Simulations of multipurpose water availability in a semi-arid catchment under different management strategies

In the semi-arid Brazilian Northeast, the exploitation of alluvial aquifers for irrigation and domestic supply to rural communities over the last 10 years has upset the traditional mechanisms of water resources management. In the Forquilha watershed (221 km²; 5°17″S, 39°30″W), the two main water resources are reservoirs (with a capacity exceeding 0.9-6.7 × 10⁶ m³), used for domestic water supply only, and an alluvial aquifer (2.3 × 10⁶ m³), used for irrigation and domestic water supply. From 1998 to 2006, the irrigated area with alluvial groundwater increased from 0 to 75 ha, and the fraction of population supplied through domestic water networks, using reservoirs and the aquifer, increased from 1% to 70%. Based on physical and socioeconomic issues, three main water territories have been defined (“Aquifer”, “Reservoirs”, and “Disperse Habitat”). Considering the next 30 years with a realistic population growth, three hypotheses regarding irrigated area (i.e., 0, 75, or 150 ha), and several possible water-management scenarios, hydrological balance models were built and used to simulate the different impacts on water resource availability and salinity. Simulation results showed that, in all cases, releases from the upstream main reservoir are necessary to keep reservoir salinity below 0.7 g L⁻¹ and for guaranteeing domestic needs in the whole watershed. As a consequence, a management approach that takes into account the interrelations among the three territories is necessary. Moreover, the simulations showed that the area of irrigated fields cannot exceed the current extent (75 ha), or serious restrictions on water availability and salinity will take place. Moreover, important socioeconomic problems are expected, including a high cost of palliative water supply with tank trucks from external sources.     

Identification and detection of three new F17 fimbrial variants in Escherichia coli strains isolated from cattle

F17 fimbriae are produced by pathogenic Escherichia coli involved in diarrhea and septicemia outbreaks in calves and lambs. These proteins result from the expression of four different clustered genes, namely f17A, f17D, f17C and f17G, encoding a pilin protein, a periplasmic protein, an anchor protein and an adhesin protein, respectively. Several variants of f17A and f17G genes have been reported and found genetically associated with typical virulence factors of bovine pathogenic E. coli strains. In this study, a new F17e-A variant, closely related to F17b-A, was identified from a collection of 58 E. coli isolates from diarrheic calves in Iran. While highly prevalent in Iranian F17-producing clinical isolates from calves, this variant was rare among E. coli from a French healthy adult bovine population, suggesting a possible association with virulence. The f17Ae gene was also found in the genome of the Shiga-like toxin variant Stx_1d–producing bovine E. coli strain MHI813, and belonged to a gene cluster also encoding a new F17-G3 variant, which greatly differed from F17-G1 and F17-G2. This gene cluster was located on a pathogenicity island integrated in the tRNA pheV gene. The gene coding for a third new F17f-A variant corresponding to a combination of F17c-A and F17d-A was also identified on the pVir68 plasmid in the bovine pathogenic E. coli strain 6.0900. In conclusion, we identified three new F17-A and F17-G variants in cattle E. coli, which may also have significant impact on the development of new diagnostics and vaccination tools.     

On the origin of leprosy

Leprosy, a chronic human disease with potentially debilitating neurological consequences, results from infection with Mycobacterium leprae. This unculturable pathogen has undergone extensive reductive evolution, with half of its genome now occupied by pseudogenes. Using comparative genomics, we demonstrated that all extant cases of leprosy are attributable to a single clone whose dissemination worldwide can be retraced from analysis of very rare single-nucleotide polymorphisms. The disease seems to have originated in Eastern Africa or the Near East and spread with successive human migrations. Europeans or North Africans introduced leprosy into West Africa and the Americas within the past 500 years.     

Particulate matter dynamics and transformations in a recirculating aquaculture system: application of stable isotope tracers in seabass rearing

The control of adverse effects and the possibility of removing suspended solids from recirculating aquaculture systems (RAS) are the principal challenges facing aquaculture engineers. However, their dynamics and transformations are not yet well known. In this study, carbon and nitrogen stable isotopes values (δ¹³C and δ¹⁵N) were used as tracers of particulate matter in a seabass RAS. An isotopic mixing model was employed to estimate the contributions of particulate sources. Feed (−22.1‰ for δ¹³C and 11.9‰ for δ¹⁵N), feces (−24.0‰ for δ¹³C and 6.4‰ for δ¹⁵N) and biofilm (−25.1‰ for δ¹³C and 12.9‰ for δ¹⁵N) were identified as main sources of particulate matter. The particle traps collected a mixing of 29% of uneaten feed and 71% of feces, when drum filter eliminated all remaining uneaten feed, shifting the isotopic signatures of suspended solids from −23.8 and 7.9‰ to −24.9 and 8.3‰ for δ¹³C and δ¹⁵N, respectively. The fish muscle (−18.6‰ for δ¹³C and 15.4‰ for δ¹⁵N) could reflect the isotopic variability of feed ingredients accumulated over time. The isotopic shifts indicate that the contribution of three sources depends on: (1) fish metabolism; (2) water treatment devices; and (3) bacterial bio-fouling into biofilter.     

ermB-mediated erythromycin resistance in Streptococcus uberis from bovine mastitis

The ermB gene was identified in 111 erythromycin resistant isolates of Streptococcus uberis from cases of bovine mastitis associated either with a constitutive (47/111) or an inducible (64/111) phenotype, as well as a phenotypic resistance to all macrolides tested. Resistance to lincosamides was identified in 14 other isolates of S. uberis from bovine mastitis cases and was mainly mediated by the linB gene; resistance conferred by a combination of two genes (linB–lnuD, ermB–linB) was also detected.     

The impact of naturally-occurring,trans-placental bluetongue virus serotype-8 infection on reproductive performance in sheep

Infection with bluetongue virus serotype (BTV)-8 occurred in ruminants in 2006 in Central-Western Europe. The trans-placental passage of this virus has been demonstrated in naturally- and experimentally-infected cattle and in experimentally-infected sheep. Trans-placental transmission is potentially important in the ‘over-wintering’ of this virus and its subsequent impact on reproductive performance. This epidemiological study was carried out on a sheep flock in Belgium that had experienced a severe outbreak of BTV-8 infection, and where the seroprevalence had increased from 1.3% to 88% between January and November 2007. In total, 476 lambs and 26 aborted fetuses from 300 ewes, lambing at four distinct time periods, were investigated between November 2007 and May 2008.The following evidence suggested that BTV-8 infection occurred in utero: (1) positive PCR results from splenic tissue from aborted fetuses (n = 4); (2) fetal malformations suggestive of BTV infection (n = 10); (3) positive PCR results from red blood cells in-lambs (n = 7), and (4) the presence of antibody at birth in viable lambs prior to the intake of colostrum (n = 9). The evidence provided by this investigation strongly suggests that trans-placental BTV-8 infection occurs in naturally-infected sheep and the impact of infection on the reproductive performance of such a naïve flock was considerable, with up to 25% of ewes aborting and with flock fertility reduced by 50%. The contribution of in utero-infected lambs to the over-wintering of BTV appears limited.     

Chemical composition of silage residues sustaining the larval development of the Culicoides obsoletus/Culicoides scoticus species (Diptera: Ceratopogonidae)

Culicoides (Diptera: Ceratopogonidae) are biological vectors of bluetongue virus (BTV). Bluetongue is a viral disease that affects domestic and wild ruminants. Since its recent emergence in northern Europe, this disease has caused considerable economic losses to the sheep and cattle industry. The biotopes, and more particularly the chemical characteristics which are suitable for larval development of the main vector species, are still relatively unknown. This study shows that the larvae of biting midges belonging to the species Culicoides obsoletus and Culicoides scoticus are able to breed in different types of silage residue (maize, grass, sugar beet pulp and their combinations). The chemical composition of substrates strongly influences the presence of the immature stages of these biting midges. Higher lignin and insoluble fibre contents seem to favour their presence and could play the role of a physical support for semi-aquatic larvae. In contrast, higher concentrations of magnesium and calcium are negatively correlated with the presence of these two species. These data will help to locate and monitor the breeding sites of these species and could contribute to the control of these insects on farms.     

Microalgae n-3 PUFAs Production and Use in Food and Feed Industries

N-3 polyunsaturated fatty acids (n-3 PUFAs), and especially eicosapentaenoic acid (EPA) and docosahexaenoic acid (DHA), are essential compounds for human health. They have been proven to act positively on a panel of diseases and have interesting anti-oxidative, anti-inflammatory or anti-cancer properties. For these reasons, they are receiving more and more attention in recent years, especially future food or feed development. EPA and DHA come mainly from marine sources like fish or seaweed. Unfortunately, due to global warming, these compounds are becoming scarce for humans because of overfishing and stock reduction. Although increasing in recent years, aquaculture appears insufficient to meet the increasing requirements of these healthy molecules for humans. One alternative resides in the cultivation of microalgae, the initial producers of EPA and DHA. They are also rich in biochemicals with interesting properties. After defining macro and microalgae, this review synthesizes the current knowledge on n-3 PUFAs regarding health benefits and the challenges surrounding their supply within the environmental context. Microalgae n-3 PUFA production is examined and its synthesis pathways are discussed. Finally, the use of EPA and DHA in food and feed is investigated. This work aims to define better the issues surrounding n-3 PUFA production and supply and the potential of microalgae as a sustainable source of compounds to enhance the food and feed of the future.