied in the contexts of movement, dispersal, or connectivity. The current study aims at characterizing and quantifying the impacts of topography on landscape connectivity. We focus on ‘hilltopping’ behavior in butterflies, a dispersal-like behavior where males and virgin females ascend to mountain summits and mate there. Our approach integrates three elements: an individual-based model for simulating animal movements across topographically heterogeneous landscapes; a formula for the accessibility of patches in homogenous landscapes; and a graphical analysis of the plots of the simulation-based vs. the formula-based accessibility values. We characterize the functional relationship between accessibility values and landscape structure (referred to as ‘accessibility patterns’) and analyze the influence of two factors: the intensity of the individuals’ response to topography, and the level of topographical noise. We show that, despite the diversity of topographical landscapes, animal response to topography results in the formation of two, quantifiable accessibility patterns. We term them ‘effectively homogeneous’ and ‘effectively channeled’. The latter, in which individuals move toward a single summit, prevails over a wide range of behavioral and spatial parameters. Therefore, ‘channeled’ accessibilities may occur in a variety of landscapes and contexts. Our work provides novel tools for understanding and predicting accessibility patterns in heterogeneous landscapes. These tools are essential for linking movement behavior, movement patterns and connectivity. We also present new insights into the practical value of ecologically scaled landscape indices.     

Genetic variation among <Emphasis Type="Italic">Fusarium</Emphasis> isolates from onion,and resistance to <Emphasis Type="Italic">Fusarium</Emphasis> basal rot in related <Emphasis Type="Italic">Allium</Emphasis> species

The aim of this research was to study levels of resistance to Fusarium basal rot in onion cultivars and related Allium species, by using genetically different Fusarium isolates. In order to select genetically different isolates for disease testing, a collection of 61 Fusarium isolates, 43 of them from onion (Allium cepa), was analysed using amplified fragment length polymorphism (AFLP) markers. Onion isolates were collected in The Netherlands (15 isolates) and Uruguay (9 isolates), and received from other countries and fungal collections (19 isolates). From these isolates, 29 were identified as F. oxysporum, 10 as F. proliferatum, whereas the remaining four isolates belonged to F. avenaceum and F. culmorum. The taxonomic status of the species was confirmed by morphological examination, by DNA sequencing of the elongation factor 1-α gene, and by the use of species-specific primers for Fusarium oxysporum, F. proliferatum, and F. culmorum. Within F. oxysporum, isolates clustered in two clades suggesting different origins of F. oxysporum forms pathogenic to onion. These clades were present in each sampled region. Onion and six related Allium species were screened for resistance to Fusarium basal rot using one F. oxysporum isolate from each clade, and one F. proliferatum isolate. High levels of resistance to each isolate were found in Allium fistulosum and A. schoenoprasum accessions, whereas A. pskemense, A. roylei and A. galanthum showed intermediate levels of resistance. Among five A. cepa cultivars, ‘Rossa Savonese’ was also intermediately resistant. Regarding the current feasibility for introgression, A. fistulosum, A. roylei and A. galanthum were identified as potential sources for the transfer of resistance to Fusarium into onion.     

Carbon Sequestration in Kiwifruit Orchard Soils at Depth to Mitigate Carbon Emissions

Management practices designed to increase carbon sequestration via perennial tree crops are potential tools to mitigate the consequences of climate change. Changes in orchard management could enable growers to meet eco-verification market demands for products with a low carbon footprint and potentially exploit the emerging business opportunity in carbon storage, while enhancing the delivery of ecosystem services that depend on soil carbon stocks. However, there is no standard methodology to verify any potential claims of carbon storage by perennial vine crops. We developed a robust methodology to quantify carbon storage in kiwifruit orchards. Soil carbon stocks (SCS) were determined in six depth increments to 1 m deep in two adjacent kiwifruit blocks, which had been established 10 (“young”) and 25 (“old”) years earlier. We used a space-for-time analysis. Our key results were the young and old kiwifruit block stored about 139 and 145 t C/ha to 1 m depth. Between 80–90 percent of the SCS were stored in the top 0.5 m, and 89–95 percent in the top 0.7 m; there was no significant difference between the SCS in row and alley to a depth of 0.5 m; a CV of 5–15 percent indicates that 4–10 cores are needed for 80 percent confidence in the estimated SCS; we recommend separating each core into the depths 0–0.1, 0.1–0.3, 0.3–0.5, and 0.5–1 m to allow the assessment of SCS dynamics; we detected a weak spatial pattern of the SCS only for the old kiwifruit block with a range of about 3 m. A sampling bay along a vine row should have a maximum length of 3 m. We then assessed SCS in more than sixty kiwifruit orchards throughout New Zealand. They stored on average 174.9 ± 3 t C ha^?1 to 1 m depth. On average, 51 percent of the SCS down to 1 m depth were stored in the top 0.3 m, which is the standard depth according to the Kyoto protocol. About 72 percent of the SCS to 1 m depth were captured when increasing the sampling depth to 0.5 m. These results underscore the necessity to analyze SCS in an orchard to at least 0.5 m deep. Using the same methodology to 1 m deep, we determined SCS in two wine grape vineyards on shallow, stony alluvial soils. We found a difference between vineyard and adjacent pasture SCS of nearly 16 t/ha. As the vines are 25 years old, this equates to carbon sequestration rates of 640 kg ha^?1 yr^?1. Our results of the space-for-time analysis also showed that all sequestration had occurred below 0.5 m. Therefore, we decided to sample C to a greater depth. In a 30-year old kiwifruit orchard and an adjacent pasture, SCS was measured to 9 m deep. In the kiwifruit orchard, we found a sequestration rate of 6.3 tons of C per hectare per year greater than in the adjacent pasture that was the antecedent land use.     

Detection of key factors in the extraction and quantification of lycopene from tomato and tomato products

The analytical process of lycopene extraction and photometrical determination was critically examined for raw tomato and processed tomato products by means of a 2 IV (15-10) Plackett-Burman experimental design in order to identify the key factors (KFs) involved. Fifteen apparent key factors (AKFs) reported in the literature were selected: sample weight (X1); volume of extraction solution (X2); antioxidant concentration (BHT, X3); neutralizing agent concentration (MgCO 3, X4); light presence during lycopene extraction (X5), homogenization velocity (X6) and time (X7), agitation time (X8), and temperature (X9) during the extraction process; water volume for separation of polar/nonpolar phases (X11); presence of inert atmosphere throughout the process (X12); time (X13), temperature (X14), and light presence (X10) during separation of phases and time delay for reading (X15). In general, higher lycopene concentrations in samples led to a higher number of key factors (KF). Thus, for raw tomato (lycopene range 1.22-2.29 mg/100 g) no KF were found, whereas for tomato sauce (lycopene range from 5.80 to 8.60 mg/100 g) one KF (X4) and for tomato paste (lycopene range from 35.80 to 51.27 mg/100 g) five KFs (X1, X2, X4, X11, and X12) were detected. For lycopene paste, X1 and X2 were identified as the KFs with the greatest impact on results, although in fact the X1/X2 ratio was the real cause. The results suggest that, with increased processing, the physical and chemical structure of lycopene becomes less important since the identified KFs explain almost 90% of variability in tomato paste but only 32% in raw tomato.     

Organic carbon sequestration in earthworm burrows

Earthworms strongly affect soil organic carbon cycling. The aim of this study was to determine whether deep burrowing anecic earthworms enhance carbon storage in soils and decrease C turnover. Earthworm burrow linings were separated into thin cylindrical sections with different distances from the burrow wall to determine gradients from the burrow wall to the surrounding soil. Organic C, total N, radiocarbon (¹⁴C) concentration, stable isotope values (δ¹³C, δ¹⁵N) and extracellular enzyme activities were measured in these samples. Anecic earthworms increased C stocks by 270 and 310 g m^?2 accumulated in the vertical burrows. C-enrichment of the burrow linings was spatially highly variable within a distance of millimetres around the burrow walls. It was shown that C accumulation in burrows can be fast with C sequestration rates of about 22 g C m^?2 yr^?1 in the burrow linings, but accumulated C in the burrows may be mineralised fast with turnover times of only 3–5 years. Carbon stocks in earthworm burrows strongly depended on the earthworm activity which maintains continuous C input into the burrows. The enhanced extracellular enzyme activity of fresh casts was not persistent, but was 47% lower in inhabited burrows and 62% lower in abandoned burrows. Enzyme activities followed the C concentrations in the burrows and were not further suppressed due to earthworms. Radiocarbon concentrations and stable isotopes in the burrow linings showed an exponential gradient with the youngest and less degraded organic matter in the innermost part of the burrow wall. Carbon accumulation by anecic earthworm is restricted to distinct burrows with less influence to the surrounding soil. Contrary to the initial hypothesis, that organic C is stabilised due to earthworms, relaxation time experiments with nuclear magnetic resonance spectroscopy (NMR) did not reveal any enhanced adsorption of C on iron oxides with C stabilising effect. Our results suggest that earthworm activity does not substantially increase subsoil C stocks but burrows serve as fast ways for fresh C transport into deep soil horizons.     

Expression of interferon gamma in the brain of cats with natural Borna disease virus infection

Borna disease virus (BDV) is a neurotropic, negative-stranded RNA virus, which causes a non-suppurative meningoencephalomyelitis in a wide range of animals. In cats, BDV infection leads to staggering disease. In spite of a vigorous immune response the virus persists in the central nervous system (CNS) in both experimentally and naturally infected animals. Since the CNS is vulnerable to cytotoxic effects mediated via NK-cells and cytotoxic T-cells, other non-cytolytic mechanisms such as the interferon (IFN) system is favourable for viral clearance. In this study, IFN-γ expression in the brain of cats with clinical signs of staggering disease (N=12) was compared to the expression in cats with no signs of this disease (N=7) by quantitative RT-PCR. The IFN-γ expression was normalised against the expression of three reference genes (HPRT, RPS7, YWHAZ). Cats with staggering disease had significantly higher expression of IFN-γ compared to the control cats (p-value ≤ 0.001). There was no significant difference of the IFN-γ expression in BDV-positive (N=7) and -negative (N=5) cats having clinical signs of staggering disease. However, as BDV-RNA still could be detected, despite an intense IFN-γ expression, BDV needs to have mechanisms to evade this antiviral immune response of the host, to be able to persist.     

导入LPAAT和KCS基因对油菜种子芥酸含量的影响

采用农杆菌介导法,以下胚轴为转化受体,将溶血性磷脂酸酰基转移酶（LPAAT）和酮脂酰辅酶A合成酶（KCS）基因导入2种不同基因型（“Drakkar”和“Maplus”）的甘蓝型油菜,共获得247株再生植株,其再生频率分别为15.1%和2.0%。PCR检测和Southern杂交分析证实,外源基因已整合到油菜基因组中,转化频率分别为3.6%和0.7%。种子中芥酸含量因外源基因的导入使零芥酸油菜“Drakkar”提高到10.5%,高芥酸品种“Maplus”提高了5.0%,最高达62.8%。     

Equine Multinodular Pulmonary Fibrosis in association with asinine herpesvirus type 5 and equine herpesvirus type 5: a case report

A standardbred gelding with a history of 10 days pyrexia and lethargy was referred to the Equine Hospital at the Swedish University of Agricultural Sciences in Uppsala, Sweden.The horse had tachypnea with increased respiratory effort and was in thin body condition. Laboratory findings included leukocytosis, hyperfibrinogenemia and hypoxemia. Thoracic radiographs showed signs of pneumonia with a multifocal nodular pattern, which in combination with lung biopsy findings indicated Equine Multinodular Pulmonary Fibrosis (EMPF). EMPF is a recently described disease in adult horses with clinical signs of fever, weight loss and respiratory problems. The pathological findings include loss of functional pulmonary parenchyma due to extensive nodular interstitial fibrosis which has been related to infection with the equine herpesvirus type 5 (EHV-5). In this case, lung biopsy and tracheal wash samples tested positive for both asinine herpesvirus type 5 (AHV-5) and EHV-5 using PCR assays. The horse failed to respond to treatment and was euthanized for humane reasons. Postmortem examination confirmed the diagnosis of EMPF. This case suggests that not only EHV-5 alone should be considered in association with the development of this disease.     

Establishment strategies for poplars,including mulch and plant types,on agricultural land in Sweden

Biomass from forestry is one of the largest components of Sweden’s renewable resources. Poplars are currently the highest producing tree species available and are therefore natural choices for biomass-oriented production. Growing poplars has been of most interest on agricultural land, but the knowledge and experience about their cultivation is still limited. Factors that have a large impact on the regeneration results are plant material, competing vegetation, browsing and damage caused by voles or climatic factors. Due to large establishment costs, there is a need to find methods to secure the establishment both biologically and economically. In this study the effect of plastic mulch in combination with three different plant types (short cuttings, long cuttings and rooted plants) were tested at three different sites. Five years after planting, the overall effect of mulch was an improved plant survival and growth. In most cases, long cuttings outperformed short cuttings and rooted plants. Clonal differences were present, indicating the importance of using plant material adapted to site conditions. All sites were heavily affected by browsing and during the experimental period 100% of the plants were damaged at some point. Planting poplars without fencing is therefore doubtful. Results from this study conclude that poplars can be established with success on agricultural land if proper measures are used depending on the site to be planted.