WIPPER: an accurate and efficient field phenotyping platform for large-scale applications

More accurate, rapid, and easy phenotyping tools are required to match the recent advances in high-throughput genotyping for accelerating breeding and genetic analysis. The conventional data recording in field notebooks and then inputting data to computers for further analysis is inefficient, time-consuming, laborious, and prone to human error. Here, we report WIPPER (for Wireless Plant Phenotyper), a new phenotyping platform that combines field phenotyping and data recording with the aid of Bluetooth communication, thus saving time and labor not only for field data recoding but also for inputting data to computers. Additionally, it eliminates the risk of human error associated with phenotyping and inputting data. We applied WIPPER to 100 individuals of a rice recombinant inbred line (RIL) for measuring leaf width and relative chlorophyll content (SPAD value), and were able to record an accurate data in a significantly reduced time compared with the conventional method of data collection. We are currently using WIPPER for routine management of rice germplasm including recording and documenting information on phenotypic data, seeds, and DNA for their accelerated utilization in crop breeding.     

A model for explaining genotypic and environmental variation in vegetative biomass growth in rice based on observed LAI and leaf nitrogen content

The objectives of this study are to propose a model for explaining the genotypic and environmental variation in above-ground biomass growth via photosynthesis and respiration processes from transplanting to heading for different rice genotypes grown under a wide range of environments, and to identify the physiological traits associated with genotypic difference in the biomass growth based on model analysis. Cross-locational experiments were conducted with nine different rice genotypes at eight locations in Asia covering a wide climate range under irrigated conditions with sufficient nitrogen application. The crop growth rate observed during the period from transplanting to heading ranged from 3.4 to 19.4 g m⁻² d⁻¹ among the genotypes grown at the eight locations. About one-third of the data sets were utilized for model calibration and the remaining sets were used for model validation. An above-ground biomass growth model was developed by integrating processes of single leaf photosynthesis as a function of stomatal conductance and leaf nitrogen content, growth and maintenance respiration and crop development. To rigorously examine the validity of this process model, measured data were input as external variables for leaf area index (LAI) development and leaf nitrogen content per unit leaf area. The model well explained the observed dynamics in above-ground biomass growth (R² = 0.95*** for validation dataset) of nine rice genotypes grown under a variety of environments in Asia. The model simulation suggested that genotypic difference in the biomass growth was closely related to the difference in the stomatal conductance and leaf nitrogen content, as well as to LAI. This paper proposes the model structure, algorithms and all parameter values contained in the model, and discuss its effectiveness as a component of a more comprehensive model for simulating dynamics of biomass growth, LAI development and nitrogen uptake as a function of genotypic coefficients and environments.     

Antioxidant activity of chemical components from sage (Salvia officinalis L.) and thyme (Thymus vulgaris L.) measured by the oil stability index method

A new abietane diterpenoid, 12-O-methyl carnosol (2), was isolated from the leaves of sage (Salvia officinalis L.), together with 11 abietane diterpenoids, 3 apianane terpenoids, 1 anthraquinone, and 8 flavonoids. Antioxidant activity of these compounds along with 4 flavonoids isolated from thyme (Thymus vulgaris L.) was evaluated by the oil stability index method using a model substrate oil including methyl linoleate in silicone oil at 90 degrees C. Carnosol, rosmanol, epirosmanol, isorosmanol, galdosol, and carnosic acid exhibited remarkably strong activity, which was comparable to that of alpha-tocopherol. The activity of miltirone, atuntzensin A, luteolin, 7-O-methyl luteolin, and eupafolin was comparable to that of butylated hydroxytoluene. The activity of these compounds was mainly due to the presence of ortho-dihydroxy groups. The 1,1-diphenyl-2-picrylhydrazyl radical scavenging activity of these compounds showed the similar result.     

Antioxidant properties of ferulic acid and its related compounds

Antioxidant activity of 24 ferulic acid related compounds together with 6 gallic acid related compounds was evaluated using several different physical systems as well as their radical scavenging activity. The radical scavenging activity on 1,1-diphenyl-2-picrylhydrazyl (DPPH) decreased in the order caffeic acid > sinapic acid > ferulic acid > ferulic acid esters > p-coumaric acid. In bulk methyl linoleate, test hydroxycinnamic acids and ferulic acid esters showed antioxidant activity in parallel with their radical scavenging activity. In an ethanol-buffer solution of linoleic acid, the activity of test compounds was not always associated with their radical scavenging activity. Ferulic acid was most effective among the tested phenolic acids. Esterification of ferulic acid resulted in increasing activity. The activity of alkyl ferulates was somewhat influenced by the chain length of alcohol moiety. When the inhibitory effects of alkyl ferulates against oxidation of liposome induced by AAPH were tested, hexyl, octyl, and 2-ethyl-1-hexyl ferulates were more active than the other alkyl ferulates. Furthermore, lauryl gallate is most effective among the tested alkyl gallates. These results indicated that not only the radical scavenging activity of antioxidants, but also their affinity with lipid substrates, might be important factors in their activity.     

Antioxidant compounds from the leaves of Peucedanum japonicum thunb

Seventeen compounds were isolated from the n-butanol soluble fraction of the leaves of Peucedanum japonicum Thunb. On the basis of MS and various NMR spectroscopic techniques, the structures of the isolated compounds were determined as isoquercitrin (1), rutin (2), 3-O-caffeoylquinic acid (3), 4-O-caffeoylquinic acid (4), 5-O-caffeoylquinic acid (5), cnidioside A (6), praeroside II (7), praeroside III (8), apterin (9), esculin (10), (R)-peucedanol (11), (R)-peucedanol 7-O-beta-d-glucopyranoside (12), l-tryptophan (13), uracil (14), guanosine (15), uridine (16), and thymidine (17). All compounds except 11 and 12 were isolated for the first time from P. japonicum. Several isolated compounds were quantified by high-performance liquid chromatography analysis. In addition, all isolated compounds were examined for radical scavenging on 1,1-diphenyl-2-picrylhydrazyl radical and for inhibition of oxidation of liposome induced by 2,2'-azobis(2-amidinopropane)dihydrochloride. Compounds 2-5 were found to be the major potent constituents, which contribute to the antioxidant activity of P. japonicum leaves.     

A model explaining genotypic and environmental variation in leaf area development of rice based on biomass growth and leaf N accumulation

Leaf area index (LAI) is one of the major determinants of crop photosynthesis. The objectives of this study were to clarify the relationship between LAI development and crop growth in diverse rice genotypes grown under widely different climate conditions and to develop a model explaining genotypic and environmental variation in LAI dynamics based on environmental and plant factors. Cross-locational experiments were conducted with nine different rice genotypes at eight locations in Asia covering a wide climate range under irrigated conditions with sufficient nitrogen application. The LAI observed at the heading stage ranged from 0.85 to 8.77 among the genotypes grown at the eight locations. A fairly stable allometric relationship was observed between LAI development and above-ground biomass growth during the period from transplanting to 2 weeks before heading over all the genotypes, sites and years (r = 0.91). The allometric relationship was, however, under the influence of leaf nitrogen content per unit leaf area (LNC, g m⁻² leaf) and air temperature. On the basis of these results, we modeled the LAI development as a function of relative crop growth rate (RGR), LNC and air temperature. The rate of LAI decrease associated with leaf senescence was also described as a function of LNC.