Mapping QTLs using a novel source of salinity tolerance from Hasawi and their interaction with environments in rice

Background

Salinity is one of the most severe and widespread abiotic stresses that affect rice production. The identification of major-effect quantitative trait loci (QTLs) for traits related to salinity tolerance and understanding of QTL × environment interactions (QEIs) can help in more precise and faster development of salinity-tolerant rice varieties through marker-assisted breeding. Recombinant inbred lines (RILs) derived from IR29/Hasawi (a novel source of salinity) were screened for salinity tolerance in the IRRI phytotron in the Philippines (E1) and in two other diverse environments in Senegal (E2) and Tanzania (E3). QTLs were mapped for traits related to salinity tolerance at the seedling stage.

Results

The RILs were genotyped using 194 polymorphic SNPs (single nucleotide polymorphisms). After removing segregation distortion markers (SDM), a total of 145 and 135 SNPs were used to construct a genetic linkage map with a length of 1655 and 1662 cM, with an average marker density of 11.4 cM in E1 and 12.3 cM in E2 and E3, respectively. A total of 34 QTLs were identified on 10 chromosomes for five traits using ICIM-ADD and segregation distortion locus (SDL) mapping (IM-ADD) under salinity stress across environments. Eight major genomic regions on chromosome 1 between 170 and 175 cM (qSES1.3, qSES1.4, qSL1.2, qSL1.3, qRL1.1, qRL1.2, qFWsht1.2, qDWsht1.2), chromosome 4 at 32 cM (qSES4.1, qFWsht4.2, qDWsht4.2), chromosome 6 at 115 cM (qFWsht6.1, qDWsht6.1), chromosome 8 at 105 cM (qFWsht8.1, qDWsht8.1), and chromosome 12 at 78 cM (qFWsht12.1, qDWsht12.1) have co-localized QTLs for the multiple traits that might be governing seedling stage salinity tolerance through multiple traits in different phenotyping environments, thus suggesting these as hot spots for tolerance of salinity. Forty-nine and 30 significant pair-wise epistatic interactions were detected between QTL-linked and QTL-unlinked regions using single-environment and multi-environment analyses.

Conclusions

The identification of genomic regions for salinity tolerance in the RILs showed that Hasawi possesses alleles that are novel for salinity tolerance. The common regions for the multiple QTLs across environments as co-localized regions on chromosomes 1, 4, 6, 8, and 12 could be due to linkage or pleiotropic effect, which might be helpful for multiple QTL introgression for marker-assisted breeding programs to improve the salinity tolerance of adaptive and popular but otherwise salinity-sensitive rice varieties.

     

DPX-MP062—a potent compound for controlling the Egyptian cotton leafworm Spodoptera littoralis (Boisd.)

The effects of DPX-MP062 [methyl 7-chloro-2,3,4a,5-tetrahydro-2-[methoxycarbonyl(4-trifluoromethoxyphenyl)carbamoyl] indeno[1,2-e][1,3,4] oxadiazine-4a-carboxylate] a broad-spectrum insecticide with a novel mode of action, on the Egyptian cotton leafworm, Spodoptera littoralis, were studied in laboratory experiments. Egg hatch was affected by high concentrations (125 mg AI litre^-1) of DPX-MP062. Larvae that hatched from treated eggs were significantly affected at concentrations of 12·5 mg AI litre^-1 and greater. Larvae were fed castor bean leaves treated with DPX-MP062; 1st-instar larvae were the most susceptible development stage. Pupation and adult formation were determined in assays with 5th-instar larvae. There was strong suppression of adult formation; 65 and 91% at 0·5 and 0·75 mg AI litre^-1, respectively. Highly affected larvae died before pupation; slightly affected ones reached pupation 2–4 days later, were smaller than larvae in the untreated control, and were sometimes unable to develop into normal adults. Comparatively high concentrations (50 and 100 mg AI litre^-1) of the test compound were necessary to affect adults by ingestion, but no effects from contact application could be determined at a concentration of 100 mg AI litre^-1. © 1998 Society of Chemical Industry     

Seasonal water relations in four co-existing native shrub species from Northeastern Mexico

Seasonal xylem water potentials (Ψ, MPa) and their relationship to soil water content and evaporative demand components were studied in the shrub species Acacia amentacea, Celtis ehrenbergiana, Forestiera angustifolia, and Parkinsonia texana var. macra. Predawn (Ψpd) and midday (Ψmd) water potentials were estimated at 15 days intervals, between January 15 and October 30, 2009 using a Scholander pressure bomb at 06:00 h (predawn) and 14:00 h (midday), respectively. During the humid period, Ψpd ranged from ?0.30 MPa (C. ehrenbergiana), to ?0.90 MPa (P. texana). In contrast, over the driest period, Ψpd varied between ?2.18 (P. texana) and ?3.94 MPa (F. angustifolia). At midday, P. texana and F. angustifolia showed the highest (?1.14 MPa) and lowest (?3.38 MPa) Ψ values, respectively. Average soil water content accounted for 35 to 70% of the variation in predawn Ψ. Furthermore, both Ψ reflected the environmental conditions, as indicated by typical correlations observed. The studied shrub species exhibited what seem to be different strategies to avoid damage caused by drought. Thus, P. texana behaved rather as an isohydric plant able to deal well with severe, but short periods of drought. Under exceptionally dry environmental conditions, Ψpd undercut Ψmd values. Similar observations have been made by researchers studying plants in dry ecosystems. All studied native species are recommended for reforestation of the Tamaulipan shrublands, although C. ehrenbergiana and F. angustifolia seem to have limited tolerances for extreme water stress.     

Dietary TH 6040 alters composition and enzyme activity of housefly larval cuticle

Housefly larvae of 2 days of age were allowed to grow in media containing 0, 0.4, 1.0, or 2.5 ppm TH 6040[1-(4-chlorophenyl)-3-(2,6-difluorobenzoyl)-urea] for 3 days prior to analysis of the cuticle for structural components (chitin and protein) or enzymes important in cuticle formation (chitinase and phenoloxidase). As the TH 6040 concentration is increased, the amount of chitin is progressively reduced such that, at 2.5 ppm TH 6040, the level is only 25% of normal. The amount of cuticle protein is unaffected so the protein: chitin ratio increases from 3.4 in the control larvae to 14.3 in 2.5 ppm-treated larvae, an alteration which probably affects the elasticity and firmness of the endocuticle. Dietary TH 6040 at 1.0 ppm increases the cuticle chitinase activity to about 180% and the cuticle phenoloxidase activity to 155% as compared with control larvae, with a further chitinase activity increase to 240% of normal at 2.5 ppm TH 6040. These enzyme changes are expected to hamper the build-up or maintenance of the cuticle chitin and enhance sclerotization of the exocuticle.     

Emamectin,a novel insecticide for controlling field crop pests

Emamectin is a macrocyclic lactone insecticide with low toxicity to non-target organisms and the environment, and is considered an important component in pest-management programmes for controlling field crop pests. It is a powerful compound for controlling the cotton bollworm Helicoverpa armigera (Hübner). A spray concentration of 25 mg AI litre-1 in a cotton field resulted in over 90% suppression of H armigera larvae up to day 28 after treatment, while similar mortality of the Egyptian cotton leafworm Spodoptera littoralis Boisduval, under the same conditions, was maintained for 3 days only. Emamectin is a potent compound for controlling the western flower thrips Frankliniella occidentalis (Pergande) under both laboratory and field conditions and its activity on adults was over 10-fold greater than that of abamectin. Spray concentrations of 10 and 50 mg AI litre-1 in Ageratum houstonianum Mill flowers resulted in total suppression of adults up to day 11 and of larvae up to day 20 after treatment. Under standard laboratory conditions, emamectin exhibits a considerable activity on the whitefly Bemisia tabaci (Gennadius) and the leafminer Liriomyza huidobrensis (Blanchard). Further studies are required to evaluate its potential activity on the latter pests under field conditions.     

The response of pyriproxyfen-resistant and susceptible Bemisia tabaci Genn (Homoptera: Aleyrodidae) to pyriproxyfen and fenoxycarb alone and in combination with piperonyl butoxide

Pyriproxyfen was effective against susceptible Bemisia tabaci eggs at a LC₅₀ of 0.003 mg litre⁻¹ and against nymphs at 0.02 mg litre⁻¹. In comparison, eggs of a laboratory selected, pyriproxyfen-resistant B tabaci strain, originating in an Israeli greenhouse, exhibited 6500-fold resistance and nymphs exhibited 1100-fold resistance. Eggs and nymphs of a strain from an Israeli sunflower field exhibited 450 and 210-fold resistance in comparison to the susceptible standard. Fenoxycarb was generally less effective than pyriproxyfen against B tabaci eggs and nymphs but was unaffected by pyriproxyfen resistance. Piperonyl butoxide (PB) was antagonistic to pyriproxyfen, and this increased with increasing pyriproxyfen resistance. PB had no effect on the toxicity of fenoxycarb. Collectively, these data imply that the modes of action of pyriproxyfen and fenoxycarb are distinct, despite the structural similarities of these molecules. Possible reasons for the antagonism of PB against pyriproxyfen are discussed. © 1999 Society of Chemical Industry     

Assessment of the response of carrot somaclones to Pythium violae, causal agent of cavity spot

Cavity spot is a major disease of carrots, causing cavities on the surface of the root. Available commercial varieties show a range of susceptibility but no significant resistance. Seed progeny from 46 tissue culture-derived carrot ( Daucus carota ) somaclones were screened for viability, then 19 selected somaclone families were sown under glasshouse conditions, along with commercial cultivars (Bertan, Nandor, Bolero and Vita Longa) as controls. Mature roots were exposed to Pythium violae in a cavity spot bioassay to determine their response as measured by disease incidence and severity. Some somaclones formed fewer lesions than the least susceptible control cultivar, Vita Longa. Seven somaclonal families that showed a range of susceptibility were sown under field conditions and the assessment was repeated. Although there was little relationship between glasshouse and field-trial results, under field conditions one of the somaclones had a mean incidence of disease, as estimated by transformed data, of 1·9 compared with 37·9 for the most susceptible somaclone and 3·5 for Bolero, the most resistant commercial cultivar. The results indicated that significant genetic variation in susceptibility to cavity spot disease was present in the somaclones.     

Evaluation of Deammonification Process by Response Surface Models

The influence of the operational variables on the Anammox process has been generally researched considering each variable separately. However, the optimization of the process also requires the identification of the more significant variables and their possible interactions. Response surface models were successfully applied to evaluate the performance of the Anammox process in a deammonification system (i.e., one-stage biofilm Anammox process) taking into account the combined effects caused by two sets of three variables. Specific Anammox activity was measured by a manometric method and used as the response variable. The obtained models pointed out that the significant variables were the temperature, the value of pH, and the ratio between the unionized species of the substrates (free ammonia and free nitrous acid (FA/FNA)). There were interactions among them caused by chemical equilibriums. Total nitrogen concentration and ammonium concentration were found to be not significant in the tested range. According to the models, the optimum values of temperature, pH, and free ammonia to free nitrous acid ratio within the test ranges were, respectively, 30°C, 7.0, and 0.3. Further research at higher temperatures and lower values of pH and FA/FNA ratios would be necessary in order to find the absolute optimum conditions for the process. The obtained model can be also useful in order to develop control strategies that take into account the significant variables and their optimum ranges. A strategy to control deammonification reactors has been proposed, according to the results of the modeling.     

Causes and feedbacks to widespread grass invasion into chaparral shrub dominated landscapes

Landscape Ecology - This study provides a unified, holistic framework for predicting the dynamics of shrub-grass conversion throughout Mediterranean-climate shrublands. This work focuses...     

Use of personal protective equipment in a radiology room at a veterinary teaching hospital

The use of personal protective equipment by veterinary workers during radiographic imaging is inconsistent. While the self‐reported use of leaded aprons and thyroid shields approaches 100% in some studies, the use of leaded gloves and eyeglasses is much lower. Previous studies describing personal protective equipment use are based on self‐reporting. Objectives of this prospective, observational study were to describe use of leaded personal protective equipment during radiographic imaging by veterinary workers, and to compare observed use with self‐reported use. Use of leaded personal protective equipment during radiographic imaging by veterinary workers was observed over a 10 week period using two motion‐triggered video cameras, and a questionnaire was then completed by workers on their use of personal protective equipment. Workers restrained the animal during 91.8% (753/820) of exposures. An apron and a securely closed thyroid shield were worn for >99% of studies. Gloves were used correctly for 43.6% (156/358) of radiographic studies. Leaded eyeglasses were worn for 1.7% (6/358) of studies. Correct glove use was more frequent during regular working hours than after‐hours for both veterinarians (odds ratio 32.7, P = 0.001) and veterinary students (odds ratio 75.1, P < 0.001). The number of workers in the room was lower when animals were sedated (P = 0.002) or anesthetized (P = 0.017). Workers overestimated their frequency of glove use (P <0.001). In conclusion, workers use personal protective equipment less frequently in an unsupervised environment, and overestimate their use of personal protective equipment. Use of sedation or anesthesia decreases worker exposure to ionizing radiation.