Identification and characterization of SNPs in released,landrace and wild accessions of mungbean (Vigna radiata (L.) Wilczek) using whole genome re-sequencing

Journal of Crop Science and Biotechnology - Mungbean [Vigna radiata (L.) R. Wilczek var. radiata] is vital grain legume having nutritional and socio-economic importance, especially in the...     

Risk analysis of non-native three-spot cichlid,Amphilophus trimaculatus, in the River Cauvery (India)

The three-spot cichlid Amphilophus trimaculatus (Günther) is an ornamental fish known to be invasive but has not been assessed for India. The present study confirmed this non-native species’ identity using conventional and molecular methods, as well as its occurrence in the River Cauvery, the first for this species in a lotic environment outside its native range. Gut content analysis indicated a diet of predominantly insects. The river's water quality and habitat were conducive for the species’ growth and reproduction. Using the Aquatic Species Invasiveness Screening Kit, A. trimaculatus was ranked as posing a “high” risk of being invasive in the River Cauvery, with climate match analysis showing 58% similarity with the species’ native range. Vector and pathway analysis found that A. trimaculatus was introduced to India via the aquarium trade, although consignment origin remains unknown, and the most likely means of entry into the river and its tributaries was the species’ escaping from holding facilities. Subsequent dispersal and impact of the species on native fauna are discussed. The study's outcomes demonstrate the importance of using risk analysis protocols to inform management of non-native species in India, with suggestions provided for immediate and long-term measures for the species’ management.     

Genetic analysis of sodium content and Na/K ratio in relation to salinity tolerance in pearl millet Pennisetum glaucum (L.) R. Br.

Genetic analysis of sodium and sodium/potassium (Na/K) ratios in leaf and stem was carried out through diallel analysis involving two tolerant, one moderately tolerant, and two sensitive genotypes as parents. Three-week-old seedlings were subjected to a critical level of salinization (17 decisiemens per meter of electrical conductivity). Leaf and stem sampling (from 5 parents and 20 hybrids arranged in a randomized block design with three replications of 10 each) was done 30 days after salinization when susceptible parents were severely effected. Predominance of non-additive gene action for stem sodium and dominance component for leaf Na/K were noticed while both additive and non-additive components played a significant role for stem Na/K. A single group of genes seems to be operative for these characters. Hybrids produced by crossing the two sensitive parents were tolerant suggesting genetic complementation and involvement of different loci in the two parents for salinity tolerance. The overall dominant nature of tolerance and the additive gene action for these salinity related characters suggested the possibility of breeding pearl millet lines through hybridization and selection to pyramid the favorable genes.     

Characterization of Longidorus helveticus (Nematoda: Longidoridae) from the Czech Republic

Longidorus helveticus was found at two out of 285 sampling sites for the first time in the Czech Republic. Females, males and juvenile stages were analyzed morphologically and morphometrically. The morphological identification of samples was verified by polymerase chain reaction using a species specific primer. Four markers of ribosomal DNA (18S, ITS1, ITS2, D2-D3 expansion segments of 28S rRNA) and two markers of mitochondrial DNA (cox1 and nad4) were sequenced and analyzed and compared with published gene sequences of other populations of L. helveticus. The partial mitochondrial cytochrome c-oxidase subunit 1 gene and partial nicotinamide dehydrogenase subunits 4 gene showed relatively high genetic variation within the species compared with ribosomal DNA markers.     

Purification, characterization and evaluation of insecticidal activity of trypsin inhibitor from Albizia lebbeck seeds

A Bowman-Birk inhibitor with activity against gut proteases of Helicoverpa armigera was extracted in 0.1 M sodium phosphate buffer from defatted seed flour of Albizia lebbeck. It was purified to 29.62 folds with 51.43% recovery using ammonium sulfate precipitation, gel filtration chromatography on Sephadex G-100 column and ion exchange chromatography on DEAE-Sephadex A50. The purified protein had a molecular weight of 12,303 daltons as determined by SDS-PAGE. It was found to be heat stable up to 60°C and had two pH optima of 7.5 and 9.0. The inhibitor exhibited non-competitive pattern of inhibition with a low Ki value of 0.2 μM. The inhibitor was found to be susceptible to varying concentrations of reducing agents like DTT and 2-mercaptoethanol, thereby indicating the role of disulphide bridges in maintaining its three dimensional structure and stability. The purified inhibitor caused mortality and suppressed larval growth of Pieris brassicae larvae. It was also found to be effective against gut trypsin extracted from Spodoptera littoralis. The sequence of the genes encoding for such inhibitors can be determined and the genes expressing protease inhibitors can be used in vegetable crops to confer resistance against insect pests and other plant pathogens.     

Gill epithelium of an angler catfish,Chaca chaca (Siluriformes,Chacidae): Enzyme and glycoprotein histochemistry

A series of histochemical techniques have been employed to localize alkaline phosphatase, acid phosphatase, non-specific esterase, catalase and peroxidase; and to visualize and characterize glycoprotein (GPs) moieties in the epithelium of gill arch, gill filaments and secondary lamellae of an angler catfish Chaca chaca. The epithelium of gill arch and gill filament shows strong alkaline phosphatase activity in the deeper layer epithelial cells; strong non-specific esterase activities in the outer layer epithelial cells; and weak acid phosphatase activity throughout the epithelium. The activity of these enzymes in the secondary lamellae is weak. The catalase and peroxidase show strong activities in the blood cells of the secondary lamellae. Various classes of GPs have been identified and characterized in the mucous secretions of the gill epithelium of C. chaca. These include—GPs with oxidizable vicinal diols, GPs with sialic acid residues without O-acyl substitution and GPs with O-sulphate esters. The functional significance of different enzymes in gill epithelium and the GPs in the mucus secreted on the surface has been discussed with the physiology of the gills in relation to the characteristic habit and habitat of the fish.     

Population structure,gene flow and genetic diversity analyses based on agro-morphological traits and microsatellite markers within cultivated and wild germplasms of okra [Abelmoschus esculentus (L.) Moench.]

Genetic Resources and Crop Evolution - Okra [Abelmoschus esculentus (L.) Monech.] is an annual herb of the family Malvaceae and has tremendous nutritional and industrial potential. However, the...     

Screening of Yardlong bean (Vigna unguiculata (L.) Walp.ssp. unguiculata cv.-gr. sesquipedalis) genotypes for seed,yield and disease resistance traits

Genetic Resources and Crop Evolution - Yardlong bean genotypes have wide variability in seed coat colours. This study sought to screen of yardlong bean genotypes based on seed coat colour,...     

Seed inoculation with <Emphasis Type="Italic">Bacillus</Emphasis> spp. improves seedling vigour in oil-seed plant <Emphasis Type="Italic">Jatropha curcas</Emphasis> L.

Jatropha (Jatropha curcas L.) is a non-edible oil-seed plant with adaptability to marginal semi-arid lands and wastelands. The Indian Government is promoting jatropha to reduce dependence on the crude oil and to achieve energy independence by the year 2012, under the National Biodiesel Mission. Selected strains of Bacillus spp., either supplemented with or without chitin, were tested for their ability to promote growth of jatropha seedlings in pot culture studies. The strains supported growth of jatropha seedlings up to 42 days after sowing. Among all strains, Bacillus pumilus (IM-3) supplemented with chitin showed over all plant growth promotion effect resulting in enhanced shoot length (113%), dry shoot mass (360%), dry root mass (467%), dry total plant mass (346%), leaf area (256%), and chlorophyll content (74%) over control. Treating seeds with strain IM-3 without chitin resulted in enhanced dry shoot mass (473%), dry total plant mass (407%), and chlorophyll content (82%). However, Bacillus polymyxa (KRU-22) with chitin supported maximum root length (143%). Either strain IM-3 alone or in combination with other promising strains could be promoted further for enhanced initial seedling growth of jatropha.     

Quantitative structure-activity relationship analysis as a tool to evaluate the mode of action of chemical hybridizing agents for wheat (Triticum aestivum L.)

Augmentation of wheat production calls for introduction of wheat hybrids in cultivation. In the absence of viable alternative technology of hybrid wheat development, chemical induction of male sterility mediated technology based on chemical hybridizing agents (CHAs) holds a great potential. The QSAR method was applied to two families of CHAs in the N-acylanilines and pyridone class of chemistry. The models for each CHA family gave good correlation between the variations in log percent of male sterility and the steric-electrostatic properties of the sets. QSAR analysis has revealed a direct relationship of the Swain-Lupton constant F(p) and molecular mass but an inverse relationship of MR, ES, and Swain-Lupton resonance constant R in influencing the bioactivity in the N-acylanilines. QSAR analysis of four parent families consisting of two training sets each of pyrid-2-ones and prid-4-ones revealed the positive contributions of field effect exemplified by the Swain-Lupton field constant (F) and the negative contributions of the molar refractivity (MR) of aromatic substituents in all but one training set. The QSAR models also indicated that increased steric bulk at the 4-position on the phenyl ring is associated with enhanced activity. These leads will be useful in explaining the CHA binding fit in the macromolecular receptor site.