Diversity of Paenibacillus durus strains isolated from soil and different plant rhizospheres evaluated by ARDRA and gyrB-RFLP analysis

Strains belonging to Paenibacillus durus isolated from the rhizosphere of various grasses and from bulk soil were previously divided into five phenotypic groups (A1–A5) based on the fermentation pattern of six carbohydrates (A1: sorbitol (+), A2: dulcitol and tagatose (+), A3: starch and glycogen (+), A4: starch, glycogen and d-arabitol (+) and A5: negative for these carbohydrates). This study aimed to assess whether plant types select for specific P. durus phenotypic groups. For that purpose, polymerase chain reaction-restriction fragment length polymorphism analysis of part of genes encoding 16S rRNA (ARDRA) and DNA gyrase subunit B (gyrB-RFLP) were used to produce genetic fingerprints. ARDRA and gyrB-RFLP data were clustered together to generate a dendrogram and two main clusters were observed. Cluster I showed a predominance of strains isolated from wheat, maize and sugarcane rhizospheres. Strains isolated from maize were distributed among the five patterns of carbohydrate metabolism, while strains isolated from sugarcane showed to be predominantly able to metabolize starch and glycogen. Neither sorbitol- nor arabitol-metabolizing strains were found in cluster II, which consisted of strains isolated from soil and from all plant species used. Our results suggest that the plants influenced the diversity of P. durus in their rhizospheres.     

Landscape,Soil, and Plant Analysis of Japanese Stiltgrass (Microstegium vimineum) Invasion in the Piedmont Region,SC

Japanese stiltgrass (Microstegium vimineum), an exotic invasive plant, is native to Southeast Asia. This study was conducted to determine the chemical composition of Japanese stiltgrass as well as soil and landscape characteristics that correlate with invasion of Japanese stiltgrass around Lake Issaqueena in the upper Piedmont of South Carolina. Geographic Information Systems (GISs) and Light Detection and Ranging (LiDAR) were used to determine the spatial pattern of invasion with respect to the aspect, slope, canopy cover, soils, and distance to roads and trails. Japanese stiltgrass was distributed on both sides of Lake Issaqueena in Pacolet and Madison soil map units (Fine, kaolinitic, thermic Typic Kanhapludults) on the average slopes of 21%, but it was particularly common on the eastern shore of the lake in low-lying wet and shaded areas (mean canopy cover 51%). In addition, invasion by Japanese stiltgrass was correlated with the proximity to roads and trails. Plant tissue analysis revealed many differences in the distribution of macronutrients, macrominerals, and micronutrients in the leaves, stems, and roots of Japanese stiltgrass, although those differences were not always statistically significant. Concentrations of nitrogen (N), phosphorus (P), and calcium (Ca) were the highest in leaves while zinc (Zn) concentrations were the highest in stems and concentrations of magnesium (Mg), copper (Cu), manganese (Mn), iron (Fe), and sodium (Na) tended to be higher in roots. Carbon (C), sulfur (S), and potassium (K) concentrations were generally higher in above-ground tissues versus roots. Soil chemical analysis revealed no statistical differences between control and invaded plots. Our findings suggest that watershed areas surrounding lakes may be particularly susceptible to the invasion of Japanese stiltgrass due to their microclimates, low-lying wet pathways for seed distribution and recreational uses.     

Spatial variability of organic matter degradability in tidal Elbe sediments

Purpose

The microbial turnover of sediment organic matter (OM) in ports and waterways impacts water quality, sonic depth finding and presumably also rheological properties as well as greenhouse gas emissions, especially if organic carbon is released as methane. As a consequence, sediment management practices as a whole are affected. This study aimed to discern spatial OM degradability patterns in the Port of Hamburg and investigated correlations with standard analytical properties as a basis for future predictive modelling.

Materials and methods

Sediments in the Port of Hamburg were repeatedly sampled at nine locations along an east-west transect using a 1-m corer. In a stratified sampling approach, layers of suspended particulate matter (SPM), fluid mud (FM), pre-consolidated sediment (PS) and consolidated sediment (CS) were identified and individually analysed for long-term aerobic and anaerobic degradation of organic matter, DNA concentration, stable carbon isotope signature, density fractions and standard solids and pore water properties.

Results and discussion

The investigation area was characterised by a distinct gradient with a 10-fold higher OM degradability in upstream areas and lower degradability in downstream areas. Concomitantly, upstream locations showed higher DNA concentrations and more negative δ¹³C values. The share of bulk sediment in the heavy density fraction as well as the proportion and absolute amount of organic carbon were significantly larger at downstream locations. A depth and hence age-related gradient was found at individual locations, showing higher degradability of the upper, younger material, concomitant with higher DNA concentration, and lower OM turnover in the deeper, older and more consolidated material. Deeper layers were also characterised by higher concentrations of pore water ammonium, indicative of anaerobic nitrogen mineralisation.

Conclusions

Organic matter lability is inversely linked to its stabilisation in organo-mineral complexes. The observed degradability gradient is likely due to the different OM quality in relation to its origin. Downstream OM enters the system with the tidal flood current from the direction of the North Sea whereas upstream locations receive OM originating from the catchment, containing more autochthonous, plankton-derived and more easily degradable components. At individual sampling points, depth-related degradability gradients reflect an age gradient, with easily degradable material in top layers and increasing stabilisation of OM in organo-mineral compounds with depth.

     

Optimal Management Practices for Nitrogen Application in Corn Cultivated During Summer and Fall in the Tropics

Optimal management practices for nitrogen (N) fertilization is well defined for corn (Zea mays) cultivated during summer (“summer” corn), but not for corn cultivated during the fall (“fall” corn) in the tropics. Two experiments were carried out to evaluate N rates (50, 100, 200, and 300 kg N ha^?1), N application timing (pre-planting – PP, V2–V3, and V5–V6) and N split application, once (at PP, V3, and V6), two (at V3+ V6) and three times (at PP+ V3+ V6) in corn cultivated during summer (2014/2015) and fall (2015/2016). Data on corn grain yield (CGY), weight of 1000-grains, leaf N content and values of soil-plant analyses development (SPAD) were collected and analyzed using univariate, multivariate (principal component analysis, PCA) and regression analysis. Results showed that corn growth was affected by N rates and splitting. Corn cultivated during summer presented higher CGY and weight-1000 g than corn cultivated during the fall. The highest yields were obtained with higher N rates on “summer” corn (125 kg N ha^?1) than “fall” corn (50 kg N ha^?1). Split N-application at vegetative growth stages, V3+ V6, or PP+ V2+ V6, provided higher yields for “summer” corn, while only PP application was a reliable period of N fertilization for “fall” corn. The finding is that corn cultivated during the fall presented a lower response to N and no obvious advantages to split N fertilization when compared to corn cultivated during summer. These optimal management practices for N fertilization in corn production in the tropics depend on soil water availability.     

Dwarf shrub litter as a food source for macro-decomposers in alpine pastureland

Dwarf shrub litter is thought to be of poor quality and palatability for macro-decomposers. In laboratory feeding experiments, however, it was found that this litter type represents a potential food source for earthworms and millipedes. Here we tested whether this is true under natural conditions by conducting a 1 year field experiment on an abandoned alpine pasture in Tyrol (Austria). As the natural isotopic signatures of plant litter do not allow discriminating between different plant species, dwarf shrub litter, artificially enriched in ¹⁵N, was offered in experimental plots to the macro-decomposer community. Both the earthworm Lumbricus rubellus and the millipede Cylindrojulus fulviceps fed on dwarf shrub litter as indicated by their increased δ¹⁵N signatures, but IsoError analysis indicated a clear preference for grass litter for all macro-decomposer species investigated.Soil δ¹⁵N signatures were only marginally affected by the experimental provision of ¹⁵N-enriched dwarf shrub litter, whereas litter from other, unlabelled, plants became enriched by the isotopic tracer to some extent. Except for one grass species, plants harvested at the end of the experiment were not enriched in ¹⁵N, suggesting that the N-uptake from decomposing litter material by plants on abandoned alpine pastureland is slow.